Ggra2907.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2907.t1
Unique NameGgra2907.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:376170..377483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002679912.1
Preferred namePPP1R7
PFAMsLRR_4,LRR_6,LRR_8,LRR_9
Max annot lvl2759|Eukaryota
KEGG koko:K17550
GOsGO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0007059,GO:0007163,GO:0007275,GO:0007444,GO:0007552,GO:0007560,GO:0008150,GO:0008285,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0010921,GO:0016333,GO:0016334,GO:0016335,GO:0016336,GO:0019208,GO:0019220,GO:0019222,GO:0019888,GO:0030234,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0035239,GO:0035295,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0042127,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043666,GO:0044424,GO:0044464,GO:0045177,GO:0045937,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051336,GO:0060255,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0080090,GO:0098772
Evalue9.63e-06
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
COG categoryL
BRITEko00000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2907Ggra2907Gracilaria gracilis GNS1m malegenetig00000858_pilon 376170..377483 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2907.t1.stop1Ggra2907.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 376170..376172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2907.t1.CDS1Ggra2907.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 376170..377483 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2907.t1.exon1Ggra2907.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 376170..377483 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2907.t1.start1Ggra2907.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 377481..377483 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2907.t1Ggra2907.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 376170..377483 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2907.t1 ID=Ggra2907.t1|Name=Ggra2907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=438bp
MQKQKDNTVDENASPEGKGQHTENQSELDSLGHIRQGDNKVVKSVIVDTS
TPGKLELRSTEKSDISAKETGDSKSVPELRKDEPHAIVTDTQASLSTIKA
VDESYEEWIDRTNQPLHFIGNGYELTPTLTNLYLTNNRIAVIENLEHCVN
LRELVLRQNSIQKVEGLDNLTNLTELDLYMNQITEIPPEAFAANKKMQKL
DLSFNQLRDISNFPCGNLENLEELYLISNKIKTIRGFYGMPKLVMLELGD
NRIRTIENLEKMTSLQGLWLGRNKITQIENLDSLVNLKRLSLQSNRIEAI
QNLHHLKELEEVYLSHNGLTSMKGVKNLTNLRVLDLGSNFIEHIEEVEDL
RLLKEFWINGNKLDSFEELGLLKNCQELETVYLEFNPLASDPQYQRKALN
ILPSSLEQLDALMVSDVHRELAERESKSANSGPSPKT*
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spliced messenger RNA

