Ggra10285.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10285.t1
Unique NameGgra10285.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:375744..376460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128421.JAGA01000003_gene2793
Preferred namegpt
PFAMsPribosyltran
Max annot lvl2|Bacteria
KEGG rclassRC00063,RC00122
KEGG koko:K00769,ko:K07101
KEGG ReactionR01229,R02142
KEGG Pathwayko00230,ko01100,ko01110,map00230,map01100,map01110
GOsGO:0000310,GO:0003674,GO:0003824,GO:0004422,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006166,GO:0006177,GO:0006188,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032261,GO:0032263,GO:0032264,GO:0032265,GO:0034404,GO:0034641,GO:0034654,GO:0042278,GO:0042451,GO:0042455,GO:0043094,GO:0043101,GO:0043173,GO:0043174,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046037,GO:0046040,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097292,GO:0097293,GO:1901068,GO:1901070,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue6.31e-42
EggNOG OGsCOG2236@1|root,COG2236@2|Bacteria
EC2.4.2.22
Descriptionxanthine phosphoribosyltransferase activity
COG categoryF
BiGG ReactioniSbBS512_1146.SbBS512_E0235
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10285Ggra10285Gracilaria gracilis GNS1m malegenetig00000016_pilon 375744..376460 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10285.t1.stop1Ggra10285.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 375744..375746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10285.t1.CDS1Ggra10285.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 375744..376460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10285.t1.exon1Ggra10285.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 375744..376460 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10285.t1.start1Ggra10285.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 376458..376460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10285.t1Ggra10285.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 375744..376460 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10285.t1 ID=Ggra10285.t1|Name=Ggra10285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=239bp
MQPCFAASLAASRCACGARAPRRLRAAPHGARAAARVRPPRAAIPSNGAI
SATPRRYEGVSWATVERMCKHIADQARGERFDAVLAVTRGGLVPAVLLCE
QFELRNILSATVMFYADNGEQFFGMTEPRFLAFPSVDALQARSVLIVDDV
WDSGRTAHAVRNRVLRAKPKLVKVAVLHYKPHNNLFPAVQPDFYSATTTD
WIVYPWEKASPKAPHVSFDPNQPTVSNESIDNSPSVNN*
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spliced messenger RNA

>Ggra10285.t1 ID=Ggra10285.t1|Name=Ggra10285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000016_pilon:375744..376460- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGTGCTTCGCCGCGTCGCTCGCCGCGTCGCGCTGCGCGTGCGG
CGCGCGCGCGCCGCGCCGCCTGCGCGCCGCGCCGCATGGCGCGCGCGCCG
CGGCCCGCGTGCGCCCGCCGCGCGCCGCCATCCCGTCAAACGGCGCCATT
TCCGCCACGCCGCGCCGCTACGAGGGCGTGAGCTGGGCCACTGTGGAGCG
CATGTGCAAGCACATTGCCGACCAGGCGCGCGGCGAGCGCTTTGACGCCG
TGCTCGCCGTCACCAGGGGCGGCTTGGTGCCGGCCGTGCTGCTGTGCGAG
CAGTTTGAGCTGCGCAACATCCTGTCCGCCACCGTCATGTTCTACGCCGA
TAACGGCGAGCAGTTCTTCGGCATGACCGAGCCGCGCTTCCTGGCCTTTC
CGTCCGTGGACGCGCTGCAGGCGCGCTCCGTGCTCATTGTGGACGACGTG
TGGGATAGCGGCCGTACCGCGCACGCTGTGCGCAATCGCGTCCTGCGCGC
AAAGCCCAAGCTGGTCAAGGTGGCCGTTTTGCACTACAAGCCGCATAATA
ACCTGTTCCCGGCCGTGCAGCCGGACTTTTATTCCGCCACCACCACCGAT
TGGATCGTGTACCCGTGGGAGAAGGCGAGCCCCAAAGCGCCCCACGTCAG
TTTTGACCCCAATCAACCCACCGTCTCAAACGAATCCATCGACAACTCGC
CATCGGTTAACAACTGA
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protein sequence of Ggra10285.t1

