Ggra8964.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8964.t1
Unique NameGgra8964.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:986721..987416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708767.1
PFAMsFer2
Max annot lvl2759|Eukaryota
Evalue9.08e-30
EggNOG OGs2EYCC@1|root,2SZW3@2759|Eukaryota
Description2Fe-2S iron-sulfur cluster binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8964Ggra8964Gracilaria gracilis GNS1m malegenetig00000860_pilon 986721..987416 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8964.t1.stop1Ggra8964.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 986721..986723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8964.t1.CDS1Ggra8964.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 986721..987416 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8964.t1.exon1Ggra8964.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 986721..987416 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8964.t1.start1Ggra8964.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 987414..987416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8964.t1Ggra8964.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 986721..987416 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8964.t1 ID=Ggra8964.t1|Name=Ggra8964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=232bp
MTHAAEPPPTGSSPAELRQPSPSPSPSPSPPPSSQPAAQSADAQQAKPPE
YQLMPGEIAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGV
CGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASKAK
NPMARFENMDTEYVARAAPKVRGAFTRTVDCRACDTVGVVQCDACEGEGE
DEGYVCALCAGTGKLRCGDCQGTGIVTVRTR*
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spliced messenger RNA

>Ggra8964.t1 ID=Ggra8964.t1|Name=Ggra8964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000860_pilon:986721..987416- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCACGCCGCGGAGCCGCCGCCCACCGGCTCGTCGCCCGCGGAGCT
GCGCCAGCCGTCACCGTCACCGTCGCCGTCGCCGTCGCCGCCACCGTCGT
CACAGCCGGCCGCGCAGTCAGCCGACGCGCAGCAGGCAAAGCCGCCAGAG
TACCAGCTCATGCCGGGCGAGATCGCCGTGCGCTTCATCAACACGCCGTC
CGGCCAAGAGGTGGTGGCCGCCGCAAAGGTCGGCGACAACCTGCTGCGCG
TGGGCGACTCGGTTAACTTGCACATCCCGCGCGCCTGTCAGACCGGCGTG
TGCGGCTCGTGCACCTGCGATGTGTTGGACCCTTCGTCGCCGGACGGCCG
CCAGACCGTGCGCGCCTGTCAGACCGGCGCCGTGCCCACCGACGGCTCCA
ACGAGCTGGTGGTCGACGTCGCGCGCATGAAAACCGCCAGCAAGGCCAAG
AACCCCATGGCGCGCTTTGAAAACATGGATACCGAGTATGTCGCCAGGGC
GGCGCCCAAAGTCAGGGGCGCTTTTACTCGAACTGTTGACTGTCGCGCTT
GTGATACTGTGGGCGTTGTTCAGTGCGACGCGTGCGAGGGCGAGGGCGAG
GATGAGGGATATGTGTGCGCGCTTTGTGCCGGTACGGGCAAACTGCGTTG
TGGTGATTGTCAGGGCACGGGCATTGTCACCGTTCGTACACGGTAA
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protein sequence of Ggra8964.t1

>Ggra8964.t1 ID=Ggra8964.t1|Name=Ggra8964.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MTHAAEPPPTGSSPAELRQPSPSPSPSPSPPPSSQPAAQSADAQQAKPPE
YQLMPGEIAVRFINTPSGQEVVAAAKVGDNLLRVGDSVNLHIPRACQTGV
CGSCTCDVLDPSSPDGRQTVRACQTGAVPTDGSNELVVDVARMKTASKAK
NPMARFENMDTEYVARAAPKVRGAFTRTVDCRACDTVGVVQCDACEGEGE
DEGYVCALCAGTGKLRCGDCQGTGIVTVRTR*
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mRNA from alignment at tig00000860_pilon:986721..987416-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8964.t1 ID=Ggra8964.t1|Name=Ggra8964.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000860_pilon:986721..987416- (Gracilaria gracilis GNS1m male)
ATGACGCACGCCGCGGAGCCGCCGCCCACCGGCTCGTCGCCCGCGGAGCT
GCGCCAGCCGTCACCGTCACCGTCGCCGTCGCCGTCGCCGCCACCGTCGT
CACAGCCGGCCGCGCAGTCAGCCGACGCGCAGCAGGCAAAGCCGCCAGAG
TACCAGCTCATGCCGGGCGAGATCGCCGTGCGCTTCATCAACACGCCGTC
CGGCCAAGAGGTGGTGGCCGCCGCAAAGGTCGGCGACAACCTGCTGCGCG
TGGGCGACTCGGTTAACTTGCACATCCCGCGCGCCTGTCAGACCGGCGTG
TGCGGCTCGTGCACCTGCGATGTGTTGGACCCTTCGTCGCCGGACGGCCG
CCAGACCGTGCGCGCCTGTCAGACCGGCGCCGTGCCCACCGACGGCTCCA
ACGAGCTGGTGGTCGACGTCGCGCGCATGAAAACCGCCAGCAAGGCCAAG
AACCCCATGGCGCGCTTTGAAAACATGGATACCGAGTATGTCGCCAGGGC
GGCGCCCAAAGTCAGGGGCGCTTTTACTCGAACTGTTGACTGTCGCGCTT
GTGATACTGTGGGCGTTGTTCAGTGCGACGCGTGCGAGGGCGAGGGCGAG
GATGAGGGATATGTGTGCGCGCTTTGTGCCGGTACGGGCAAACTGCGTTG
TGGTGATTGTCAGGGCACGGGCATTGTCACCGTTCGTACACGGTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:986721..987416-

>Ggra8964.t1 ID=Ggra8964.t1|Name=Ggra8964.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000860_pilon:986721..987416- (Gracilaria gracilis GNS1m male)
ATGACGCACGCCGCGGAGCCGCCGCCCACCGGCTCGTCGCCCGCGGAGCT
GCGCCAGCCGTCACCGTCACCGTCGCCGTCGCCGTCGCCGCCACCGTCGT
CACAGCCGGCCGCGCAGTCAGCCGACGCGCAGCAGGCAAAGCCGCCAGAG
TACCAGCTCATGCCGGGCGAGATCGCCGTGCGCTTCATCAACACGCCGTC
CGGCCAAGAGGTGGTGGCCGCCGCAAAGGTCGGCGACAACCTGCTGCGCG
TGGGCGACTCGGTTAACTTGCACATCCCGCGCGCCTGTCAGACCGGCGTG
TGCGGCTCGTGCACCTGCGATGTGTTGGACCCTTCGTCGCCGGACGGCCG
CCAGACCGTGCGCGCCTGTCAGACCGGCGCCGTGCCCACCGACGGCTCCA
ACGAGCTGGTGGTCGACGTCGCGCGCATGAAAACCGCCAGCAAGGCCAAG
AACCCCATGGCGCGCTTTGAAAACATGGATACCGAGTATGTCGCCAGGGC
GGCGCCCAAAGTCAGGGGCGCTTTTACTCGAACTGTTGACTGTCGCGCTT
GTGATACTGTGGGCGTTGTTCAGTGCGACGCGTGCGAGGGCGAGGGCGAG
GATGAGGGATATGTGTGCGCGCTTTGTGCCGGTACGGGCAAACTGCGTTG
TGGTGATTGTCAGGGCACGGGCATTGTCACCGTTCGTACACGGTAA
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