>Ggra2907.t1 ID=Ggra2907.t1|Name=Ggra2907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000858_pilon:376170..377483- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGCAGAAAGATAATACTGTAGACGAAAACGCAAGTCCGGAAGG
AAAGGGGCAGCATACCGAGAATCAATCAGAGTTGGACAGTCTGGGACACA
TTCGGCAAGGCGATAACAAGGTAGTTAAGAGTGTAATTGTGGACACTTCC
ACTCCGGGCAAATTGGAGCTTCGTTCCACAGAGAAGTCTGATATTTCTGC
CAAAGAGACAGGTGATTCGAAGAGCGTACCCGAATTACGCAAAGATGAAC
CTCACGCGATTGTCACCGACACTCAGGCCTCGTTATCAACGATCAAAGCT
GTAGATGAATCATATGAAGAGTGGATTGACCGAACTAATCAACCGCTTCA
CTTCATTGGAAATGGATATGAGCTGACTCCAACTCTCACAAACCTCTACC
TAACGAACAATCGAATAGCCGTCATCGAGAATTTAGAGCATTGCGTCAAT
CTCCGGGAGCTGGTGCTTCGACAAAATAGCATTCAAAAAGTTGAAGGTCT
GGATAATCTAACGAACTTAACTGAATTAGATCTTTACATGAATCAAATCA
CTGAAATTCCTCCAGAGGCCTTCGCGGCGAATAAGAAGATGCAAAAACTT
GACCTCAGTTTCAACCAGCTCCGTGATATCAGCAATTTTCCATGCGGGAA
TCTCGAAAACCTTGAAGAGTTGTATTTAATCAGCAATAAGATCAAGACTA
TCCGCGGTTTTTATGGTATGCCTAAGCTTGTCATGTTGGAACTTGGGGAT
AACCGAATTCGGACCATCGAAAACCTGGAGAAAATGACATCTCTCCAAGG
TCTATGGCTGGGGCGGAACAAGATTACGCAGATCGAAAACCTCGATTCGC
TTGTGAATTTGAAAAGGCTTAGTCTCCAAAGCAACCGAATTGAAGCTATT
CAGAACCTGCACCATCTCAAGGAGTTGGAAGAGGTTTACTTGAGTCATAA
TGGGCTCACATCAATGAAGGGCGTAAAGAATCTGACAAACTTGCGCGTAC
TTGATCTTGGAAGCAACTTCATTGAGCACATTGAAGAGGTTGAGGATCTC
AGACTTCTCAAAGAGTTCTGGATAAATGGGAACAAACTCGACAGTTTTGA
AGAGCTAGGATTGCTTAAGAACTGTCAAGAGCTTGAGACAGTATATCTCG
AATTCAATCCTCTCGCAAGCGACCCACAGTATCAACGAAAAGCTCTCAAC
ATTCTTCCAAGTTCATTAGAACAGCTCGATGCCCTTATGGTCTCTGATGT
GCACAGGGAACTTGCTGAGCGAGAAAGTAAATCAGCGAATTCTGGTCCTT
CTCCCAAGACTTGA
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protein sequence of Ggra2907.t1

>Ggra2907.t1 ID=Ggra2907.t1|Name=Ggra2907.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=438bp
MQKQKDNTVDENASPEGKGQHTENQSELDSLGHIRQGDNKVVKSVIVDTS
TPGKLELRSTEKSDISAKETGDSKSVPELRKDEPHAIVTDTQASLSTIKA
VDESYEEWIDRTNQPLHFIGNGYELTPTLTNLYLTNNRIAVIENLEHCVN
LRELVLRQNSIQKVEGLDNLTNLTELDLYMNQITEIPPEAFAANKKMQKL
DLSFNQLRDISNFPCGNLENLEELYLISNKIKTIRGFYGMPKLVMLELGD
NRIRTIENLEKMTSLQGLWLGRNKITQIENLDSLVNLKRLSLQSNRIEAI
QNLHHLKELEEVYLSHNGLTSMKGVKNLTNLRVLDLGSNFIEHIEEVEDL
RLLKEFWINGNKLDSFEELGLLKNCQELETVYLEFNPLASDPQYQRKALN
ILPSSLEQLDALMVSDVHRELAERESKSANSGPSPKT*
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mRNA from alignment at tig00000858_pilon:376170..377483-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2907.t1 ID=Ggra2907.t1|Name=Ggra2907.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00000858_pilon:376170..377483- (Gracilaria gracilis GNS1m male)
ATGCAGAAGCAGAAAGATAATACTGTAGACGAAAACGCAAGTCCGGAAGG
AAAGGGGCAGCATACCGAGAATCAATCAGAGTTGGACAGTCTGGGACACA
TTCGGCAAGGCGATAACAAGGTAGTTAAGAGTGTAATTGTGGACACTTCC
ACTCCGGGCAAATTGGAGCTTCGTTCCACAGAGAAGTCTGATATTTCTGC
CAAAGAGACAGGTGATTCGAAGAGCGTACCCGAATTACGCAAAGATGAAC
CTCACGCGATTGTCACCGACACTCAGGCCTCGTTATCAACGATCAAAGCT
