Ggra6624.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6624.t1
Unique NameGgra6624.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length970
Homology
BLAST of Ggra6624.t1 vs. uniprot
Match: A0A2V3IR93 (Bromodomain and WD repeat-containing n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR93_9FLOR)

HSP 1 Score: 663 bits (1711), Expect = 5.720e-210
Identity = 422/757 (55.75%), Postives = 518/757 (68.43%), Query Frame = 0
Query:   17 QQPAVTFKSTSYARDHNCDALLRRAKEFRKNQEKEEKRLLREARNTRRRMIIERERIALEKADGPAGIPLRDFEAPDSEYEDSDEDFDGDAYLSGDSDSXXXXXXXXEXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERVKPQSRRAMRKRRESSLGGRKKFLRSPKDEDLMGSEKRDGFEVFSNVG---HTHDSNPKGDQGPVVDVTEEKPVGRPEFGEQPEVDEVLKNSPQSGDSHSLRGALS----NLSSAPVFIGASAQNRKRRMRICTGSTPSQARLEGSGEGHRLGAIDYAADSHTGALRQERNHVKGSQSVGSCYGRVNQTEAGSNVVSLVPLNPSFTSERVGMKGANEAVFKSIEDHQGDSASCFRPRPSIPHPDSRSRTSPHEQMQNRSFVDGSPHIDIK-------NSEVRNASKPDGNDKSIQSDFPVRLTRRQRRERTRKGVSNDDPIEKFNHVVDIDEVAQRELEILEAQRNDRYHKKRRRRQSSENGDERFSSGDPEKRYNKRIDPRRVSGLRMRP-RRNSKSEDLMLSKERVAGAPENDIKSLEASTWLRSTSTPYTYVPQLGDDVMYFPGGHITAMEVSKSSGLDPLLDKADFKRKGLEVLYGNLFSKDQLPLHFQVVDVQFDFPTLLAPKGRNVGSQRGGKRQPDGNVVKPKTKVILTLQLLSPPRRRSGQSTAFVLSYFPVDVPEYLVLTSRVNAALSRTWKPSDPFRILFLNEKRACQYYTGKV 758
            QQP++TFKS  YARD NC+ALL+RA+EFR+NQEKEE+RLLR+ARN RRRMI+ERER+ALEK D    +   DFE PDSE++DSDE    DA  S              X  XXXXXXXXXXXXXXXXXXXXXXXXX               E  + + RR +RKRR       K F  S  D D +  E+  G+E+ +N     H+   N +  +G    +++       E   +    E  KN+P + DS+SLR  +     ++  AP   GA++Q  KRRMRIC+G++ SQ          R   +  AADSH G +   R+HV+G+QS+GSCYGRVN TEAG N+VS  PLNPSFTSER+ ++   E  FK +EDH+GDSASCFRP P +P  D+RSRTSP EQM N+S+++ SP  D+K       N     ++K DG ++S  SD P R+ R + R RTR GV  +   +K  H++DIDEVA++EL+ILEAQRN R          +E GDE  SS +P+KR  KR DPRR S LRMRP RRNSKSED++LS+ER AGA  ND++ LEASTWLRSTSTPYTYVPQ+GDDV YFPGGH+TAMEVS+SSGLDPLLDK+++KR GLEVL G  F+KDQ PL FQVV++ +DFP+LL+ KGRN+GS++ GKR  D   VKPKTKVILTL LLS  RRRSGQS AFVLSYFPVDVPEYLVLTSRV+AAL RTWKP DPFRILFLNEKRA QYYTG+V
Sbjct:  736 