Ggra3027.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3027.t1
Unique NameGgra3027.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length196
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:918940..919527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3027Ggra3027Gracilaria gracilis GNS1m malegenetig00000858_pilon 918940..919527 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3027.t1.start1Ggra3027.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 918940..918942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3027.t1.CDS1Ggra3027.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 918940..919527 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3027.t1.exon1Ggra3027.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 918940..919527 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3027.t1.stop1Ggra3027.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 919525..919527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3027.t1Ggra3027.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 918940..919527 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3027.t1 ID=Ggra3027.t1|Name=Ggra3027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=196bp
MTDQTQSWVSGTPPLPAKDLELRSLAPLAEHDLNNIALDGIPTDGCDPQV
LTQIDCTFPVDLNPIATYLAPSETEQQRSAQQTHSNAAKACMGLQLLVDT
KRNNRTALKSLCAFCGAGFEKVNGALQRTPQPNEDANTALFAKGRCILFG
DDNGGALPHRYSEWTDAPLRRIRYYLIEFAVNYRKSDGGDISPPL*
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spliced messenger RNA

>Ggra3027.t1 ID=Ggra3027.t1|Name=Ggra3027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000858_pilon:918940..919527+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGATCAAACGCAATCATGGGTATCAGGCACACCTCCGCTGCCTGC
AAAGGATCTAGAACTAAGATCACTCGCGCCCTTGGCAGAACATGATCTCA
ACAACATTGCACTTGATGGTATTCCCACTGACGGCTGCGATCCTCAGGTT
TTGACGCAAATCGACTGCACTTTCCCTGTCGATCTTAATCCTATCGCAAC
CTACCTTGCCCCGTCGGAAACCGAGCAGCAACGCTCTGCGCAACAGACAC
ACTCCAATGCCGCAAAGGCCTGCATGGGACTTCAACTTCTCGTTGATACA
AAGCGCAACAACCGCACCGCCCTAAAGTCTCTTTGCGCCTTCTGCGGCGC
AGGGTTCGAAAAGGTAAATGGGGCTCTCCAGAGGACACCACAACCAAACG
AAGACGCTAATACCGCACTATTTGCAAAAGGACGTTGCATTTTGTTTGGG
GACGACAACGGCGGAGCCTTGCCGCATAGGTACAGTGAATGGACTGATGC
ACCGTTACGCCGAATAAGGTATTACTTAATTGAGTTCGCTGTCAATTACC
GTAAGAGCGATGGTGGAGACATCTCCCCACCACTATGA
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protein sequence of Ggra3027.t1

>Ggra3027.t1 ID=Ggra3027.t1|Name=Ggra3027.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=196bp
MTDQTQSWVSGTPPLPAKDLELRSLAPLAEHDLNNIALDGIPTDGCDPQV
LTQIDCTFPVDLNPIATYLAPSETEQQRSAQQTHSNAAKACMGLQLLVDT
KRNNRTALKSLCAFCGAGFEKVNGALQRTPQPNEDANTALFAKGRCILFG
DDNGGALPHRYSEWTDAPLRRIRYYLIEFAVNYRKSDGGDISPPL*
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mRNA from alignment at tig00000858_pilon:918940..919527+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3027.t1 ID=Ggra3027.t1|Name=Ggra3027.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000858_pilon:918940..919527+ (Gracilaria gracilis GNS1m male)
ATGACCGATCAAACGCAATCATGGGTATCAGGCACACCTCCGCTGCCTGC
AAAGGATCTAGAACTAAGATCACTCGCGCCCTTGGCAGAACATGATCTCA
ACAACATTGCACTTGATGGTATTCCCACTGACGGCTGCGATCCTCAGGTT
TTGACGCAAATCGACTGCACTTTCCCTGTCGATCTTAATCCTATCGCAAC
CTACCTTGCCCCGTCGGAAACCGAGCAGCAACGCTCTGCGCAACAGACAC
ACTCCAATGCCGCAAAGGCCTGCATGGGACTTCAACTTCTCGTTGATACA
AAGCGCAACAACCGCACCGCCCTAAAGTCTCTTTGCGCCTTCTGCGGCGC
AGGGTTCGAAAAGGTAAATGGGGCTCTCCAGAGGACACCACAACCAAACG
AAGACGCTAATACCGCACTATTTGCAAAAGGACGTTGCATTTTGTTTGGG
GACGACAACGGCGGAGCCTTGCCGCATAGGTACAGTGAATGGACTGATGC
ACCGTTACGCCGAATAAGGTATTACTTAATTGAGTTCGCTGTCAATTACC
GTAAGAGCGATGGTGGAGACATCTCCCCACCACTATGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:918940..919527+

>Ggra3027.t1 ID=Ggra3027.t1|Name=Ggra3027.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=588bp|location=Sequence derived from alignment at tig00000858_pilon:918940..919527+ (Gracilaria gracilis GNS1m male)
ATGACCGATCAAACGCAATCATGGGTATCAGGCACACCTCCGCTGCCTGC
AAAGGATCTAGAACTAAGATCACTCGCGCCCTTGGCAGAACATGATCTCA
ACAACATTGCACTTGATGGTATTCCCACTGACGGCTGCGATCCTCAGGTT
TTGACGCAAATCGACTGCACTTTCCCTGTCGATCTTAATCCTATCGCAAC
CTACCTTGCCCCGTCGGAAACCGAGCAGCAACGCTCTGCGCAACAGACAC
ACTCCAATGCCGCAAAGGCCTGCATGGGACTTCAACTTCTCGTTGATACA
AAGCGCAACAACCGCACCGCCCTAAAGTCTCTTTGCGCCTTCTGCGGCGC
AGGGTTCGAAAAGGTAAATGGGGCTCTCCAGAGGACACCACAACCAAACG
AAGACGCTAATACCGCACTATTTGCAAAAGGACGTTGCATTTTGTTTGGG
GACGACAACGGCGGAGCCTTGCCGCATAGGTACAGTGAATGGACTGATGC
ACCGTTACGCCGAATAAGGTATTACTTAATTGAGTTCGCTGTCAATTACC
GTAAGAGCGATGGTGGAGACATCTCCCCACCACTATGA
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