Ggra4115.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4115.t1
Unique Name	Ggra4115.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	794

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000853_pilon	contig	tig00000853_pilon:163953..166334 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4115	Ggra4115	Gracilaria gracilis GNS1m male	gene	tig00000853_pilon 163953..166334 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4115.t1.start1	Ggra4115.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000853_pilon 163953..163955 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4115.t1.CDS1	Ggra4115.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000853_pilon 163953..166334 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4115.t1.exon1	Ggra4115.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000853_pilon 163953..166334 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4115.t1.stop1	Ggra4115.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000853_pilon 166332..166334 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4115.t1	Ggra4115.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000853_pilon 163953..166334 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000853_pilon:163953..166334+
coding sequence from alignment at tig00000853_pilon:163953..166334+

mRNA sequence

>Ggra4115.t1 ID=Ggra4115.t1|Name=Ggra4115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=794bp
MGQRRKPLFRQTQLSFKKTDPNQSSPLPSQTPLKPLPRPTAPLVFRKSTP
KKKRRIDSCAFDDECWEMGQRLIDGEPLNPKEKIVEEGASVVNLDDSNSD
DDFEPPSVFSEVARQRPQLLTPTRMRNDRSSMTKSSANRGKKTKKPIRYT
TPSQKRDSAQAANAKQRSIPALESSSSEDEVDHVVFEGEKSELSDTDDDE
PVRASLRKGSKHGTSSRHFSPVVLHRREQHEDRRTVHERTNVLRAPKSPA
IKKTATSNRISSNSQQRINNFGKSERDALLQVSEKCSGSKQAPKRACDLP
QLFSDDSDDSIDIRIRRSSQRKRPRRKRRIQESSEEDSQQESEQVAVKQD
TPRPGVEVEYSRNVPEIEVLLASASENDNRHHQDYELRILDAEGGMERKD
SKRNHLDRDKSLKGHTSGHFPEEPGRSGKNSARSPLRSQTRRRLSFAGSQ
DTGITPPSSPSPPSTRKRRLRSKLFTIPSDEEDESQRGPPKCSEIPDRAQ
KPVECDRIPDETEWYHEREIDTFSSSGEDKNEPIQNSSPRKNVAVRSKKR
VSAAKPGTQADLLTKLSPSPKEPVFDVSQDFVDDVNFKKHDVDRANVPHR
TAHVRPPSNEVIDLVDDDDFEDIARRSTQKDNGLSSIEDVDGNDVEKLNE
LPSYDIDDSKPPPFNLYILCNDGESIVDMRDRLGENELMDKVMQARNAGR
EIIGGDKLGLAATFNKDIFSRFSKTVVGDQVSRQKRSASITEKALRGEYN
FNYRGRERDQMRRGNQSRKRGSTRTGRGKSYRSRLSNLGHRRR*

