Ggra4286.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4286.t1
Unique NameGgra4286.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000022_piloncontigtig00000022_pilon:95976..96839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4286Ggra4286Gracilaria gracilis GNS1m malegenetig00000022_pilon 95976..96839 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4286.t1.start1Ggra4286.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000022_pilon 95976..95978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4286.t1.CDS1Ggra4286.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000022_pilon 95976..96839 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4286.t1.exon1Ggra4286.t1.exon1Gracilaria gracilis GNS1m maleexontig00000022_pilon 95976..96839 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4286.t1.stop1Ggra4286.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000022_pilon 96837..96839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4286.t1Ggra4286.t1Gracilaria gracilis GNS1m malepolypeptidetig00000022_pilon 95976..96839 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4286.t1 ID=Ggra4286.t1|Name=Ggra4286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MVFWALDTYAKVSAEEESQLRVLLLFAAGNLLNVCSESLRRDYVFASLAD
ILTEDMDLLHSNLHFLESKQLMAIVGRRIIPLNYVKTSEALSDIKPHMFS
LFMQLVCLENDILLDEEDLYLLSKLEGAEHFPFWDYELQLRTHGICVQLC
KSAEVLVPGVLSFRYGENSFLLHVEPSRLSALGFSVLSFILVPNDKTKKA
MLKLVALTESFTNRFIKAFREEGKRLLDHGCCNGEPQRVTAEKVGYSAGE
KHHSKVFIPLGWTYNLEVPPQIPPRPWNSWKYWSPAW*
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spliced messenger RNA

>Ggra4286.t1 ID=Ggra4286.t1|Name=Ggra4286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000022_pilon:95976..96839+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTTTGGGCTCTTGACACATATGCAAAGGTTTCCGCTGAAGAAGA
GTCTCAGCTTAGAGTCTTATTGTTATTTGCCGCTGGGAATTTGCTGAATG
TCTGCTCAGAGAGCCTCAGAAGGGATTATGTCTTCGCTTCCCTGGCTGAC
ATACTGACAGAAGACATGGACCTGCTTCACTCAAATCTACATTTCCTTGA
GAGCAAGCAGCTCATGGCCATAGTTGGTCGGCGCATTATCCCGTTGAACT
ACGTTAAGACGAGTGAAGCTTTGAGCGATATCAAGCCGCACATGTTTTCG
CTTTTTATGCAACTTGTGTGTTTGGAAAACGATATCTTGCTTGATGAAGA
AGATTTGTATCTGCTTTCAAAACTGGAAGGTGCCGAACATTTTCCGTTTT
GGGATTACGAGCTACAGTTACGAACCCACGGGATTTGTGTGCAACTTTGC
AAGAGCGCGGAAGTTCTTGTACCCGGAGTTCTGTCATTTCGGTATGGGGA
GAATTCGTTCTTGCTCCATGTTGAACCGTCTCGTCTTAGCGCTCTAGGAT
TCTCTGTCTTATCTTTCATATTGGTCCCGAACGACAAAACGAAGAAAGCT
ATGCTAAAACTAGTGGCCCTTACCGAATCATTCACCAACCGTTTCATTAA
AGCTTTCAGAGAAGAGGGGAAGCGCCTGCTTGATCATGGTTGTTGTAATG
GAGAACCACAGCGAGTGACAGCGGAAAAGGTCGGCTACAGTGCGGGAGAA
AAACACCACAGCAAAGTATTCATTCCTCTCGGATGGACCTACAATCTCGA
AGTACCCCCACAAATTCCTCCAAGACCATGGAATAGTTGGAAGTATTGGA
GTCCTGCTTGGTAA
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protein sequence of Ggra4286.t1