>Ggra10285.t1 ID=Ggra10285.t1|Name=Ggra10285.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=239bp
MQPCFAASLAASRCACGARAPRRLRAAPHGARAAARVRPPRAAIPSNGAI
SATPRRYEGVSWATVERMCKHIADQARGERFDAVLAVTRGGLVPAVLLCE
QFELRNILSATVMFYADNGEQFFGMTEPRFLAFPSVDALQARSVLIVDDV
WDSGRTAHAVRNRVLRAKPKLVKVAVLHYKPHNNLFPAVQPDFYSATTTD
WIVYPWEKASPKAPHVSFDPNQPTVSNESIDNSPSVNN*
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mRNA from alignment at tig00000016_pilon:375744..376460-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10285.t1 ID=Ggra10285.t1|Name=Ggra10285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00000016_pilon:375744..376460- (Gracilaria gracilis GNS1m male)
ATGCAGCCGTGCTTCGCCGCGTCGCTCGCCGCGTCGCGCTGCGCGTGCGG
CGCGCGCGCGCCGCGCCGCCTGCGCGCCGCGCCGCATGGCGCGCGCGCCG
CGGCCCGCGTGCGCCCGCCGCGCGCCGCCATCCCGTCAAACGGCGCCATT
TCCGCCACGCCGCGCCGCTACGAGGGCGTGAGCTGGGCCACTGTGGAGCG
CATGTGCAAGCACATTGCCGACCAGGCGCGCGGCGAGCGCTTTGACGCCG
TGCTCGCCGTCACCAGGGGCGGCTTGGTGCCGGCCGTGCTGCTGTGCGAG
CAGTTTGAGCTGCGCAACATCCTGTCCGCCACCGTCATGTTCTACGCCGA
TAACGGCGAGCAGTTCTTCGGCATGACCGAGCCGCGCTTCCTGGCCTTTC
CGTCCGTGGACGCGCTGCAGGCGCGCTCCGTGCTCATTGTGGACGACGTG
TGGGATAGCGGCCGTACCGCGCACGCTGTGCGCAATCGCGTCCTGCGCGC
AAAGCCCAAGCTGGTCAAGGTGGCCGTTTTGCACTACAAGCCGCATAATA
ACCTGTTCCCGGCCGTGCAGCCGGACTTTTATTCCGCCACCACCACCGAT
TGGATCGTGTACCCGTGGGAGAAGGCGAGCCCCAAAGCGCCCCACGTCAG
TTTTGACCCCAATCAACCCACCGTCTCAAACGAATCCATCGACAACTCGC
CATCGGTTAACAACTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:375744..376460-

>Ggra10285.t1 ID=Ggra10285.t1|Name=Ggra10285.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00000016_pilon:375744..376460- (Gracilaria gracilis GNS1m male)
ATGCAGCCGTGCTTCGCCGCGTCGCTCGCCGCGTCGCGCTGCGCGTGCGG
CGCGCGCGCGCCGCGCCGCCTGCGCGCCGCGCCGCATGGCGCGCGCGCCG
CGGCCCGCGTGCGCCCGCCGCGCGCCGCCATCCCGTCAAACGGCGCCATT
TCCGCCACGCCGCGCCGCTACGAGGGCGTGAGCTGGGCCACTGTGGAGCG
CATGTGCAAGCACATTGCCGACCAGGCGCGCGGCGAGCGCTTTGACGCCG
TGCTCGCCGTCACCAGGGGCGGCTTGGTGCCGGCCGTGCTGCTGTGCGAG
CAGTTTGAGCTGCGCAACATCCTGTCCGCCACCGTCATGTTCTACGCCGA
TAACGGCGAGCAGTTCTTCGGCATGACCGAGCCGCGCTTCCTGGCCTTTC
CGTCCGTGGACGCGCTGCAGGCGCGCTCCGTGCTCATTGTGGACGACGTG
TGGGATAGCGGCCGTACCGCGCACGCTGTGCGCAATCGCGTCCTGCGCGC
AAAGCCCAAGCTGGTCAAGGTGGCCGTTTTGCACTACAAGCCGCATAATA
ACCTGTTCCCGGCCGTGCAGCCGGACTTTTATTCCGCCACCACCACCGAT
TGGATCGTGTACCCGTGGGAGAAGGCGAGCCCCAAAGCGCCCCACGTCAG
TTTTGACCCCAATCAACCCACCGTCTCAAACGAATCCATCGACAACTCGC
CATCGGTTAACAACTGA
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