Ggra10220.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10220.t1
Unique Name	Ggra10220.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:127309..128235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705377.1
PFAMs	Hydrolase_4
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00020,RC00041
KEGG ko	ko:K01054
KEGG Reaction	R01351
KEGG Pathway	ko00561,ko01100,ko04714,ko04723,ko04923,map00561,map01100,map04714,map04723,map04923
KEGG Module	M00098
Evalue	2.24e-57
EggNOG OGs	COG2267@1\|root,KOG1455@2759\|Eukaryota
EC	3.1.1.23
Description	acylglycerol lipase activity
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10220	Ggra10220	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 127309..128235 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10220.t1.start1	Ggra10220.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 127309..127311 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10220.t1.CDS1	Ggra10220.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 127309..128235 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10220.t1.exon1	Ggra10220.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 127309..128235 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10220.t1.stop1	Ggra10220.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 128233..128235 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10220.t1	Ggra10220.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 127309..128235 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:127309..128235+
coding sequence from alignment at tig00000016_pilon:127309..128235+

mRNA sequence

>Ggra10220.t1 ID=Ggra10220.t1|Name=Ggra10220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MTCKYSESSLPSSFESEQLKLFSWLPEQPWRAAVFLQHGFRSHAHFNFLR
NDNPSKRGLYGDGDSPNDTSLIRELNNRQLAVFAHDHVGHGRSTGVRAYF
PSFKTLVDDAIDHIKHVDAEHELTKRDIPIFLIGHSMGGTVSILAAREAP
TLIKGIALSSAATEPPANMFGLMGKINRALSGITSWLFPYLEVMKLPKSP
DAQLQAIFSADELNCNDQGIRARVGREFLDAYDDISKNAHTFNSPFLSVH
GENDTLVNPMAAKRFYDAAISEDKTLHTGTGRWHNIFTEDGKEEMWFLFA
NWVSERCK*

spliced messenger RNA

>Ggra10220.t1 ID=Ggra10220.t1|Name=Ggra10220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000016_pilon:127309..128235+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTGCAAGTATTCCGAATCGTCACTTCCTTCGTCTTTCGAGTCGGA
GCAGCTCAAGCTCTTTAGCTGGCTCCCGGAACAGCCATGGCGTGCTGCCG
TTTTTCTCCAACATGGGTTCCGTTCCCATGCGCATTTTAACTTCCTCCGT
AACGATAACCCCTCAAAACGAGGTCTTTATGGAGACGGAGACTCCCCCAA
CGATACATCGTTAATCAGAGAACTAAACAATCGTCAACTAGCTGTCTTTG
CCCATGACCATGTCGGACATGGGCGCTCAACAGGTGTTCGTGCCTACTTT
CCATCCTTCAAGACGCTGGTTGACGACGCTATCGATCACATAAAGCACGT
TGATGCCGAACACGAACTTACGAAGCGTGATATTCCGATTTTCCTCATCG
GTCATTCGATGGGTGGTACGGTCTCCATTCTTGCAGCCCGTGAAGCTCCG
ACATTGATAAAGGGCATTGCGCTATCGTCCGCGGCAACTGAACCACCCGC
AAACATGTTTGGCTTGATGGGGAAAATCAATCGCGCTCTGTCTGGTATAA
CCAGTTGGCTTTTCCCGTACCTCGAGGTGATGAAGCTTCCCAAGTCTCCT
GACGCTCAGCTACAAGCAATCTTTTCAGCTGACGAACTCAACTGCAATGA
TCAGGGCATTCGCGCTCGAGTGGGACGAGAGTTTTTGGATGCGTACGACG
ACATATCGAAGAATGCACACACGTTCAATTCTCCATTTTTGTCAGTTCAT
GGAGAGAACGATACCTTAGTGAACCCCATGGCTGCCAAGCGCTTCTACGA
CGCTGCTATCAGTGAAGACAAGACCCTTCATACCGGGACCGGAAGATGGC
ACAACATTTTCACTGAGGATGGCAAAGAGGAAATGTGGTTCTTGTTTGCC
AACTGGGTGAGCGAGAGGTGTAAGTAG

protein sequence of Ggra10220.t1

>Ggra10220.t1 ID=Ggra10220.t1|Name=Ggra10220.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MTCKYSESSLPSSFESEQLKLFSWLPEQPWRAAVFLQHGFRSHAHFNFLR
NDNPSKRGLYGDGDSPNDTSLIRELNNRQLAVFAHDHVGHGRSTGVRAYF
PSFKTLVDDAIDHIKHVDAEHELTKRDIPIFLIGHSMGGTVSILAAREAP
TLIKGIALSSAATEPPANMFGLMGKINRALSGITSWLFPYLEVMKLPKSP
DAQLQAIFSADELNCNDQGIRARVGREFLDAYDDISKNAHTFNSPFLSVH
GENDTLVNPMAAKRFYDAAISEDKTLHTGTGRWHNIFTEDGKEEMWFLFA
NWVSERCK*

