Ggra8780.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8780.t1
Unique NameGgra8780.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:101255..102274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue8.76e-73
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8780Ggra8780Gracilaria gracilis GNS1m malegenetig00000860_pilon 101255..102274 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8780.t1.stop1Ggra8780.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000860_pilon 101255..101257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8780.t1.CDS1Ggra8780.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000860_pilon 101255..102274 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8780.t1.exon1Ggra8780.t1.exon1Gracilaria gracilis GNS1m maleexontig00000860_pilon 101255..102274 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8780.t1.start1Ggra8780.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000860_pilon 102272..102274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8780.t1Ggra8780.t1Gracilaria gracilis GNS1m malepolypeptidetig00000860_pilon 101255..102274 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8780.t1 ID=Ggra8780.t1|Name=Ggra8780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=340bp
MPRLFVVLTLLRILSHASFSSAQAVWQTVNIDGSLPTARHEACFVMVKGK
GYLIGGRGNKPVDIFDPATSTWNKGPGPGIQLHHMQCVAYGDEVWIPSAW
TGGFPREKNVDKIYIYNTRTNSWYTRPGLPEYRRRGGGAAVLYDMKIYVI
GGNRGGHGQHATSLGWVDYYDIRTSKWVTNLQDLPDARDHVGGALVNWKK
ICVAGGRDGGVKGFFTATKSKTFCFNLKQDGTGWWQDMKAPIPAGRGGAS
YGMNCDGHLVIAGGERNDAFARVDIFDGVQWRTTANMKQKRHGSGLAVSN
CMCGKIFIASGSGGRGGGPELKTTEVYHPDGNTNPCAFY*
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spliced messenger RNA

>Ggra8780.t1 ID=Ggra8780.t1|Name=Ggra8780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000860_pilon:101255..102274- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGTCTCTTCGTCGTTCTTACACTGTTACGCATTCTTTCGCATGC
GTCGTTCAGCTCCGCGCAGGCCGTGTGGCAAACGGTGAACATCGATGGCT
CCCTGCCAACCGCTAGGCATGAAGCCTGCTTTGTCATGGTGAAAGGGAAG
GGCTATTTGATCGGCGGACGTGGCAATAAACCAGTTGACATCTTCGACCC
AGCCACCAGCACTTGGAACAAGGGGCCCGGTCCAGGCATACAGTTACACC
ACATGCAATGCGTTGCGTACGGTGACGAAGTATGGATTCCATCTGCATGG
ACCGGTGGCTTTCCCCGCGAGAAAAACGTCGACAAAATCTACATATACAA
CACCAGAACCAACTCGTGGTACACCAGACCGGGGCTGCCAGAGTACCGTC
GTCGTGGTGGAGGCGCCGCCGTGTTGTATGACATGAAAATCTATGTCATC
GGTGGCAATCGCGGCGGGCATGGACAGCATGCAACTTCGCTAGGTTGGGT
AGATTATTACGACATTCGCACCAGCAAATGGGTCACCAATTTGCAAGACC
TTCCAGATGCCCGCGACCATGTGGGCGGTGCGCTGGTGAACTGGAAGAAG
ATTTGCGTGGCCGGCGGAAGGGACGGAGGTGTGAAGGGCTTCTTCACCGC
CACGAAAAGCAAGACGTTTTGCTTCAACCTCAAGCAAGACGGCACTGGGT
GGTGGCAAGACATGAAAGCACCCATTCCTGCGGGACGGGGGGGCGCTTCT
TATGGTATGAATTGCGACGGACATTTGGTGATTGCCGGTGGTGAACGGAA
CGATGCTTTTGCACGGGTTGACATCTTCGATGGGGTGCAGTGGAGAACGA
CGGCTAATATGAAGCAAAAGAGACATGGGTCGGGGCTAGCGGTATCAAAC
TGTATGTGCGGAAAGATTTTCATTGCGTCGGGTAGTGGAGGTCGCGGCGG
AGGTCCGGAACTAAAGACGACTGAAGTATATCATCCAGATGGTAATACAA
ATCCTTGCGCGTTCTACTAA
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protein sequence of Ggra8780.t1

