Ggra4300.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4300.t1
Unique NameGgra4300.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:310484..312116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4300Ggra4300Gracilaria gracilis GNS1m malegenetig00000022_pilon 310484..312116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4300.t1Ggra4300.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 310484..312116 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4300.t1.stop1Ggra4300.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 310484..310486 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4300.t1.CDS1Ggra4300.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 310484..311799 -
Ggra4300.t1.CDS2Ggra4300.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000022_pilon 311912..312116 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4300.t1.exon1Ggra4300.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 310484..311799 -
Ggra4300.t1.exon2Ggra4300.t1.exon2Gracilaria gracilis GNS1m maleexontig00000022_pilon 311912..312116 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4300.t1.intron1Ggra4300.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000022_pilon 311800..311911 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4300.t1.start1Ggra4300.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 312114..312116 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4300.t1 ID=Ggra4300.t1|Name=Ggra4300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp
MALSLKLFLSVFLLLLPFVRAVSAHVNARESPIDASYLKRITSSKVFVAP
PNRTNKPGSVSYVSSSIVEHTPDQEILETNNTLPNSFLRQLLHDSGGATR
GKLNFEICSTSSECAGYRRCQVIVEGELFECSGQDDCRCVSPDLSCSSND
DCDEGERCFALDEDSVTCISNKLVPEPVTTSEETVLPAGTNALSSSIGDK
LNFELCSTTSECAGARLCLVVVEDEIVKCSGQEDCVCVSRDIRCTSNDDC
DEGEHCFAFDEDSVVCISNKIELEPSPTSDETVPPTRTSPLPSVGDKLNF
EKCSMTSECVGDRQCQVIVNDEIVKCSGQEDCLCVSRDIRCTSNDDCDEG
ERCYALDEDSKVCISNKVELDSESGPEETGPPESASTSSTSMGAKLNFEV
CSTTLECSGDRRCQGIVDDVIVECSGEDDCLCVSDNFRCTTDDDCDDGES
CCTVDEDSIVCISDKIVVVLEPDPSPLPALNGLRDVNDILLRLLTNVETL
TTVDQI*
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spliced messenger RNA

>Ggra4300.t1 ID=Ggra4300.t1|Name=Ggra4300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000022_pilon:310484..312116- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTTCTCTGAAACTGTTTCTATCCGTCTTCCTCCTCCTTCTACC
CTTCGTCCGAGCCGTTTCGGCACACGTCAATGCACGGGAGTCGCCCATCG
ACGCTTCATACCTCAAGCGCATTACGAGCTCAAAGGTATTCGTTGCGCCG
CCAAACAGAACAAACAAACCGGGGTCTGTCTCATATGTATCTTCGTCCAT
TGTGGAGCATACGCCGGATCAAGAGATTCTCGAAACAAACAACACGCTTC
CGAATTCTTTCCTTCGGCAATTGCTTCATGATTCTGGAGGAGCAACAAGG
GGGAAATTGAACTTCGAAATATGCTCCACGAGCTCCGAGTGTGCAGGATA
CCGCCGGTGCCAAGTCATTGTGGAAGGTGAACTCTTCGAATGCTCCGGAC
AGGATGATTGTCGCTGTGTGTCTCCTGATCTGAGTTGTTCTTCGAATGAC
GACTGTGATGAAGGCGAACGCTGTTTTGCACTTGATGAAGACAGTGTCAC
TTGTATTTCGAACAAACTAGTGCCCGAACCCGTTACCACCTCCGAGGAAA