GTAGATGAATCATATGAAGAGTGGATTGACCGAACTAATCAACCGCTTCA
CTTCATTGGAAATGGATATGAGCTGACTCCAACTCTCACAAACCTCTACC
TAACGAACAATCGAATAGCCGTCATCGAGAATTTAGAGCATTGCGTCAAT
CTCCGGGAGCTGGTGCTTCGACAAAATAGCATTCAAAAAGTTGAAGGTCT
GGATAATCTAACGAACTTAACTGAATTAGATCTTTACATGAATCAAATCA
CTGAAATTCCTCCAGAGGCCTTCGCGGCGAATAAGAAGATGCAAAAACTT
GACCTCAGTTTCAACCAGCTCCGTGATATCAGCAATTTTCCATGCGGGAA
TCTCGAAAACCTTGAAGAGTTGTATTTAATCAGCAATAAGATCAAGACTA
TCCGCGGTTTTTATGGTATGCCTAAGCTTGTCATGTTGGAACTTGGGGAT
AACCGAATTCGGACCATCGAAAACCTGGAGAAAATGACATCTCTCCAAGG
TCTATGGCTGGGGCGGAACAAGATTACGCAGATCGAAAACCTCGATTCGC
TTGTGAATTTGAAAAGGCTTAGTCTCCAAAGCAACCGAATTGAAGCTATT
CAGAACCTGCACCATCTCAAGGAGTTGGAAGAGGTTTACTTGAGTCATAA
TGGGCTCACATCAATGAAGGGCGTAAAGAATCTGACAAACTTGCGCGTAC
TTGATCTTGGAAGCAACTTCATTGAGCACATTGAAGAGGTTGAGGATCTC
AGACTTCTCAAAGAGTTCTGGATAAATGGGAACAAACTCGACAGTTTTGA
AGAGCTAGGATTGCTTAAGAACTGTCAAGAGCTTGAGACAGTATATCTCG
AATTCAATCCTCTCGCAAGCGACCCACAGTATCAACGAAAAGCTCTCAAC
ATTCTTCCAAGTTCATTAGAACAGCTCGATGCCCTTATGGTCTCTGATGT
GCACAGGGAACTTGCTGAGCGAGAAAGTAAATCAGCGAATTCTGGTCCTT
CTCCCAAGACTTGA
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Coding sequence (CDS) from alignment at tig00000858_pilon:376170..377483-

>Ggra2907.t1 ID=Ggra2907.t1|Name=Ggra2907.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00000858_pilon:376170..377483- (Gracilaria gracilis GNS1m male)
ATGCAGAAGCAGAAAGATAATACTGTAGACGAAAACGCAAGTCCGGAAGG
AAAGGGGCAGCATACCGAGAATCAATCAGAGTTGGACAGTCTGGGACACA
TTCGGCAAGGCGATAACAAGGTAGTTAAGAGTGTAATTGTGGACACTTCC
ACTCCGGGCAAATTGGAGCTTCGTTCCACAGAGAAGTCTGATATTTCTGC
CAAAGAGACAGGTGATTCGAAGAGCGTACCCGAATTACGCAAAGATGAAC
CTCACGCGATTGTCACCGACACTCAGGCCTCGTTATCAACGATCAAAGCT
GTAGATGAATCATATGAAGAGTGGATTGACCGAACTAATCAACCGCTTCA
CTTCATTGGAAATGGATATGAGCTGACTCCAACTCTCACAAACCTCTACC
TAACGAACAATCGAATAGCCGTCATCGAGAATTTAGAGCATTGCGTCAAT
CTCCGGGAGCTGGTGCTTCGACAAAATAGCATTCAAAAAGTTGAAGGTCT
GGATAATCTAACGAACTTAACTGAATTAGATCTTTACATGAATCAAATCA
CTGAAATTCCTCCAGAGGCCTTCGCGGCGAATAAGAAGATGCAAAAACTT
GACCTCAGTTTCAACCAGCTCCGTGATATCAGCAATTTTCCATGCGGGAA
TCTCGAAAACCTTGAAGAGTTGTATTTAATCAGCAATAAGATCAAGACTA
TCCGCGGTTTTTATGGTATGCCTAAGCTTGTCATGTTGGAACTTGGGGAT
AACCGAATTCGGACCATCGAAAACCTGGAGAAAATGACATCTCTCCAAGG
TCTATGGCTGGGGCGGAACAAGATTACGCAGATCGAAAACCTCGATTCGC
TTGTGAATTTGAAAAGGCTTAGTCTCCAAAGCAACCGAATTGAAGCTATT
CAGAACCTGCACCATCTCAAGGAGTTGGAAGAGGTTTACTTGAGTCATAA
TGGGCTCACATCAATGAAGGGCGTAAAGAATCTGACAAACTTGCGCGTAC
TTGATCTTGGAAGCAACTTCATTGAGCACATTGAAGAGGTTGAGGATCTC
AGACTTCTCAAAGAGTTCTGGATAAATGGGAACAAACTCGACAGTTTTGA
AGAGCTAGGATTGCTTAAGAACTGTCAAGAGCTTGAGACAGTATATCTCG
AATTCAATCCTCTCGCAAGCGACCCACAGTATCAACGAAAAGCTCTCAAC
ATTCTTCCAAGTTCATTAGAACAGCTCGATGCCCTTATGGTCTCTGATGT
GCACAGGGAACTTGCTGAGCGAGAAAGTAAATCAGCGAATTCTGGTCCTT
CTCCCAAGACTTGA
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