Ggra4071.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4071.t1
Unique Name	Ggra4071.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	527

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000853_pilon	contig	tig00000853_pilon:57825..59405 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28583.AMAG_19940T0
PFAMs	PhoD
Max annot lvl	2759\|Eukaryota
Evalue	1.58e-76
EggNOG OGs	2CN3Y@1\|root,2QTSS@2759\|Eukaryota
Description	PhoD-like phosphatase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4071	Ggra4071	Gracilaria gracilis GNS1m male	gene	tig00000853_pilon 57825..59405 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4071.t1.start1	Ggra4071.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000853_pilon 57825..57827 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4071.t1.CDS1	Ggra4071.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000853_pilon 57825..59405 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4071.t1.exon1	Ggra4071.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000853_pilon 57825..59405 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4071.t1.stop1	Ggra4071.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000853_pilon 59403..59405 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4071.t1	Ggra4071.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000853_pilon 57825..59405 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000853_pilon:57825..59405+
coding sequence from alignment at tig00000853_pilon:57825..59405+

mRNA sequence

>Ggra4071.t1 ID=Ggra4071.t1|Name=Ggra4071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=527bp
MLRIPSLFIPYVLIFFVIVSADPFVWIGAVTNTSFTIHMEVPNFNNTQIL
LSENPNLASLVSITPWDESNSLIDQFKSSSLRQYTFADLQPLTKYYVAIR
SLSSTSRIASVTTYPGPDSTRNMQFAFSSCQIKSSDDVAFQEIYSHFVRA
ESSSQPPTFFMVHMGDLHYADIAKNDISLYRNRFRQVVSEPNVHRVMSSM
PMAYMYDDHDYGVNNAGFSSPSRDAALRAYRKYVPSYSLPSENASYHAFS
VGRVRVIMTDLRALAMKEPNSTLATEQKQWLFSEFAAAANYSVLVWMSSK
PWITRSSRGDSWGGYATERRAVADELVRLNVTNLIMIAGDAHMLAADNGS
NSDYASNGGAGFPVLQAAPLAQLGTSKGGPYSAGCFAYRFVRNRQYGLLK
LSKLAEEGGPCMQFEGYKSGESEPKILLEKCGSFSGVSGSRGNESSCYLP
MFPVWVGVVVGLGVTGFFIICAVVIMLVLRKKKRRKSVSEEDVSGTSENE
KEGQRAKSTESKDGETEKERRSRANG*

spliced messenger RNA

>Ggra4071.t1 ID=Ggra4071.t1|Name=Ggra4071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00000853_pilon:57825..59405+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGCATACCTTCTCTTTTCATACCATATGTACTCATCTTCTTCGT
TATTGTTTCGGCAGACCCATTTGTATGGATTGGAGCCGTCACCAACACAT
CGTTTACTATTCATATGGAAGTTCCTAACTTTAATAACACACAAATTCTG
TTGTCTGAGAACCCAAATTTGGCCTCTCTTGTTTCAATAACACCATGGGA
CGAATCAAACTCACTCATCGACCAATTCAAGTCCTCAAGCTTGCGTCAAT
ATACTTTTGCTGATCTTCAACCTCTGACGAAGTATTATGTAGCCATTCGC
TCCCTGTCCTCCACAAGCCGTATAGCATCAGTTACAACATACCCAGGCCC
AGATTCCACCCGAAATATGCAATTTGCCTTTTCGTCATGCCAGATAAAGT
CGTCCGATGACGTTGCTTTCCAAGAAATATACTCTCACTTCGTGCGAGCC
GAATCATCTTCTCAACCCCCTACTTTCTTTATGGTACACATGGGCGACCT
TCATTATGCAGACATCGCCAAGAATGACATTTCACTTTATAGGAATCGTT
TCCGTCAAGTTGTGTCAGAACCCAATGTGCATCGCGTTATGAGCTCGATG
CCGATGGCATACATGTATGATGACCACGACTATGGCGTAAACAACGCCGG
ATTTTCATCCCCGTCACGCGACGCTGCTCTGCGAGCATATAGAAAATACG
TACCCTCATATTCGTTGCCCTCGGAAAATGCCTCGTACCATGCTTTCTCC
GTAGGTCGCGTGCGAGTAATAATGACAGATCTGAGAGCTCTCGCTATGAA
GGAACCAAACTCCACTCTTGCGACTGAGCAGAAACAATGGCTGTTTTCCG
AGTTTGCCGCTGCCGCTAACTACAGTGTACTTGTCTGGATGTCCTCCAAG
CCATGGATCACGAGGTCTTCGAGAGGAGATTCTTGGGGAGGATATGCTAC
GGAGAGACGTGCCGTGGCCGATGAACTCGTGCGTCTCAATGTAACCAATC
TCATCATGATCGCTGGAGATGCGCATATGCTGGCGGCTGATAATGGTTCG
AACAGTGATTACGCTTCAAACGGCGGTGCTGGCTTTCCCGTGCTCCAAGC
TGCTCCTTTGGCTCAACTTGGAACATCGAAAGGGGGTCCTTACTCTGCAG
GGTGCTTTGCATACAGATTTGTTCGCAATCGACAATACGGACTTCTGAAG
CTTTCGAAGCTGGCTGAAGAAGGGGGTCCATGTATGCAGTTTGAAGGGTA
CAAGAGCGGAGAAAGTGAACCTAAGATATTGTTAGAGAAGTGCGGAAGTT
TTAGCGGTGTCAGCGGATCGAGGGGCAACGAGAGTAGTTGTTACTTGCCA
ATGTTCCCCGTTTGGGTCGGTGTGGTTGTTGGCTTAGGAGTTACGGGCTT
CTTCATAATCTGCGCAGTGGTCATCATGCTGGTTCTACGGAAAAAAAAGC
GGAGAAAAAGCGTCTCagaagaagatgtgagtgggacaagcgagaatgag
aaggagGGCCAGAGAGCAAAAAGCACAGAGTCAAAAGATGGTGAGACTGA
GAAAGAAAGACGTTCGCGAGCTAATGGTTGA