CAGTTCTCCCAGCCGGAACAAATGCTCTATCTTCATCCATAGGAGACAAG
CTGAACTTTGAACTATGTTCCACGACTTCTGAATGTGCGGGAGCTCGCCT
ATGTTTAGTTGTTGTGGAAGATGAAATTGTCAAATGTTCTGGGCAGGAGG
ATTGTGTCTGTGTGTCTCGTGATATCAGATGTACTTCAAATGACGACTGT
GATGAAGGCGAACACTGTTTTGCATTTGACGAAGACAGTGTTGTTTGTAT
TTCGAACAAAATAGAGCTCGAACCCAGTCCCACCTCTGACGAAACAGTTC
CTCCGACTAGAACATCTCCTTTACCATCGGTGGGAGACAAGCTGAACTTC
GAAAAATGTTCCATGACTTCTGAGTGTGTAGGCGATCGCCAATGTCAAGT
GATTGTGAACGATGAAATTGTCAAATGTTCTGGGCAGGAGGATTGTCTCT
GTGTGTCTCGTGATATCAGATGTACTTCAAATGACGACTGTGATGAAGGC
GAACGTTGTTATGCGCTTGATGAAGACTCTAAAGTTTGTATTTCGAACAA
GGTGGAGCTCGATTCTGAATCCGGACCTGAGGAAACAGGTCCTCCAGAAA
GTGCAAGTACATCTTCAACATCGATGGGGGCCAAACTCAATTTCGAAGTA
TGCTCCACAACTTTGGAGTGTTCAGGGGATCGGCGGTGTCAAGGGATTGT
GGACGACGTCATTGTCGAATGTTCCGGAGAGGATGATTGTCTCTGTGTGT
CTGACAATTTCAGATGTACTACGGATGATGACTGTGATGACGGTGAAAGC
TGTTGCACAGTTGATGAAGACAGTATTGTTTGCATTTCGGACAAGATTGT
TGTTGTTCTTGAACCTGATCCCAGTCCACTTCCAGCTTTAAATGGTCTCA
GAGACGTGAATGATATACTACTTCGTTTGTTGACGAATGTGGAAACACTG
ACCACTGTAGATCAAATTTGA
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protein sequence of Ggra4300.t1

>Ggra4300.t1 ID=Ggra4300.t1|Name=Ggra4300.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=507bp
MALSLKLFLSVFLLLLPFVRAVSAHVNARESPIDASYLKRITSSKVFVAP
PNRTNKPGSVSYVSSSIVEHTPDQEILETNNTLPNSFLRQLLHDSGGATR
GKLNFEICSTSSECAGYRRCQVIVEGELFECSGQDDCRCVSPDLSCSSND
DCDEGERCFALDEDSVTCISNKLVPEPVTTSEETVLPAGTNALSSSIGDK
LNFELCSTTSECAGARLCLVVVEDEIVKCSGQEDCVCVSRDIRCTSNDDC
DEGEHCFAFDEDSVVCISNKIELEPSPTSDETVPPTRTSPLPSVGDKLNF
EKCSMTSECVGDRQCQVIVNDEIVKCSGQEDCLCVSRDIRCTSNDDCDEG
ERCYALDEDSKVCISNKVELDSESGPEETGPPESASTSSTSMGAKLNFEV
CSTTLECSGDRRCQGIVDDVIVECSGEDDCLCVSDNFRCTTDDDCDDGES
CCTVDEDSIVCISDKIVVVLEPDPSPLPALNGLRDVNDILLRLLTNVETL
TTVDQI*
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mRNA from alignment at tig00000022_pilon:310484..312116-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4300.t1 ID=Ggra4300.t1|Name=Ggra4300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1633bp|location=Sequence derived from alignment at tig00000022_pilon:310484..312116- (Gracilaria gracilis GNS1m male)
ATGGCTCTTTCTCTGAAACTGTTTCTATCCGTCTTCCTCCTCCTTCTACC
CTTCGTCCGAGCCGTTTCGGCACACGTCAATGCACGGGAGTCGCCCATCG
ACGCTTCATACCTCAAGCGCATTACGAGCTCAAAGGTATTCGTTGCGCCG
CCAAACAGAACAAACAAACCGGGGTCTGTCTCATATGTATCTTCGTCCAT
TGTGGGTAAGCTAACCCAAAATTTTCGTTGTGCACACTAACCCAACATTT
TTTTAAAAGGACTAACGTAGTGCGGTCATCACCTTTCGCATTCAAGAGTT
CTTTTCGAAATCGATAGAGCATACGCCGGATCAAGAGATTCTCGAAACAA
ACAACACGCTTCCGAATTCTTTCCTTCGGCAATTGCTTCATGATTCTGGA
GGAGCAACAAGGGGGAAATTGAACTTCGAAATATGCTCCACGAGCTCCGA
GTGTGCAGGATACCGCCGGTGCCAAGTCATTGTGGAAGGTGAACTCTTCG
AATGCTCCGGACAGGATGATTGTCGCTGTGTGTCTCCTGATCTGAGTTGT
TCTTCGAATGACGACTGTGATGAAGGCGAACGCTGTTTTGCACTTGATGA
AGACAGTGTCACTTGTATTTCGAACAAACTAGTGCCCGAACCCGTTACCA
CCTCCGAGGAAACAGTTCTCCCAGCCGGAACAAATGCTCTATCTTCATCC
