Ggra8887.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8887.t1
Unique NameGgra8887.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length256
Homology
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BLAST of Ggra8887.t1 vs. uniprot
Match: A0A2V3J4I9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4I9_9FLOR)

HSP 1 Score: 117 bits (294), Expect = 1.750e-28
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = 0 
Query:    1 MSASPLPPLRLPPFPSLTSQVPLLAPSPAQQPHAPLPSVRSLYSSXXXXXXXXXXXXXXXXXSRHASKRD-DALIAQLRNYTPPVPLIRESSELLSHARSGAEPHHCKMCGSTFRRRDNLMSHIRAQHKGE 130
            MSASPLPP+RLPPF SLT+Q+PL  P    QP   LPSV+SLYS                  S H +  + DALI+ +RN+ P  P IR+S+EL++     + PH CKMC STFRRRDNLM+HIRAQHKGE
Sbjct:    1 MSASPLPPVRLPPFHSLTNQLPLTLPP--MQPSTRLPSVQSLYSEVHRSR------------SYHPTGNNHDALISHIRNFAPQPPAIRDSTELVAQPGDVSRPHACKMCLSTFRRRDNLMAHIRAQHKGE 117
[Close]
BLAST of Ggra8887.t1 vs. uniprot
Match: A0A2V3IV83 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV83_9FLOR)

HSP 1 Score: 94.7 bits (234), Expect = 9.210e-20
Identity = 63/131 (48.09%), Postives = 75/131 (57.25%), Query Frame = 0 
Query:    1 MSASPLPPLRLPPFPSLTSQVPLLAPSPAQQPHAPLPSVRSLYSSXXXXXXXXXXXXXXXXXSRH-ASKRDDALIAQLRNYTPPVPLIRESSELLSHARSGAEPHHCKMCGSTFRRRDNLMSHIRAQHKGE 130
            MSAS LPP+ LPPFPSL +QV   +  P  Q    LPSV SL S                  S H  +K DD LI+ +R      P IR  +EL++ A   + PH CKMC STFRRRDNLM+HIRAQHKG+
Sbjct:    1 MSASSLPPINLPPFPSLINQV--RSTLPPVQHSTRLPSVHSLNSDVQRPR------------SYHPTNKSDDPLISHIRILASQPPAIRACTELVAQASDLSRPHACKMCLSTFRRRDNLMAHIRAQHKGQ 117
The following BLAST results are available for this feature:
BLAST of Ggra8887.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J4I91.750e-2853.44Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IV839.210e-2048.09Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 104..127
e-value: 0.0042
score: 26.3
coord: 133..156
e-value: 0.013
score: 24.7
coord: 220..243
e-value: 0.69
score: 19.0
coord: 162..185
e-value: 0.0013
score: 28.0
coord: 191..214
e-value: 0.027
score: 23.6
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 191..214
e-value: 0.0063
score: 16.9
coord: 162..185
e-value: 0.004
score: 17.5
coord: 104..127
e-value: 7.8E-4
score: 19.8
coord: 133..156
e-value: 0.001
score: 19.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 222..243
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 135..156
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 164..185
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 193..214
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 106..127
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 191..219
score: 12.653067
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 220..248
score: 9.597952
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 133..161
score: 13.463608
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 162..190
score: 12.237406
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 104..132
score: 14.565113
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 158..187
e-value: 1.7E-7
score: 32.9
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 217..251
e-value: 1.5E-6
score: 29.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 189..216
e-value: 2.3E-6
score: 29.5
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 129..157
e-value: 3.2E-10
score: 41.6
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 95..128
e-value: 6.4E-8
score: 34.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..75
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR24404ZINC FINGER PROTEINcoord: 47..238
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 142..200
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 185..238
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 103..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:653210..653977 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8887.t1Ggra8887.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 653210..653977 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8887.t1 ID=Ggra8887.t1|Name=Ggra8887.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=256bp
MSASPLPPLRLPPFPSLTSQVPLLAPSPAQQPHAPLPSVRSLYSSSSSSS
SSSSSSSPPRASSRHASKRDDALIAQLRNYTPPVPLIRESSELLSHARSG
AEPHHCKMCGSTFRRRDNLMSHIRAQHKGERPFECNVCGYRFIKKDHAVK
HLRVVHLKERPHVCPHCSSRFGQRSDLNKHVRSVHLRIKPFACEHCGIKF
SHRGNQIRHQQVVHEKRKPFNCVVCRATFAEKSNLVKHCHAVHRDSSLVP
TARRH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf