Ggra3024.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3024.t1
Unique NameGgra3024.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000858_piloncontigtig00000858_pilon:886479..887966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog216596.RL3179
PFAMsCobW_C,cobW
Max annot lvl28211|Alphaproteobacteria
Evalue1.54e-195
EggNOG OGsCOG0523@1|root,COG0523@2|Bacteria,1MVZV@1224|Proteobacteria,2TS4B@28211|Alphaproteobacteria,4B8IC@82115|Rhizobiaceae
DescriptionG3E family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3024Ggra3024Gracilaria gracilis GNS1m malegenetig00000858_pilon 886479..887966 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3024.t1.stop1Ggra3024.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000858_pilon 886479..886481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3024.t1.CDS1Ggra3024.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000858_pilon 886479..887966 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3024.t1.exon1Ggra3024.t1.exon1Gracilaria gracilis GNS1m maleexontig00000858_pilon 886479..887966 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3024.t1.start1Ggra3024.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000858_pilon 887964..887966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3024.t1Ggra3024.t1Gracilaria gracilis GNS1m malepolypeptidetig00000858_pilon 886479..887966 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3024.t1 ID=Ggra3024.t1|Name=Ggra3024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=496bp
MARTGEPPVLSNSALHVGSRPAAPLPDFYSSKRLSAPVPLITMTKVVAAK
RLPVTVLSGFLGAGKTTLLNHVLNNREGMRVAVIVNDMSEVNIDANLVRE
GGANLSRTEEQLVEMTNGCICCTLRDDLLQGVKKLADEERFDHLLIESTG
ISEPLPVASTFEFRDEEGVSLQDVAALDSMITVVDSAGLLKNYSSSDFLR
DRGETAGEEDDRTIVDLLVDQIEFADTIVLNKVSSSSKADLDSARQIIRA
LNSDAIVYETDYSKLPLKSVLGTGRFDFQKARQHPLWYKELNGFKDHVPE
TLEYGIRSFVYKARQPFHPVKLNDFIDEPWPGVVRAKGYFWLATRTEVIG
ELSFAGSSLKLEKGGIWWAAAPQELFDEQMKDPAFEKQVKKNFDKVWGDR
MQELVFIGCDPMDEAKIRAKLDACLLKAKTFEPKVWSLMADPFEEWENDE
DDEEDDDEDDDEDDDEDDDEDDKENDDQMEVEGDGGKGDEEKMED*
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spliced messenger RNA

>Ggra3024.t1 ID=Ggra3024.t1|Name=Ggra3024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000858_pilon:886479..887966- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGCACCGGCGAACCACCTGTTCTCTCAAATTCGGCTCTTCACGT
CGGTTCCCGTCCCGCGGCACCGCTTCCGGACTTCTACTCTAGTAAACGTC
TGTCTGCTCCGGTGCCACTGATCACCATGACGAAGGTGGTCGCTGCCAAG
CGGCTCCCCGTGACCGTGCTGTCCGGCTTCCTGGGCGCCGGCAAGACAAC
ACTGCTCAACCATGTCCTCAACAACCGCGAGGGCATGCGCGTGGCCGTCA
TTGTCAACGACATGAGCGAGGTCAACATCGACGCCAATCTCGTCCGCGAG
GGCGGCGCCAACCTGTCGCGCACCGAGGAGCAGCTGGTCGAGATGACAAA
CGGCTGCATCTGCTGCACCCTGCGCGACGACCTGCTGCAAGGCGTGAAAA
AACTGGCCGACGAGGAACGTTTCGACCATTTGCTCATCGAGTCGACGGGC