ATAGGAGACAAGCTGAACTTTGAACTATGTTCCACGACTTCTGAATGTGC
GGGAGCTCGCCTATGTTTAGTTGTTGTGGAAGATGAAATTGTCAAATGTT
CTGGGCAGGAGGATTGTGTCTGTGTGTCTCGTGATATCAGATGTACTTCA
AATGACGACTGTGATGAAGGCGAACACTGTTTTGCATTTGACGAAGACAG
TGTTGTTTGTATTTCGAACAAAATAGAGCTCGAACCCAGTCCCACCTCTG
ACGAAACAGTTCCTCCGACTAGAACATCTCCTTTACCATCGGTGGGAGAC
AAGCTGAACTTCGAAAAATGTTCCATGACTTCTGAGTGTGTAGGCGATCG
CCAATGTCAAGTGATTGTGAACGATGAAATTGTCAAATGTTCTGGGCAGG
AGGATTGTCTCTGTGTGTCTCGTGATATCAGATGTACTTCAAATGACGAC
TGTGATGAAGGCGAACGTTGTTATGCGCTTGATGAAGACTCTAAAGTTTG
TATTTCGAACAAGGTGGAGCTCGATTCTGAATCCGGACCTGAGGAAACAG
GTCCTCCAGAAAGTGCAAGTACATCTTCAACATCGATGGGGGCCAAACTC
AATTTCGAAGTATGCTCCACAACTTTGGAGTGTTCAGGGGATCGGCGGTG
TCAAGGGATTGTGGACGACGTCATTGTCGAATGTTCCGGAGAGGATGATT
GTCTCTGTGTGTCTGACAATTTCAGATGTACTACGGATGATGACTGTGAT
GACGGTGAAAGCTGTTGCACAGTTGATGAAGACAGTATTGTTTGCATTTC
GGACAAGATTGTTGTTGTTCTTGAACCTGATCCCAGTCCACTTCCAGCTT
TAAATGGTCTCAGAGACGTGAATGATATACTACTTCGTTTGTTGACGAAT
GTGGAAACACTGACCACTGTAGATCAAATTTGA
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Coding sequence (CDS) from alignment at tig00000022_pilon:310484..312116-

>Ggra4300.t1 ID=Ggra4300.t1|Name=Ggra4300.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00000022_pilon:310484..312116- (Gracilaria gracilis GNS1m male)
ATGGCTCTTTCTCTGAAACTGTTTCTATCCGTCTTCCTCCTCCTTCTACC
CTTCGTCCGAGCCGTTTCGGCACACGTCAATGCACGGGAGTCGCCCATCG
ACGCTTCATACCTCAAGCGCATTACGAGCTCAAAGGTATTCGTTGCGCCG
CCAAACAGAACAAACAAACCGGGGTCTGTCTCATATGTATCTTCGTCCAT
TGTGGAGCATACGCCGGATCAAGAGATTCTCGAAACAAACAACACGCTTC
CGAATTCTTTCCTTCGGCAATTGCTTCATGATTCTGGAGGAGCAACAAGG
GGGAAATTGAACTTCGAAATATGCTCCACGAGCTCCGAGTGTGCAGGATA
CCGCCGGTGCCAAGTCATTGTGGAAGGTGAACTCTTCGAATGCTCCGGAC
AGGATGATTGTCGCTGTGTGTCTCCTGATCTGAGTTGTTCTTCGAATGAC
GACTGTGATGAAGGCGAACGCTGTTTTGCACTTGATGAAGACAGTGTCAC
TTGTATTTCGAACAAACTAGTGCCCGAACCCGTTACCACCTCCGAGGAAA
CAGTTCTCCCAGCCGGAACAAATGCTCTATCTTCATCCATAGGAGACAAG
CTGAACTTTGAACTATGTTCCACGACTTCTGAATGTGCGGGAGCTCGCCT
ATGTTTAGTTGTTGTGGAAGATGAAATTGTCAAATGTTCTGGGCAGGAGG
ATTGTGTCTGTGTGTCTCGTGATATCAGATGTACTTCAAATGACGACTGT
GATGAAGGCGAACACTGTTTTGCATTTGACGAAGACAGTGTTGTTTGTAT
TTCGAACAAAATAGAGCTCGAACCCAGTCCCACCTCTGACGAAACAGTTC
CTCCGACTAGAACATCTCCTTTACCATCGGTGGGAGACAAGCTGAACTTC
GAAAAATGTTCCATGACTTCTGAGTGTGTAGGCGATCGCCAATGTCAAGT
GATTGTGAACGATGAAATTGTCAAATGTTCTGGGCAGGAGGATTGTCTCT
GTGTGTCTCGTGATATCAGATGTACTTCAAATGACGACTGTGATGAAGGC
GAACGTTGTTATGCGCTTGATGAAGACTCTAAAGTTTGTATTTCGAACAA
GGTGGAGCTCGATTCTGAATCCGGACCTGAGGAAACAGGTCCTCCAGAAA
GTGCAAGTACATCTTCAACATCGATGGGGGCCAAACTCAATTTCGAAGTA
TGCTCCACAACTTTGGAGTGTTCAGGGGATCGGCGGTGTCAAGGGATTGT
GGACGACGTCATTGTCGAATGTTCCGGAGAGGATGATTGTCTCTGTGTGT
CTGACAATTTCAGATGTACTACGGATGATGACTGTGATGACGGTGAAAGC
TGTTGCACAGTTGATGAAGACAGTATTGTTTGCATTTCGGACAAGATTGT
TGTTGTTCTTGAACCTGATCCCAGTCCACTTCCAGCTTTAAATGGTCTCA
GAGACGTGAATGATATACTACTTCGTTTGTTGACGAATGTGGAAACACTG
ACCACTGTAGATCAAATTTGA
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