QQPSMTFKSVEYARDPNCEALLKRAQEFRENQEKEERRLLRDARNARRRMIMERERVALEKEDCLLYL-TGDFEVPDSEFDDSDEXXXXDALTSD------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKKPEGKTVGNVLDEPSQTRPRRELRKRRRFQRSA-KNFADSG-DSDELRREESPGYEIRTNESDSDHSEGHNERRAKGTDEQISKPDRTSAQEVPTRMRELEEDKNAPSNHDSNSLRAVIGPSSQDMRDAPRLGGAASQG-KRRMRICSGNSASQIAATDPPVHPRKPHVVAAADSHPGTIDAVRSHVRGAQSIGSCYGRVNLTEAGGNIVSQAPLNPSFTSERIEVRRPTEGTFKPMEDHEGDSASCFRPHPVLPDVDARSRTSPREQMHNQSYIERSPGSDVKVDPLFGVNRPAPTSTKGDGPERSSLSDSPARIARCRWRARTRNGVKKEQTNDKLFHIIDIDEVAEKELQILEAQRNKRSRXXXXXXXXAE-GDEENSSSEPDKRL-KRSDPRRTSVLRMRPTRRNSKSEDVLLSRERAAGASINDVQGLEASTWLRSTSTPYTYVPQVGDDVTYFPGGHVTAMEVSRSSGLDPLLDKSNYKRNGLEVLDGTSFNKDQSPLRFQVVELHYDFPSLLSSKGRNLGSKKNGKRPLDEMKVKPKTKVILTLSLLSNIRRRSGQSNAFVLSYFPVDVPEYLVLTSRVDAALHRTWKPFDPFRILFLNEKRAWQYYTGRV 1474          
BLAST of Ggra6624.t1 vs. uniprot
Match: R7QM61 (Bromo domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM61_CHOCR)

HSP 1 Score: 310 bits (794), Expect = 1.280e-84
Identity = 279/764 (36.52%), Postives = 381/764 (49.87%), Query Frame = 0
Query:   25 STSYARDHNCDALLRRAKEFRKNQEKEEKRLLREARNTRRRMIIERERIALEKADGPAGIPLRDFEAPDSEYEDSDEDFDGDAYLSGDSDSXXXXXXXXEXDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERVKPQSRRAMRKRRESSLGGRKKFLRSPKDEDLMGSEKRD--GFEVFSNVGHTHDSNPKGDQGPVVDVTEEKPVGRPEFGEQPEVDEVLKNSPQSGDSHSLRGALSNLSSA-PVFIGASAQNRKRRMRIC------TGSTPSQ-ARLEGSGEGHRLGAIDYAADSHTGALRQERNHVKGSQSVGSCYGRVNQTEAGSNVVSLVPLNPSFTSERVGMKGANEAV---FKSIEDHQGDSASCFRPR---PSIPHPDSRSRTSPHEQMQN-------RSFVDGSPHIDIKNSEVRNASKPDGNDKSIQSDFPVRLTRRQ--RRERTRKGVSNDDPIEKFNHVVDIDEVAQRELEILEAQRNDRYHKKRRRRQSSENGD-ERFSSGDPEKRYNKRIDPRRVS--GLRMRPRRNSKSEDLMLSKERVAGAPENDIKSLEASTWLRSTSTPYTYVPQLGDDVMYFPGGHITAMEVSKSSGLDPLLDKADFKRKGLEVLYGNLFSKDQLPLHFQVVDVQFDFPTLL-APKGRNVGSQRGGKRQPD-GNVVKPKTKVILTLQLLSPPRRRSGQSTAFVLSYFPVDVPEYLVLTSRVNAALSRTWKPSDPFRILFLNEKRACQYYTGKV 758
            S +   + N DAL+ RAKEFR NQEKEE+RLLREAR  RRRMI+E+ + ALE+   P+   LRDFE  DS      EDFDG          XXXXXXXX   +                                         RV P     ++KRR  +   R +   S +  +  G    D  G+E+ S    + +S    D+     V      G        E+    +  P      S R      S+A PV  GAS  +  RRMRI        GS P++ A + G  E       +    +   AL QE      + SV S  GR   +E G  +    P N SFTSERV  K ++  +    K++ED+QGD+AS  RPR   P +    S  R     + +N       R  V+GS   +  N +  +  + DG++KS+ SD P R  R++  RR RTRK + N  P      V DIDEVA RE+ +L+A+   +  +KRRRR   +  D + FS  D  +R ++  D   +S    ++R R  + SE    S      +  +  ++L AS+WLRS+S  YTYVPQLGDDVMYFP GH +AM +S+ +G++P+   A  K+ G E+L G+ F  D  P+ FQ+VDV ++FP L  + K R+  S+    R     N V  KT ++LTL+L+S    R+G +  FVL Y+PVD PEYLVLT+RV AAL+R W  SD FRILFLNE RA QYYTG +
