Ggra8954.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8954.t1
Unique Name	Ggra8954.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	294

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000860_pilon	contig	tig00000860_pilon:965549..966430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8954	Ggra8954	Gracilaria gracilis GNS1m male	gene	tig00000860_pilon 965549..966430 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8954.t1.start1	Ggra8954.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000860_pilon 965549..965551 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8954.t1.CDS1	Ggra8954.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000860_pilon 965549..966430 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8954.t1.exon1	Ggra8954.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000860_pilon 965549..966430 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8954.t1.stop1	Ggra8954.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000860_pilon 966428..966430 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8954.t1	Ggra8954.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000860_pilon 965549..966430 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000860_pilon:965549..966430+
coding sequence from alignment at tig00000860_pilon:965549..966430+

mRNA sequence

>Ggra8954.t1 ID=Ggra8954.t1|Name=Ggra8954.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MDNQGDTSLRPETNAEHTQESDEQSNEASENPQADVADTVAPSSTEREGS
VNSSDSSPLNVPQTETSEQASEQSVQTNARIATVIYDMLIRGSGDNTENE
TYYTELINNFPVSAVLAREYATHVAETIFQPMQYTIYAQEAMRRRRMILR
RISISSMSMLFGIGSALVASLWLWFVISLAIAATLARAVRSDAFTSAVHF
FASPILKTEGLTRLLYEWVFNFMNQENPIVAIRNHGSMAGMRTTFSPNLH
ITTVFLIPVVIGLVYGIIGGLLAITINMGLNTIGGIRYEAHDD*

spliced messenger RNA

>Ggra8954.t1 ID=Ggra8954.t1|Name=Ggra8954.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000860_pilon:965549..966430+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACCAAGGAGATACAAGCTTACGGCCCGAAACGAATGCCGAACA
CACCCAAGAGTCTGATGAGCAATCCAATGAAGCATCCGAAAATCCGCAGG
CCGATGTCGCAGATACAGTAGCTCCCTCCAGTACCGAGAGAGAAGGTTCT
GTCAACTCATCCGATTCCTCACCGCTTAACGTACCACAGACCGAAACAAG
CGAGCAAGCATCAGAGCAATCGGTTCAAACTAACGCCCGCATCGCAACCG
TCATATACGACATGTTAATCCGCGGAAGCGGCGACAACACGGAGAACGAA
ACGTACTACACAGAGCTCATAAACAACTTCCCCGTATCCGCAGTATTGGC
ACGCGAATACGCCACACATGTGGCGGAGACCATTTTCCAACCAATGCAAT
ATACAATATACGCGCAAGAAGCCATGCGACGACGGAGGATGATTTTGCGA
CGAATTAGCATCTCCTCCATGTCCATGCTCTTCGGAATAGGAAGTGCACT
TGTAGCCTCATTGTGGCTGTGGTTTGTAATCTCGCTAGCGATTGCAGCTA
CTCTAGCACGCGCTGTTAGAAGTGATGCATTCACTTCCGCAGTACATTTT
TTCGCAAGTCCAATACTGAAGACTGAAGGCCTGACACGGCTCTTGTATGA
ATGGGTGTTCAACTTTATGAACCAGGAGAATCCTATCGTTGCAATTCGAA
ATCACGGTTCAATGGCAGGGATGAGGACGACTTTCAGTCCCAATCTACAC
ATTACGACTGTATTTCTTATTCCAGTTGTAATTGGCCTCGTCTATGGAAT
CATCGGGGGTCTGCTTGCGATTACCATCAACATGGGTCTCAATACGATTG
GAGGTATCCGATATGAAGCTCATGACGATTAG

protein sequence of Ggra8954.t1

>Ggra8954.t1 ID=Ggra8954.t1|Name=Ggra8954.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MDNQGDTSLRPETNAEHTQESDEQSNEASENPQADVADTVAPSSTEREGS
VNSSDSSPLNVPQTETSEQASEQSVQTNARIATVIYDMLIRGSGDNTENE
TYYTELINNFPVSAVLAREYATHVAETIFQPMQYTIYAQEAMRRRRMILR
RISISSMSMLFGIGSALVASLWLWFVISLAIAATLARAVRSDAFTSAVHF
FASPILKTEGLTRLLYEWVFNFMNQENPIVAIRNHGSMAGMRTTFSPNLH
ITTVFLIPVVIGLVYGIIGGLLAITINMGLNTIGGIRYEAHDD*