ATCTCCGAGCCGCTGCCGGTGGCGTCGACGTTCGAGTTCCGCGACGAGGA
AGGCGTCAGCTTGCAAGATGTGGCGGCGCTCGACTCGATGATCACCGTGG
TCGACTCAGCCGGTCTGCTCAAAAACTACTCGTCCAGCGACTTTCTCCGC
GACCGCGGTGAGACGGCCGGCGAAGAGGACGATCGCACAATTGTGGATCT
GCTCGTCGACCAGATCGAATTCGCCGACACGATCGTGCTGAACAAAGTGT
CGTCATCGTCGAAGGCTGACCTCGACTCGGCGCGCCAGATCATCCGCGCG
CTCAACTCCGATGCCATCGTGTACGAGACGGATTATTCGAAGCTTCCTCT
CAAGTCGGTGCTGGGTACCGGGCGGTTCGACTTTCAAAAGGCGCGCCAAC
ACCCGTTGTGGTACAAGGAGCTCAATGGTTTCAAGGATCATGTGCCGGAG
ACACTCGAGTACGGTATCCGGTCGTTCGTGTACAAAGCGCGACAACCGTT
CCACCCGGTCAAGCTGAACGACTTTATCGACGAACCATGGCCGGGAGTAG
TACGCGCCAAGGGTTACTTCTGGCTGGCCACCCGCACGGAGGTGATCGGC
GAGTTGTCGTTTGCTGGATCATCGTTGAAGTTGGAGAAGGGGGGCATCTG
GTGGGCGGCCGCGCCGCAGGAGTTGTTCGATGAGCAGATGAAAGACCCAG
CGTTCGAGAAGCAGGTGAAAAAGAATTTCGACAAAGTGTGGGGTGACCGC
ATGCAGGAGCTAGTTTTCATCGGATGCGACCCGATGGACGAAGCGAAAAT
CCGTGCAAAGCTCGACGCGTGTCTGTTGAAAGCCAAGACGTTTGAGCCCA
AGGTATGGTCGTTGATGGCAGATCCCTTCGAGGAGTGGGAGAACGACGAA
GATGACGAAGAAGATGACGACGAAGATGACGACGAAGATGACGACGAGGA
TGACGACGAGGATGACAAGGAAAATGACGACCAAATGGAGGTTGAGGGCG
ATGGTGGGAAAGGTGATGAAGAGAAGATGGAAGACTAG
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protein sequence of Ggra3024.t1

>Ggra3024.t1 ID=Ggra3024.t1|Name=Ggra3024.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=496bp
MARTGEPPVLSNSALHVGSRPAAPLPDFYSSKRLSAPVPLITMTKVVAAK
RLPVTVLSGFLGAGKTTLLNHVLNNREGMRVAVIVNDMSEVNIDANLVRE
GGANLSRTEEQLVEMTNGCICCTLRDDLLQGVKKLADEERFDHLLIESTG
ISEPLPVASTFEFRDEEGVSLQDVAALDSMITVVDSAGLLKNYSSSDFLR
DRGETAGEEDDRTIVDLLVDQIEFADTIVLNKVSSSSKADLDSARQIIRA
LNSDAIVYETDYSKLPLKSVLGTGRFDFQKARQHPLWYKELNGFKDHVPE
TLEYGIRSFVYKARQPFHPVKLNDFIDEPWPGVVRAKGYFWLATRTEVIG
ELSFAGSSLKLEKGGIWWAAAPQELFDEQMKDPAFEKQVKKNFDKVWGDR
MQELVFIGCDPMDEAKIRAKLDACLLKAKTFEPKVWSLMADPFEEWENDE
DDEEDDDEDDDEDDDEDDDEDDKENDDQMEVEGDGGKGDEEKMED*
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mRNA from alignment at tig00000858_pilon:886479..887966-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3024.t1 ID=Ggra3024.t1|Name=Ggra3024.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000858_pilon:886479..887966- (Gracilaria gracilis GNS1m male)
ATGGCCCGCACCGGCGAACCACCTGTTCTCTCAAATTCGGCTCTTCACGT
CGGTTCCCGTCCCGCGGCACCGCTTCCGGACTTCTACTCTAGTAAACGTC
TGTCTGCTCCGGTGCCACTGATCACCATGACGAAGGTGGTCGCTGCCAAG
CGGCTCCCCGTGACCGTGCTGTCCGGCTTCCTGGGCGCCGGCAAGACAAC
ACTGCTCAACCATGTCCTCAACAACCGCGAGGGCATGCGCGTGGCCGTCA
TTGTCAACGACATGAGCGAGGTCAACATCGACGCCAATCTCGTCCGCGAG
GGCGGCGCCAACCTGTCGCGCACCGAGGAGCAGCTGGTCGAGATGACAAA
CGGCTGCATCTGCTGCACCCTGCGCGACGACCTGCTGCAAGGCGTGAAAA
AACTGGCCGACGAGGAACGTTTCGACCATTTGCTCATCGAGTCGACGGGC
ATCTCCGAGCCGCTGCCGGTGGCGTCGACGTTCGAGTTCCGCGACGAGGA
AGGCGTCAGCTTGCAAGATGTGGCGGCGCTCGACTCGATGATCACCGTGG
TCGACTCAGCCGGTCTGCTCAAAAACTACTCGTCCAGCGACTTTCTCCGC
GACCGCGGTGAGACGGCCGGCGAAGAGGACGATCGCACAATTGTGGATCT