protein sequence of Ggra4071.t1

>Ggra4071.t1 ID=Ggra4071.t1|Name=Ggra4071.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=527bp
MLRIPSLFIPYVLIFFVIVSADPFVWIGAVTNTSFTIHMEVPNFNNTQIL
LSENPNLASLVSITPWDESNSLIDQFKSSSLRQYTFADLQPLTKYYVAIR
SLSSTSRIASVTTYPGPDSTRNMQFAFSSCQIKSSDDVAFQEIYSHFVRA
ESSSQPPTFFMVHMGDLHYADIAKNDISLYRNRFRQVVSEPNVHRVMSSM
PMAYMYDDHDYGVNNAGFSSPSRDAALRAYRKYVPSYSLPSENASYHAFS
VGRVRVIMTDLRALAMKEPNSTLATEQKQWLFSEFAAAANYSVLVWMSSK
PWITRSSRGDSWGGYATERRAVADELVRLNVTNLIMIAGDAHMLAADNGS
NSDYASNGGAGFPVLQAAPLAQLGTSKGGPYSAGCFAYRFVRNRQYGLLK
LSKLAEEGGPCMQFEGYKSGESEPKILLEKCGSFSGVSGSRGNESSCYLP
MFPVWVGVVVGLGVTGFFIICAVVIMLVLRKKKRRKSVSEEDVSGTSENE
KEGQRAKSTESKDGETEKERRSRANG*

mRNA from alignment at tig00000853_pilon:57825..59405+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4071.t1 ID=Ggra4071.t1|Name=Ggra4071.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00000853_pilon:57825..59405+ (Gracilaria gracilis GNS1m male)
ATGCTACGCATACCTTCTCTTTTCATACCATATGTACTCATCTTCTTCGT
TATTGTTTCGGCAGACCCATTTGTATGGATTGGAGCCGTCACCAACACAT
CGTTTACTATTCATATGGAAGTTCCTAACTTTAATAACACACAAATTCTG
TTGTCTGAGAACCCAAATTTGGCCTCTCTTGTTTCAATAACACCATGGGA
CGAATCAAACTCACTCATCGACCAATTCAAGTCCTCAAGCTTGCGTCAAT
ATACTTTTGCTGATCTTCAACCTCTGACGAAGTATTATGTAGCCATTCGC
TCCCTGTCCTCCACAAGCCGTATAGCATCAGTTACAACATACCCAGGCCC
AGATTCCACCCGAAATATGCAATTTGCCTTTTCGTCATGCCAGATAAAGT
CGTCCGATGACGTTGCTTTCCAAGAAATATACTCTCACTTCGTGCGAGCC
GAATCATCTTCTCAACCCCCTACTTTCTTTATGGTACACATGGGCGACCT
TCATTATGCAGACATCGCCAAGAATGACATTTCACTTTATAGGAATCGTT
TCCGTCAAGTTGTGTCAGAACCCAATGTGCATCGCGTTATGAGCTCGATG
CCGATGGCATACATGTATGATGACCACGACTATGGCGTAAACAACGCCGG
ATTTTCATCCCCGTCACGCGACGCTGCTCTGCGAGCATATAGAAAATACG
TACCCTCATATTCGTTGCCCTCGGAAAATGCCTCGTACCATGCTTTCTCC
GTAGGTCGCGTGCGAGTAATAATGACAGATCTGAGAGCTCTCGCTATGAA
GGAACCAAACTCCACTCTTGCGACTGAGCAGAAACAATGGCTGTTTTCCG
AGTTTGCCGCTGCCGCTAACTACAGTGTACTTGTCTGGATGTCCTCCAAG
CCATGGATCACGAGGTCTTCGAGAGGAGATTCTTGGGGAGGATATGCTAC
GGAGAGACGTGCCGTGGCCGATGAACTCGTGCGTCTCAATGTAACCAATC
TCATCATGATCGCTGGAGATGCGCATATGCTGGCGGCTGATAATGGTTCG
AACAGTGATTACGCTTCAAACGGCGGTGCTGGCTTTCCCGTGCTCCAAGC
TGCTCCTTTGGCTCAACTTGGAACATCGAAAGGGGGTCCTTACTCTGCAG
GGTGCTTTGCATACAGATTTGTTCGCAATCGACAATACGGACTTCTGAAG
CTTTCGAAGCTGGCTGAAGAAGGGGGTCCATGTATGCAGTTTGAAGGGTA
CAAGAGCGGAGAAAGTGAACCTAAGATATTGTTAGAGAAGTGCGGAAGTT
TTAGCGGTGTCAGCGGATCGAGGGGCAACGAGAGTAGTTGTTACTTGCCA
ATGTTCCCCGTTTGGGTCGGTGTGGTTGTTGGCTTAGGAGTTACGGGCTT
CTTCATAATCTGCGCAGTGGTCATCATGCTGGTTCTACGGAAAAAAAAGC
GGAGAAAAAGCGTCTCagaagaagatgtgagtgggacaagcgagaatgag
aaggagGGCCAGAGAGCAAAAAGCACAGAGTCAAAAGATGGTGAGACTGA
GAAAGAAAGACGTTCGCGAGCTAATGGTTGA