>Ggra4286.t1 ID=Ggra4286.t1|Name=Ggra4286.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MVFWALDTYAKVSAEEESQLRVLLLFAAGNLLNVCSESLRRDYVFASLAD
ILTEDMDLLHSNLHFLESKQLMAIVGRRIIPLNYVKTSEALSDIKPHMFS
LFMQLVCLENDILLDEEDLYLLSKLEGAEHFPFWDYELQLRTHGICVQLC
KSAEVLVPGVLSFRYGENSFLLHVEPSRLSALGFSVLSFILVPNDKTKKA
MLKLVALTESFTNRFIKAFREEGKRLLDHGCCNGEPQRVTAEKVGYSAGE
KHHSKVFIPLGWTYNLEVPPQIPPRPWNSWKYWSPAW*
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mRNA from alignment at tig00000022_pilon:95976..96839+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4286.t1 ID=Ggra4286.t1|Name=Ggra4286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000022_pilon:95976..96839+ (Gracilaria gracilis GNS1m male)
ATGGTCTTTTGGGCTCTTGACACATATGCAAAGGTTTCCGCTGAAGAAGA
GTCTCAGCTTAGAGTCTTATTGTTATTTGCCGCTGGGAATTTGCTGAATG
TCTGCTCAGAGAGCCTCAGAAGGGATTATGTCTTCGCTTCCCTGGCTGAC
ATACTGACAGAAGACATGGACCTGCTTCACTCAAATCTACATTTCCTTGA
GAGCAAGCAGCTCATGGCCATAGTTGGTCGGCGCATTATCCCGTTGAACT
ACGTTAAGACGAGTGAAGCTTTGAGCGATATCAAGCCGCACATGTTTTCG
CTTTTTATGCAACTTGTGTGTTTGGAAAACGATATCTTGCTTGATGAAGA
AGATTTGTATCTGCTTTCAAAACTGGAAGGTGCCGAACATTTTCCGTTTT
GGGATTACGAGCTACAGTTACGAACCCACGGGATTTGTGTGCAACTTTGC
AAGAGCGCGGAAGTTCTTGTACCCGGAGTTCTGTCATTTCGGTATGGGGA
GAATTCGTTCTTGCTCCATGTTGAACCGTCTCGTCTTAGCGCTCTAGGAT
TCTCTGTCTTATCTTTCATATTGGTCCCGAACGACAAAACGAAGAAAGCT
ATGCTAAAACTAGTGGCCCTTACCGAATCATTCACCAACCGTTTCATTAA
AGCTTTCAGAGAAGAGGGGAAGCGCCTGCTTGATCATGGTTGTTGTAATG
GAGAACCACAGCGAGTGACAGCGGAAAAGGTCGGCTACAGTGCGGGAGAA
AAACACCACAGCAAAGTATTCATTCCTCTCGGATGGACCTACAATCTCGA
AGTACCCCCACAAATTCCTCCAAGACCATGGAATAGTTGGAAGTATTGGA
GTCCTGCTTGGTAA
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Coding sequence (CDS) from alignment at tig00000022_pilon:95976..96839+

>Ggra4286.t1 ID=Ggra4286.t1|Name=Ggra4286.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000022_pilon:95976..96839+ (Gracilaria gracilis GNS1m male)
ATGGTCTTTTGGGCTCTTGACACATATGCAAAGGTTTCCGCTGAAGAAGA
GTCTCAGCTTAGAGTCTTATTGTTATTTGCCGCTGGGAATTTGCTGAATG
TCTGCTCAGAGAGCCTCAGAAGGGATTATGTCTTCGCTTCCCTGGCTGAC
ATACTGACAGAAGACATGGACCTGCTTCACTCAAATCTACATTTCCTTGA
GAGCAAGCAGCTCATGGCCATAGTTGGTCGGCGCATTATCCCGTTGAACT
ACGTTAAGACGAGTGAAGCTTTGAGCGATATCAAGCCGCACATGTTTTCG
CTTTTTATGCAACTTGTGTGTTTGGAAAACGATATCTTGCTTGATGAAGA
AGATTTGTATCTGCTTTCAAAACTGGAAGGTGCCGAACATTTTCCGTTTT
GGGATTACGAGCTACAGTTACGAACCCACGGGATTTGTGTGCAACTTTGC
AAGAGCGCGGAAGTTCTTGTACCCGGAGTTCTGTCATTTCGGTATGGGGA
GAATTCGTTCTTGCTCCATGTTGAACCGTCTCGTCTTAGCGCTCTAGGAT
TCTCTGTCTTATCTTTCATATTGGTCCCGAACGACAAAACGAAGAAAGCT
ATGCTAAAACTAGTGGCCCTTACCGAATCATTCACCAACCGTTTCATTAA
AGCTTTCAGAGAAGAGGGGAAGCGCCTGCTTGATCATGGTTGTTGTAATG
GAGAACCACAGCGAGTGACAGCGGAAAAGGTCGGCTACAGTGCGGGAGAA
AAACACCACAGCAAAGTATTCATTCCTCTCGGATGGACCTACAATCTCGA
AGTACCCCCACAAATTCCTCCAAGACCATGGAATAGTTGGAAGTATTGGA
GTCCTGCTTGGTAA
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