GCTCGTCGACCAGATCGAATTCGCCGACACGATCGTGCTGAACAAAGTGT
CGTCATCGTCGAAGGCTGACCTCGACTCGGCGCGCCAGATCATCCGCGCG
CTCAACTCCGATGCCATCGTGTACGAGACGGATTATTCGAAGCTTCCTCT
CAAGTCGGTGCTGGGTACCGGGCGGTTCGACTTTCAAAAGGCGCGCCAAC
ACCCGTTGTGGTACAAGGAGCTCAATGGTTTCAAGGATCATGTGCCGGAG
ACACTCGAGTACGGTATCCGGTCGTTCGTGTACAAAGCGCGACAACCGTT
CCACCCGGTCAAGCTGAACGACTTTATCGACGAACCATGGCCGGGAGTAG
TACGCGCCAAGGGTTACTTCTGGCTGGCCACCCGCACGGAGGTGATCGGC
GAGTTGTCGTTTGCTGGATCATCGTTGAAGTTGGAGAAGGGGGGCATCTG
GTGGGCGGCCGCGCCGCAGGAGTTGTTCGATGAGCAGATGAAAGACCCAG
CGTTCGAGAAGCAGGTGAAAAAGAATTTCGACAAAGTGTGGGGTGACCGC
ATGCAGGAGCTAGTTTTCATCGGATGCGACCCGATGGACGAAGCGAAAAT
CCGTGCAAAGCTCGACGCGTGTCTGTTGAAAGCCAAGACGTTTGAGCCCA
AGGTATGGTCGTTGATGGCAGATCCCTTCGAGGAGTGGGAGAACGACGAA
GATGACGAAGAAGATGACGACGAAGATGACGACGAAGATGACGACGAGGA
TGACGACGAGGATGACAAGGAAAATGACGACCAAATGGAGGTTGAGGGCG
ATGGTGGGAAAGGTGATGAAGAGAAGATGGAAGACTAG
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Coding sequence (CDS) from alignment at tig00000858_pilon:886479..887966-

>Ggra3024.t1 ID=Ggra3024.t1|Name=Ggra3024.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00000858_pilon:886479..887966- (Gracilaria gracilis GNS1m male)
ATGGCCCGCACCGGCGAACCACCTGTTCTCTCAAATTCGGCTCTTCACGT
CGGTTCCCGTCCCGCGGCACCGCTTCCGGACTTCTACTCTAGTAAACGTC
TGTCTGCTCCGGTGCCACTGATCACCATGACGAAGGTGGTCGCTGCCAAG
CGGCTCCCCGTGACCGTGCTGTCCGGCTTCCTGGGCGCCGGCAAGACAAC
ACTGCTCAACCATGTCCTCAACAACCGCGAGGGCATGCGCGTGGCCGTCA
TTGTCAACGACATGAGCGAGGTCAACATCGACGCCAATCTCGTCCGCGAG
GGCGGCGCCAACCTGTCGCGCACCGAGGAGCAGCTGGTCGAGATGACAAA
CGGCTGCATCTGCTGCACCCTGCGCGACGACCTGCTGCAAGGCGTGAAAA
AACTGGCCGACGAGGAACGTTTCGACCATTTGCTCATCGAGTCGACGGGC
ATCTCCGAGCCGCTGCCGGTGGCGTCGACGTTCGAGTTCCGCGACGAGGA
AGGCGTCAGCTTGCAAGATGTGGCGGCGCTCGACTCGATGATCACCGTGG
TCGACTCAGCCGGTCTGCTCAAAAACTACTCGTCCAGCGACTTTCTCCGC
GACCGCGGTGAGACGGCCGGCGAAGAGGACGATCGCACAATTGTGGATCT
GCTCGTCGACCAGATCGAATTCGCCGACACGATCGTGCTGAACAAAGTGT
CGTCATCGTCGAAGGCTGACCTCGACTCGGCGCGCCAGATCATCCGCGCG
CTCAACTCCGATGCCATCGTGTACGAGACGGATTATTCGAAGCTTCCTCT
CAAGTCGGTGCTGGGTACCGGGCGGTTCGACTTTCAAAAGGCGCGCCAAC
ACCCGTTGTGGTACAAGGAGCTCAATGGTTTCAAGGATCATGTGCCGGAG
ACACTCGAGTACGGTATCCGGTCGTTCGTGTACAAAGCGCGACAACCGTT
CCACCCGGTCAAGCTGAACGACTTTATCGACGAACCATGGCCGGGAGTAG
TACGCGCCAAGGGTTACTTCTGGCTGGCCACCCGCACGGAGGTGATCGGC
GAGTTGTCGTTTGCTGGATCATCGTTGAAGTTGGAGAAGGGGGGCATCTG
GTGGGCGGCCGCGCCGCAGGAGTTGTTCGATGAGCAGATGAAAGACCCAG
CGTTCGAGAAGCAGGTGAAAAAGAATTTCGACAAAGTGTGGGGTGACCGC
ATGCAGGAGCTAGTTTTCATCGGATGCGACCCGATGGACGAAGCGAAAAT
CCGTGCAAAGCTCGACGCGTGTCTGTTGAAAGCCAAGACGTTTGAGCCCA
AGGTATGGTCGTTGATGGCAGATCCCTTCGAGGAGTGGGAGAACGACGAA
GATGACGAAGAAGATGACGACGAAGATGACGACGAAGATGACGACGAGGA
TGACGACGAGGATGACAAGGAAAATGACGACCAAATGGAGGTTGAGGGCG
ATGGTGGGAAAGGTGATGAAGAGAAGATGGAAGACTAG
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