mRNA from alignment at tig00000860_pilon:965549..966430+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8954.t1 ID=Ggra8954.t1|Name=Ggra8954.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000860_pilon:965549..966430+ (Gracilaria gracilis GNS1m male)
ATGGACAACCAAGGAGATACAAGCTTACGGCCCGAAACGAATGCCGAACA
CACCCAAGAGTCTGATGAGCAATCCAATGAAGCATCCGAAAATCCGCAGG
CCGATGTCGCAGATACAGTAGCTCCCTCCAGTACCGAGAGAGAAGGTTCT
GTCAACTCATCCGATTCCTCACCGCTTAACGTACCACAGACCGAAACAAG
CGAGCAAGCATCAGAGCAATCGGTTCAAACTAACGCCCGCATCGCAACCG
TCATATACGACATGTTAATCCGCGGAAGCGGCGACAACACGGAGAACGAA
ACGTACTACACAGAGCTCATAAACAACTTCCCCGTATCCGCAGTATTGGC
ACGCGAATACGCCACACATGTGGCGGAGACCATTTTCCAACCAATGCAAT
ATACAATATACGCGCAAGAAGCCATGCGACGACGGAGGATGATTTTGCGA
CGAATTAGCATCTCCTCCATGTCCATGCTCTTCGGAATAGGAAGTGCACT
TGTAGCCTCATTGTGGCTGTGGTTTGTAATCTCGCTAGCGATTGCAGCTA
CTCTAGCACGCGCTGTTAGAAGTGATGCATTCACTTCCGCAGTACATTTT
TTCGCAAGTCCAATACTGAAGACTGAAGGCCTGACACGGCTCTTGTATGA
ATGGGTGTTCAACTTTATGAACCAGGAGAATCCTATCGTTGCAATTCGAA
ATCACGGTTCAATGGCAGGGATGAGGACGACTTTCAGTCCCAATCTACAC
ATTACGACTGTATTTCTTATTCCAGTTGTAATTGGCCTCGTCTATGGAAT
CATCGGGGGTCTGCTTGCGATTACCATCAACATGGGTCTCAATACGATTG
GAGGTATCCGATATGAAGCTCATGACGATTAG

Coding sequence (CDS) from alignment at tig00000860_pilon:965549..966430+

>Ggra8954.t1 ID=Ggra8954.t1|Name=Ggra8954.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000860_pilon:965549..966430+ (Gracilaria gracilis GNS1m male)
ATGGACAACCAAGGAGATACAAGCTTACGGCCCGAAACGAATGCCGAACA
CACCCAAGAGTCTGATGAGCAATCCAATGAAGCATCCGAAAATCCGCAGG
CCGATGTCGCAGATACAGTAGCTCCCTCCAGTACCGAGAGAGAAGGTTCT
GTCAACTCATCCGATTCCTCACCGCTTAACGTACCACAGACCGAAACAAG
CGAGCAAGCATCAGAGCAATCGGTTCAAACTAACGCCCGCATCGCAACCG
TCATATACGACATGTTAATCCGCGGAAGCGGCGACAACACGGAGAACGAA
ACGTACTACACAGAGCTCATAAACAACTTCCCCGTATCCGCAGTATTGGC
ACGCGAATACGCCACACATGTGGCGGAGACCATTTTCCAACCAATGCAAT
ATACAATATACGCGCAAGAAGCCATGCGACGACGGAGGATGATTTTGCGA
CGAATTAGCATCTCCTCCATGTCCATGCTCTTCGGAATAGGAAGTGCACT
TGTAGCCTCATTGTGGCTGTGGTTTGTAATCTCGCTAGCGATTGCAGCTA
CTCTAGCACGCGCTGTTAGAAGTGATGCATTCACTTCCGCAGTACATTTT
TTCGCAAGTCCAATACTGAAGACTGAAGGCCTGACACGGCTCTTGTATGA
ATGGGTGTTCAACTTTATGAACCAGGAGAATCCTATCGTTGCAATTCGAA
ATCACGGTTCAATGGCAGGGATGAGGACGACTTTCAGTCCCAATCTACAC
ATTACGACTGTATTTCTTATTCCAGTTGTAATTGGCCTCGTCTATGGAAT
CATCGGGGGTCTGCTTGCGATTACCATCAACATGGGTCTCAATACGATTG
GAGGTATCCGATATGAAGCTCATGACGATTAG