Sbjct:  681 SRNSVENRNRDALMLRAKEFRANQEKEERRLLREARQARRRMILEKAKAALERDTIPS-FQLRDFEVQDSXXXXXXEDFDGAMEQEASGXXXXXXXXXXXDKIRPDRPTRTSRRQTHSSSDIDDDRGRSRLGLQMPSDRRQLRMRVGPSR---IKKRRRMARNHRLRDRVSAEIGESEGDIGDDSPGYELESQDSDSENSGTSKDRMRGSGVDGNSSTGTLLNRHAAEIRAGSEIRPSVSPRLSSRTPTPVPSTALPVLAGASRSDGSRRMRISIGGNFSAGSPPARFASVTGDRELLPRAPAEVGHGASDVALLQENV----ANSVASYDGRGQASEVGDVIRGPTPRNASFTSERVEQKDSSNVIERSSKAVEDNQGDTASFVRPRRRGPGVEDGSSAWRRQRSLEQRNSSVNKVRRDSVNGSHFANTVN-DSSDVQRTDGHEKSLLSDSPARALRQRARRRGRTRK-LDNTLP------VYDIDEVADREVALLDAKGEQKTSRKRRRRSFDDMSDGDYFSDEDVRRRVSRGSDHDDISHRARKVRKRDTTVSERPSTSSAEKGRSVRSRTRTLSASSWLRSSSNRYTYVPQLGDDVMYFPEGHASAMAISRETGVEPVAGLAALKKAGKEILDGSSFPADASPVRFQIVDVSYEFPVLSNSQKPRSASSRPKASRGSHVHNRVTAKTTLVLTLRLVSGLPSRTGATDRFVLCYYPVDAPEYLVLTNRVEAALNRAWTASDRFRILFLNESRAWQYYTGTI 1428          
BLAST of Ggra6624.t1 vs. uniprot
Match: A0A2V3IQM9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQM9_9FLOR)

HSP 1 Score: 69.3 bits (168), Expect = 1.600e-9
Identity = 56/144 (38.89%), Postives = 81/144 (56.25%), Query Frame = 0
Query:  806 TPSIMQPSFLGRQPGSLPCSAGAAVVPRSQPISTPICFAAPFTPSIPYASSASALSSLEEDRVVHSEDSIQSDDCYERTVQRLKLCIPRSKPIPVPRALPRAP-RPLATTPPLPDARPIVSRFLRRKEARRRGES--TFVDPFV 946
            TP+   P+    QP        A  VPR+  +S P   +AP   +IP          ++    ++ +D +  ++ ++     L+L IP SKPIPVP+A PRA   P+ + PPLPDARPIV+ FLRR EAR+RGE+  +FV+P V
Sbjct:   27 TPACSFPTHASSQPSPPAPLCFAQTVPRAH-VSYPC--SAPTLATIPTTEPEEREEDVDN---LNQDDWLHPEEIHKPVCAALRLLIPPSKPIPVPKARPRARVTPVYSPPPLPDARPIVAHFLRR-EARKRGENVESFVEPDV 163          
BLAST of Ggra6624.t1 vs. uniprot
Match: M2XIK9 (Transducin family protein / WD-40 repeat family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XIK9_GALSU)

HSP 1 Score: 67.0 bits (162), Expect = 1.790e-7
Identity = 59/242 (24.38%), Postives = 106/242 (43.80%), Query Frame = 0
Query:  533 RIDPRRVSGLRMRPRRNSKSEDLMLSKERVAGAPENDIKSLEASTWLRSTS---TPYTYVPQLGDDVMYFPGGHITAMEVSKSSGLDPLLDKADFKRKGLEVLYGNLFSKDQLPLHFQVVDVQFDFPTLLAPKGRNVGSQRGGKRQPDGNVVKPKTKVILTLQLLSPPRRRSGQSTAFVLSY-FPVDVPEYLVLTSRVNAALSRTWKPSDPFRILFLNEKRACQYYTGKVDLFTEKNQRIPF 770
            R  P+  + L    R+N +++       R   +  +  + L  S WLR+ S   T Y YVPQ+ D++ YFP GH+   +  ++ G+         ++  +E++    F  ++ P   ++  V++            +  QR           KP T   L +   +P   +S +   F L Y F   VP+++VL SRV ++LSR W+  + FR +++       +Y G V   +    R P+
Sbjct:  818 RSQPKAATKLLRHKRKNGRNDVSNSKGVRWTQSKISIRRKLNKSEWLRALSNDFTIYEYVPQVDDEIYYFPKGHL---DFVRAEGIG--------QKNYVELV--EYFQDEKKPKKLKICSVEY------------IIVQRR----------KPYTAARLQV---TPLEGQSSEKVCFELDYMFSEQVPDFVVLASRVESSLSRHWRVGEHFRTVYIGRDGQKSFYYGTVRSVSRSMYREPW 1021          