mRNA from alignment at tig00000016_pilon:127309..128235+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10220.t1 ID=Ggra10220.t1|Name=Ggra10220.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000016_pilon:127309..128235+ (Gracilaria gracilis GNS1m male)
ATGACTTGCAAGTATTCCGAATCGTCACTTCCTTCGTCTTTCGAGTCGGA
GCAGCTCAAGCTCTTTAGCTGGCTCCCGGAACAGCCATGGCGTGCTGCCG
TTTTTCTCCAACATGGGTTCCGTTCCCATGCGCATTTTAACTTCCTCCGT
AACGATAACCCCTCAAAACGAGGTCTTTATGGAGACGGAGACTCCCCCAA
CGATACATCGTTAATCAGAGAACTAAACAATCGTCAACTAGCTGTCTTTG
CCCATGACCATGTCGGACATGGGCGCTCAACAGGTGTTCGTGCCTACTTT
CCATCCTTCAAGACGCTGGTTGACGACGCTATCGATCACATAAAGCACGT
TGATGCCGAACACGAACTTACGAAGCGTGATATTCCGATTTTCCTCATCG
GTCATTCGATGGGTGGTACGGTCTCCATTCTTGCAGCCCGTGAAGCTCCG
ACATTGATAAAGGGCATTGCGCTATCGTCCGCGGCAACTGAACCACCCGC
AAACATGTTTGGCTTGATGGGGAAAATCAATCGCGCTCTGTCTGGTATAA
CCAGTTGGCTTTTCCCGTACCTCGAGGTGATGAAGCTTCCCAAGTCTCCT
GACGCTCAGCTACAAGCAATCTTTTCAGCTGACGAACTCAACTGCAATGA
TCAGGGCATTCGCGCTCGAGTGGGACGAGAGTTTTTGGATGCGTACGACG
ACATATCGAAGAATGCACACACGTTCAATTCTCCATTTTTGTCAGTTCAT
GGAGAGAACGATACCTTAGTGAACCCCATGGCTGCCAAGCGCTTCTACGA
CGCTGCTATCAGTGAAGACAAGACCCTTCATACCGGGACCGGAAGATGGC
ACAACATTTTCACTGAGGATGGCAAAGAGGAAATGTGGTTCTTGTTTGCC
AACTGGGTGAGCGAGAGGTGTAAGTAG

Coding sequence (CDS) from alignment at tig00000016_pilon:127309..128235+

>Ggra10220.t1 ID=Ggra10220.t1|Name=Ggra10220.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000016_pilon:127309..128235+ (Gracilaria gracilis GNS1m male)
ATGACTTGCAAGTATTCCGAATCGTCACTTCCTTCGTCTTTCGAGTCGGA
GCAGCTCAAGCTCTTTAGCTGGCTCCCGGAACAGCCATGGCGTGCTGCCG
TTTTTCTCCAACATGGGTTCCGTTCCCATGCGCATTTTAACTTCCTCCGT
AACGATAACCCCTCAAAACGAGGTCTTTATGGAGACGGAGACTCCCCCAA
CGATACATCGTTAATCAGAGAACTAAACAATCGTCAACTAGCTGTCTTTG
CCCATGACCATGTCGGACATGGGCGCTCAACAGGTGTTCGTGCCTACTTT
CCATCCTTCAAGACGCTGGTTGACGACGCTATCGATCACATAAAGCACGT
TGATGCCGAACACGAACTTACGAAGCGTGATATTCCGATTTTCCTCATCG
GTCATTCGATGGGTGGTACGGTCTCCATTCTTGCAGCCCGTGAAGCTCCG
ACATTGATAAAGGGCATTGCGCTATCGTCCGCGGCAACTGAACCACCCGC
AAACATGTTTGGCTTGATGGGGAAAATCAATCGCGCTCTGTCTGGTATAA
CCAGTTGGCTTTTCCCGTACCTCGAGGTGATGAAGCTTCCCAAGTCTCCT
GACGCTCAGCTACAAGCAATCTTTTCAGCTGACGAACTCAACTGCAATGA
TCAGGGCATTCGCGCTCGAGTGGGACGAGAGTTTTTGGATGCGTACGACG
ACATATCGAAGAATGCACACACGTTCAATTCTCCATTTTTGTCAGTTCAT
GGAGAGAACGATACCTTAGTGAACCCCATGGCTGCCAAGCGCTTCTACGA
CGCTGCTATCAGTGAAGACAAGACCCTTCATACCGGGACCGGAAGATGGC
ACAACATTTTCACTGAGGATGGCAAAGAGGAAATGTGGTTCTTGTTTGCC
AACTGGGTGAGCGAGAGGTGTAAGTAG