Coding sequence (CDS) from alignment at tig00000853_pilon:57825..59405+

>Ggra4071.t1 ID=Ggra4071.t1|Name=Ggra4071.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1581bp|location=Sequence derived from alignment at tig00000853_pilon:57825..59405+ (Gracilaria gracilis GNS1m male)
ATGCTACGCATACCTTCTCTTTTCATACCATATGTACTCATCTTCTTCGT
TATTGTTTCGGCAGACCCATTTGTATGGATTGGAGCCGTCACCAACACAT
CGTTTACTATTCATATGGAAGTTCCTAACTTTAATAACACACAAATTCTG
TTGTCTGAGAACCCAAATTTGGCCTCTCTTGTTTCAATAACACCATGGGA
CGAATCAAACTCACTCATCGACCAATTCAAGTCCTCAAGCTTGCGTCAAT
ATACTTTTGCTGATCTTCAACCTCTGACGAAGTATTATGTAGCCATTCGC
TCCCTGTCCTCCACAAGCCGTATAGCATCAGTTACAACATACCCAGGCCC
AGATTCCACCCGAAATATGCAATTTGCCTTTTCGTCATGCCAGATAAAGT
CGTCCGATGACGTTGCTTTCCAAGAAATATACTCTCACTTCGTGCGAGCC
GAATCATCTTCTCAACCCCCTACTTTCTTTATGGTACACATGGGCGACCT
TCATTATGCAGACATCGCCAAGAATGACATTTCACTTTATAGGAATCGTT
TCCGTCAAGTTGTGTCAGAACCCAATGTGCATCGCGTTATGAGCTCGATG
CCGATGGCATACATGTATGATGACCACGACTATGGCGTAAACAACGCCGG
ATTTTCATCCCCGTCACGCGACGCTGCTCTGCGAGCATATAGAAAATACG
TACCCTCATATTCGTTGCCCTCGGAAAATGCCTCGTACCATGCTTTCTCC
GTAGGTCGCGTGCGAGTAATAATGACAGATCTGAGAGCTCTCGCTATGAA
GGAACCAAACTCCACTCTTGCGACTGAGCAGAAACAATGGCTGTTTTCCG
AGTTTGCCGCTGCCGCTAACTACAGTGTACTTGTCTGGATGTCCTCCAAG
CCATGGATCACGAGGTCTTCGAGAGGAGATTCTTGGGGAGGATATGCTAC
GGAGAGACGTGCCGTGGCCGATGAACTCGTGCGTCTCAATGTAACCAATC
TCATCATGATCGCTGGAGATGCGCATATGCTGGCGGCTGATAATGGTTCG
AACAGTGATTACGCTTCAAACGGCGGTGCTGGCTTTCCCGTGCTCCAAGC
TGCTCCTTTGGCTCAACTTGGAACATCGAAAGGGGGTCCTTACTCTGCAG
GGTGCTTTGCATACAGATTTGTTCGCAATCGACAATACGGACTTCTGAAG
CTTTCGAAGCTGGCTGAAGAAGGGGGTCCATGTATGCAGTTTGAAGGGTA
CAAGAGCGGAGAAAGTGAACCTAAGATATTGTTAGAGAAGTGCGGAAGTT
TTAGCGGTGTCAGCGGATCGAGGGGCAACGAGAGTAGTTGTTACTTGCCA
ATGTTCCCCGTTTGGGTCGGTGTGGTTGTTGGCTTAGGAGTTACGGGCTT
CTTCATAATCTGCGCAGTGGTCATCATGCTGGTTCTACGGAAAAAAAAGC
GGAGAAAAAGCGTCTCagaagaagatgtgagtgggacaagcgagaatgag
aaggagGGCCAGAGAGCAAAAAGCACAGAGTCAAAAGATGGTGAGACTGA
GAAAGAAAGACGTTCGCGAGCTAATGGTTGA