The following BLAST results are available for this feature:
BLAST of Ggra6624.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IR935.720e-21055.75Bromodomain and WD repeat-containing n=1 Tax=Graci... [more]
R7QM611.280e-8436.52Bromo domain-containing protein n=1 Tax=Chondrus c... [more]
A0A2V3IQM91.600e-938.89Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
M2XIK91.790e-724.38Transducin family protein / WD-40 repeat family pr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 34..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 383..473
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 504..555
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 511..555
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..173
NoneNo IPR availablePANTHERPTHR16266WD REPEAT DOMAIN 9coord: 74..760

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000859_piloncontigtig00000859_pilon:90671..95487 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6624.t1Ggra6624.t1Gracilaria gracilis GNS1m malemRNAtig00000859_pilon 90671..95487 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6624.t1 ID=Ggra6624.t1|Name=Ggra6624.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=970bp
MIFPLGSVRDKVNNVVQQPAVTFKSTSYARDHNCDALLRRAKEFRKNQEK
EEKRLLREARNTRRRMIIERERIALEKADGPAGIPLRDFEAPDSEYEDSD
EDFDGDAYLSGDSDSSSSSDDDDEDDVEDDVDERMPEDDGNDEEHEIRPV
RRKMRRTSTNESRNESSERVKPQSRRAMRKRRESSLGGRKKFLRSPKDED
LMGSEKRDGFEVFSNVGHTHDSNPKGDQGPVVDVTEEKPVGRPEFGEQPE
VDEVLKNSPQSGDSHSLRGALSNLSSAPVFIGASAQNRKRRMRICTGSTP
SQARLEGSGEGHRLGAIDYAADSHTGALRQERNHVKGSQSVGSCYGRVNQ
TEAGSNVVSLVPLNPSFTSERVGMKGANEAVFKSIEDHQGDSASCFRPRP
SIPHPDSRSRTSPHEQMQNRSFVDGSPHIDIKNSEVRNASKPDGNDKSIQ
SDFPVRLTRRQRRERTRKGVSNDDPIEKFNHVVDIDEVAQRELEILEAQR
NDRYHKKRRRRQSSENGDERFSSGDPEKRYNKRIDPRRVSGLRMRPRRNS
KSEDLMLSKERVAGAPENDIKSLEASTWLRSTSTPYTYVPQLGDDVMYFP
GGHITAMEVSKSSGLDPLLDKADFKRKGLEVLYGNLFSKDQLPLHFQVVD
VQFDFPTLLAPKGRNVGSQRGGKRQPDGNVVKPKTKVILTLQLLSPPRRR
SGQSTAFVLSYFPVDVPEYLVLTSRVNAALSRTWKPSDPFRILFLNEKRA
CQYYTGKVDLFTEKNQRIPFLVALRDPIPLSLEAAASLTASSSCSPPLLI
PPSHPTPSIMQPSFLGRQPGSLPCSAGAAVVPRSQPISTPICFAAPFTPS
IPYASSASALSSLEEDRVVHSEDSIQSDDCYERTVQRLKLCIPRSKPIPV
PRALPRAPRPLATTPPLPDARPIVSRFLRRKEARRRGESTFVDPFVERVG
ARCRFYGHVQYNRDRPDRS*
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