Ggra4142.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4142.t1
Unique NameGgra4142.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:321954..323027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000024813
Max annot lvl121069|Pythiales
Evalue3.91e-24
EggNOG OGs2CRG1@1|root,2R7YG@2759|Eukaryota,1MK2E@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4142Ggra4142Gracilaria gracilis GNS1m malegenetig00000853_pilon 321954..323027 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4142.t1.start1Ggra4142.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 321954..321956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4142.t1.CDS1Ggra4142.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 321954..323027 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4142.t1.exon1Ggra4142.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 321954..323027 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4142.t1.stop1Ggra4142.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 323025..323027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4142.t1Ggra4142.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 321954..323027 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4142.t1 ID=Ggra4142.t1|Name=Ggra4142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MERGLQHNEKAFFSMQDEGHVPLSEGTTIPIRMSPTPVAGSQEQRPPPET
IVLPMRNQEERPANQASEGALAVRSRGAEAQLRTPSAILTRQIHRPPITK
KRTPVKGKNIRSNAGNPGGRGSGSTEKKIDSLLDVLEKHLPVGRDEWEVV
QRVHQSRFPDLSRNTDSLKRKFSALHCKKVPTGDPHIPEDIKRAKHIREE
MSERVDWGDGEDVEEVVEECFETPEVCLDDTNDPDKGQNSDADMENGRSN
AETPVSRTPSRQPSRPPSVRGGPGFLPRPLISKRQSSPPDPGDDIMSIYK
MTLLDEQKRRAEGHQRRIQERKEERVRWEEERKRREEERADERERREEDH
RRQNRFM*
back to top

spliced messenger RNA

>Ggra4142.t1 ID=Ggra4142.t1|Name=Ggra4142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000853_pilon:321954..323027+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGTGGTCTTCAACACAATGAAAAGGCATTCTTCTCAATGCAGGA
TGAGGGGCACGTTCCCTTGTCGGAAGGAACGACTATCCCAATCCGAATGT
CGCCTACGCCCGTAGCGGGTAGTCAAGAGCAGCGACCGCCTCCGGAAACC
ATCGTCCTACCAATGAGAAACCAAGAGGAAAGGCCCGCAAATCAAGCGTC
AGAGGGAGCACTTGCGGTGAGAAGCAGAGGCGCGGAAGCGCAACTGCGCA
CGCCATCGGCCATCCTCACTCGCCAAATTCACCGCCCGCCGATTACAAAG
AAGAGAACACCTGTCAAAGGTAAAAACATCCGCAGCAATGCTGGAAACCC
GGGGGGACGAGGGAGCGGTTCTACCGAGAAGAAAATCGATTCCCTGCTGG
ACGTTTTGGAAAAGCACCTGCCGGTGGGAAGGGATGAGTGGGAGGTGGTG
CAAAGGGTACATCAATCTCGCTTTCCTGACTTGTCACGCAATACAGACTC
GCTAAAGAGAAAGTTTTCAGCTCTGCACTGCAAAAAAGTGCCGACCGGAG
ATCCGCACATTCCCGAAGACATAAAGAGGGCAAAACATATACGGGAGGAA
ATGTCAGAGAGGGTAGACTGGGGGGACGGTGAGGATGTTGAAGAAGTAGT
AGAAGAGTGTTTCGAGACGCCCGAGGTGTGTCTAGACGACACAAACGACC
CAGACAAAGGACAAAATTCGGACGCTGACATGGAAAACGGGCGCAGTAAC
GCAGAAACTCCGGTAAGCAGGACGCCAAGCAGACAGCCGAGTAGACCCCC
ATCAGTTAGAGGGGGCCCGGGATTTTTGCCACGGCCTTTAATAAGTAAGC
GCCAATCATCCCCGCCAGACCCGGGCGACGATATAATGTCAATCTATAAG
ATGACATTGCTCGATGAGCAGAAGCGGCGGGCAGAAGGGCACCAACGAAG
AATACAGGAACGCAAGGAGGAGCGGGTCCGGTGGGAAGAGGAACGGAAGC
GCCGTGAGGAGGAACGCGCCGATGAGCGCGAACGTCGTGAGGAGGACCAT
AGAAGGCAGAATAGGTTTATGTAG
back to top

protein sequence of Ggra4142.t1

>Ggra4142.t1 ID=Ggra4142.t1|Name=Ggra4142.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MERGLQHNEKAFFSMQDEGHVPLSEGTTIPIRMSPTPVAGSQEQRPPPET
IVLPMRNQEERPANQASEGALAVRSRGAEAQLRTPSAILTRQIHRPPITK
KRTPVKGKNIRSNAGNPGGRGSGSTEKKIDSLLDVLEKHLPVGRDEWEVV
QRVHQSRFPDLSRNTDSLKRKFSALHCKKVPTGDPHIPEDIKRAKHIREE
MSERVDWGDGEDVEEVVEECFETPEVCLDDTNDPDKGQNSDADMENGRSN
AETPVSRTPSRQPSRPPSVRGGPGFLPRPLISKRQSSPPDPGDDIMSIYK
MTLLDEQKRRAEGHQRRIQERKEERVRWEEERKRREEERADERERREEDH
RRQNRFM*
back to top