>Ggra8780.t1 ID=Ggra8780.t1|Name=Ggra8780.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=340bp
MPRLFVVLTLLRILSHASFSSAQAVWQTVNIDGSLPTARHEACFVMVKGK
GYLIGGRGNKPVDIFDPATSTWNKGPGPGIQLHHMQCVAYGDEVWIPSAW
TGGFPREKNVDKIYIYNTRTNSWYTRPGLPEYRRRGGGAAVLYDMKIYVI
GGNRGGHGQHATSLGWVDYYDIRTSKWVTNLQDLPDARDHVGGALVNWKK
ICVAGGRDGGVKGFFTATKSKTFCFNLKQDGTGWWQDMKAPIPAGRGGAS
YGMNCDGHLVIAGGERNDAFARVDIFDGVQWRTTANMKQKRHGSGLAVSN
CMCGKIFIASGSGGRGGGPELKTTEVYHPDGNTNPCAFY*
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mRNA from alignment at tig00000860_pilon:101255..102274-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8780.t1 ID=Ggra8780.t1|Name=Ggra8780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00000860_pilon:101255..102274- (Gracilaria gracilis GNS1m male)
ATGCCGCGTCTCTTCGTCGTTCTTACACTGTTACGCATTCTTTCGCATGC
GTCGTTCAGCTCCGCGCAGGCCGTGTGGCAAACGGTGAACATCGATGGCT
CCCTGCCAACCGCTAGGCATGAAGCCTGCTTTGTCATGGTGAAAGGGAAG
GGCTATTTGATCGGCGGACGTGGCAATAAACCAGTTGACATCTTCGACCC
AGCCACCAGCACTTGGAACAAGGGGCCCGGTCCAGGCATACAGTTACACC
ACATGCAATGCGTTGCGTACGGTGACGAAGTATGGATTCCATCTGCATGG
ACCGGTGGCTTTCCCCGCGAGAAAAACGTCGACAAAATCTACATATACAA
CACCAGAACCAACTCGTGGTACACCAGACCGGGGCTGCCAGAGTACCGTC
GTCGTGGTGGAGGCGCCGCCGTGTTGTATGACATGAAAATCTATGTCATC
GGTGGCAATCGCGGCGGGCATGGACAGCATGCAACTTCGCTAGGTTGGGT
AGATTATTACGACATTCGCACCAGCAAATGGGTCACCAATTTGCAAGACC
TTCCAGATGCCCGCGACCATGTGGGCGGTGCGCTGGTGAACTGGAAGAAG
ATTTGCGTGGCCGGCGGAAGGGACGGAGGTGTGAAGGGCTTCTTCACCGC
CACGAAAAGCAAGACGTTTTGCTTCAACCTCAAGCAAGACGGCACTGGGT
GGTGGCAAGACATGAAAGCACCCATTCCTGCGGGACGGGGGGGCGCTTCT
TATGGTATGAATTGCGACGGACATTTGGTGATTGCCGGTGGTGAACGGAA
CGATGCTTTTGCACGGGTTGACATCTTCGATGGGGTGCAGTGGAGAACGA
CGGCTAATATGAAGCAAAAGAGACATGGGTCGGGGCTAGCGGTATCAAAC
TGTATGTGCGGAAAGATTTTCATTGCGTCGGGTAGTGGAGGTCGCGGCGG
AGGTCCGGAACTAAAGACGACTGAAGTATATCATCCAGATGGTAATACAA
ATCCTTGCGCGTTCTACTAA
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Coding sequence (CDS) from alignment at tig00000860_pilon:101255..102274-

>Ggra8780.t1 ID=Ggra8780.t1|Name=Ggra8780.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00000860_pilon:101255..102274- (Gracilaria gracilis GNS1m male)
ATGCCGCGTCTCTTCGTCGTTCTTACACTGTTACGCATTCTTTCGCATGC
GTCGTTCAGCTCCGCGCAGGCCGTGTGGCAAACGGTGAACATCGATGGCT
CCCTGCCAACCGCTAGGCATGAAGCCTGCTTTGTCATGGTGAAAGGGAAG
GGCTATTTGATCGGCGGACGTGGCAATAAACCAGTTGACATCTTCGACCC
AGCCACCAGCACTTGGAACAAGGGGCCCGGTCCAGGCATACAGTTACACC
ACATGCAATGCGTTGCGTACGGTGACGAAGTATGGATTCCATCTGCATGG
ACCGGTGGCTTTCCCCGCGAGAAAAACGTCGACAAAATCTACATATACAA
CACCAGAACCAACTCGTGGTACACCAGACCGGGGCTGCCAGAGTACCGTC
GTCGTGGTGGAGGCGCCGCCGTGTTGTATGACATGAAAATCTATGTCATC
GGTGGCAATCGCGGCGGGCATGGACAGCATGCAACTTCGCTAGGTTGGGT
AGATTATTACGACATTCGCACCAGCAAATGGGTCACCAATTTGCAAGACC
TTCCAGATGCCCGCGACCATGTGGGCGGTGCGCTGGTGAACTGGAAGAAG
ATTTGCGTGGCCGGCGGAAGGGACGGAGGTGTGAAGGGCTTCTTCACCGC
CACGAAAAGCAAGACGTTTTGCTTCAACCTCAAGCAAGACGGCACTGGGT
GGTGGCAAGACATGAAAGCACCCATTCCTGCGGGACGGGGGGGCGCTTCT
TATGGTATGAATTGCGACGGACATTTGGTGATTGCCGGTGGTGAACGGAA
CGATGCTTTTGCACGGGTTGACATCTTCGATGGGGTGCAGTGGAGAACGA
CGGCTAATATGAAGCAAAAGAGACATGGGTCGGGGCTAGCGGTATCAAAC
TGTATGTGCGGAAAGATTTTCATTGCGTCGGGTAGTGGAGGTCGCGGCGG
AGGTCCGGAACTAAAGACGACTGAAGTATATCATCCAGATGGTAATACAA
ATCCTTGCGCGTTCTACTAA
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