mRNA from alignment at tig00000853_pilon:321954..323027+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4142.t1 ID=Ggra4142.t1|Name=Ggra4142.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000853_pilon:321954..323027+ (Gracilaria gracilis GNS1m male)
ATGGAACGTGGTCTTCAACACAATGAAAAGGCATTCTTCTCAATGCAGGA
TGAGGGGCACGTTCCCTTGTCGGAAGGAACGACTATCCCAATCCGAATGT
CGCCTACGCCCGTAGCGGGTAGTCAAGAGCAGCGACCGCCTCCGGAAACC
ATCGTCCTACCAATGAGAAACCAAGAGGAAAGGCCCGCAAATCAAGCGTC
AGAGGGAGCACTTGCGGTGAGAAGCAGAGGCGCGGAAGCGCAACTGCGCA
CGCCATCGGCCATCCTCACTCGCCAAATTCACCGCCCGCCGATTACAAAG
AAGAGAACACCTGTCAAAGGTAAAAACATCCGCAGCAATGCTGGAAACCC
GGGGGGACGAGGGAGCGGTTCTACCGAGAAGAAAATCGATTCCCTGCTGG
ACGTTTTGGAAAAGCACCTGCCGGTGGGAAGGGATGAGTGGGAGGTGGTG
CAAAGGGTACATCAATCTCGCTTTCCTGACTTGTCACGCAATACAGACTC
GCTAAAGAGAAAGTTTTCAGCTCTGCACTGCAAAAAAGTGCCGACCGGAG
ATCCGCACATTCCCGAAGACATAAAGAGGGCAAAACATATACGGGAGGAA
ATGTCAGAGAGGGTAGACTGGGGGGACGGTGAGGATGTTGAAGAAGTAGT
AGAAGAGTGTTTCGAGACGCCCGAGGTGTGTCTAGACGACACAAACGACC
CAGACAAAGGACAAAATTCGGACGCTGACATGGAAAACGGGCGCAGTAAC
GCAGAAACTCCGGTAAGCAGGACGCCAAGCAGACAGCCGAGTAGACCCCC
ATCAGTTAGAGGGGGCCCGGGATTTTTGCCACGGCCTTTAATAAGTAAGC
GCCAATCATCCCCGCCAGACCCGGGCGACGATATAATGTCAATCTATAAG
ATGACATTGCTCGATGAGCAGAAGCGGCGGGCAGAAGGGCACCAACGAAG
AATACAGGAACGCAAGGAGGAGCGGGTCCGGTGGGAAGAGGAACGGAAGC
GCCGTGAGGAGGAACGCGCCGATGAGCGCGAACGTCGTGAGGAGGACCAT
AGAAGGCAGAATAGGTTTATGTAG
back to top

Coding sequence (CDS) from alignment at tig00000853_pilon:321954..323027+

>Ggra4142.t1 ID=Ggra4142.t1|Name=Ggra4142.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000853_pilon:321954..323027+ (Gracilaria gracilis GNS1m male)
ATGGAACGTGGTCTTCAACACAATGAAAAGGCATTCTTCTCAATGCAGGA
TGAGGGGCACGTTCCCTTGTCGGAAGGAACGACTATCCCAATCCGAATGT
CGCCTACGCCCGTAGCGGGTAGTCAAGAGCAGCGACCGCCTCCGGAAACC
ATCGTCCTACCAATGAGAAACCAAGAGGAAAGGCCCGCAAATCAAGCGTC
AGAGGGAGCACTTGCGGTGAGAAGCAGAGGCGCGGAAGCGCAACTGCGCA
CGCCATCGGCCATCCTCACTCGCCAAATTCACCGCCCGCCGATTACAAAG
AAGAGAACACCTGTCAAAGGTAAAAACATCCGCAGCAATGCTGGAAACCC
GGGGGGACGAGGGAGCGGTTCTACCGAGAAGAAAATCGATTCCCTGCTGG
ACGTTTTGGAAAAGCACCTGCCGGTGGGAAGGGATGAGTGGGAGGTGGTG
CAAAGGGTACATCAATCTCGCTTTCCTGACTTGTCACGCAATACAGACTC
GCTAAAGAGAAAGTTTTCAGCTCTGCACTGCAAAAAAGTGCCGACCGGAG
ATCCGCACATTCCCGAAGACATAAAGAGGGCAAAACATATACGGGAGGAA
ATGTCAGAGAGGGTAGACTGGGGGGACGGTGAGGATGTTGAAGAAGTAGT
AGAAGAGTGTTTCGAGACGCCCGAGGTGTGTCTAGACGACACAAACGACC
CAGACAAAGGACAAAATTCGGACGCTGACATGGAAAACGGGCGCAGTAAC
GCAGAAACTCCGGTAAGCAGGACGCCAAGCAGACAGCCGAGTAGACCCCC
ATCAGTTAGAGGGGGCCCGGGATTTTTGCCACGGCCTTTAATAAGTAAGC
GCCAATCATCCCCGCCAGACCCGGGCGACGATATAATGTCAATCTATAAG
ATGACATTGCTCGATGAGCAGAAGCGGCGGGCAGAAGGGCACCAACGAAG
AATACAGGAACGCAAGGAGGAGCGGGTCCGGTGGGAAGAGGAACGGAAGC
GCCGTGAGGAGGAACGCGCCGATGAGCGCGAACGTCGTGAGGAGGACCAT
AGAAGGCAGAATAGGTTTATGTAG
back to top