spliced messenger RNA

>Ggra4115.t1 ID=Ggra4115.t1|Name=Ggra4115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2382bp|location=Sequence derived from alignment at tig00000853_pilon:163953..166334+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCAGCGGAGAAAACCACTTTTTCGTCAGACCCAATTGAGCTTCAA
GAAAACTGACCCGAATCAGTCTTCACCGCTTCCCTCCCAAACACCGTTAA
AACCTCTTCCGCGACCGACAGCCCCGCTGGTATTCCGGAAATCCACCCCG
AAAAAGAAGCGTCGCATAGACAGTTGTGCATTTGATGACGAATGTTGGGA
AATGGGTCAACGTCTAATCGACGGCGAACCTCTAAATCCCAAAGAGAAAA
TTGTGGAAGAAGGCGCTTCGGTCGTAAATCTCGATGATTCGAATAGCGAT
GACGACTTCGAACCTCCAAGTGTGTTTTCGGAGGTGGCGCGCCAGCGACC
ACAATTGCTCACACCCACTCGAATGCGCAATGACCGCTCTTCGATGACTA
AGAGTTCGGCAAACAGAGGTAAAAAGACAAAGAAACCGATTCGCTATACT
ACCCCTTCCCAGAAGCGGGATTCGGCTCAAGCAGCAAACGCAAAACAGCG
CTCAATACCTGCCCTCGAATCGAGTTCTTCAGAAGACGAGGTCGACCATG
TCGTGTTTGAAGGTGAAAAAAGTGAACTCTCCGACACTGATGACGATGAA
CCGGTCCGCGCATCGCTTAGAAAGGGATCAAAACACGGGACGAGTTCAAG
ACACTTCTCTCCTGTTGTTCTCCATAGACGTGAGCAGCATGAGGATAGGA
GGACTGTACATGAAAGAACGAATGTGTTGAGGGCACCGAAATCGCCAGCT
ATCAAGAAAACTGCGACGTCAAATCGAATATCTTCCAATAGTCAACAACG
TATCAATAATTTTGGCAAATCCGAAAGAGATGCCCTTCTACAGGTCTCTG
AAAAGTGCTCAGGATCGAAACAGGCTCCTAAACGCGCTTGCGATTTACCT
CAGCTTTTCTCTGACGATAGCGATGATTCTATTGATATAAGAATTCGGAG
GAGCTCGCAGCGGAAAAGACCTCGCAGAAAGCGTCGTATCCAAGAATCTT
CCGAGGAAGATAGTCAACAAGAGAGCGAACAAGTGGCTGTGAAACAAGAT
ACACCTCGTCCAGGAGTAGAAGTGGAGTATAGTAGGAACGTTCCCGAAAT
AGAAGTACTTCTCGCCAGCGCATCAGAGAACGATAATCGACACCATCAGG
ATTATGAATTGCGTATCCTTGACGCTGAAGGAGGAATGGAAAGAAAAGAT
TCGAAGAGGAACCACTTGGATCGAGATAAATCACTAAAGGGACACACAAG
TGGGCATTTTCCCGAGGAACCGGGTCGTTCGGGCAAGAATTCCGCGAGGA
GTCCTCTAAGAAGCCAAACGAGAAGACGATTATCATTTGCAGGTTCACAG
GATACCGGGATAACTCCCCCTTCAAGTCCTTCACCACCCTCCACTAGGAA
GCGTAGACTACGCTCAAAGCTTTTTACCATTCCGAGTGATGAAGAAGATG
AATCCCAAAGAGGTCCACCCAAGTGTTCGGAAATACCAGACAGGGCGCAG
AAGCCTGTCGAGTGTGACAGAATTCCAGACGAAACTGAATGGTATCACGA
ACGCGAAATTGACACCTTCTCAAGCTCTGGGGAAGATAAGAATGAGCCCA
TACAAAATTCGAGCCCAAGAAAGAACGTTGCTGTTCGTTCAAAGAAGAGG
GTCTCCGCCGCAAAACCAGGTACACAAGCAGACCTTCTAACTAAACTATC
TCCGAGTCCAAAAGAACCAGTATTCGATGTATCCCAAGATTTCGTGGACG
ATGTTAACTTTAAAAAGCATGATGTTGATCGAGCGAATGTTCCTCATAGA
ACGGCCCACGTCCGTCCGCCCAGTAACGAAGTTATTGACTTGGTAGATGA
TGATGACTTTGAGGATATTGCTCGAAGGAGCACACAGAAAGATAATGGTT
TGTCATCTATTGAAGATGTGGATGGGAATGATGTAGAGAAACTAAACGAA
TTGCCGTCATATGACATAGACGATTCAAAACCGCCGCCCTTCAATCTGTA
TATTCTTTGCAACGATGGGGAATCCATTGTTGATATGAGAGACAGGCTCG
GAGAGAATGAGTTAATGGACAAAGTCATGCAAGCCCGCAATGCTGGTAGG
GAGATCATAGGAGGAGACAAACTTGGTCTAGCGGCGACTTTCAACAAAGA
TATTTTCTCTCGGTTTTCGAAAACTGTGGTTGGTGATCAAGTTTCTAGAC
AAAAGAGAAGCGCTTCTATAACGGAAAAGGCACTTCGAGGCGAATACAAC
TTCAACTACCGCGGGAGAGAGCGTGATCAAATGCGCAGGGGAAATCAGTC
TCGAAAAAGAGGGTCAACACGGACTGGAAGAGGCAAGAGCTATAGAAGCC
GATTGTCAAATTTAGGGCATCGTAGACGGTGA

protein sequence of Ggra4115.t1

>Ggra4115.t1 ID=Ggra4115.t1|Name=Ggra4115.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=794bp
MGQRRKPLFRQTQLSFKKTDPNQSSPLPSQTPLKPLPRPTAPLVFRKSTP
KKKRRIDSCAFDDECWEMGQRLIDGEPLNPKEKIVEEGASVVNLDDSNSD
DDFEPPSVFSEVARQRPQLLTPTRMRNDRSSMTKSSANRGKKTKKPIRYT
TPSQKRDSAQAANAKQRSIPALESSSSEDEVDHVVFEGEKSELSDTDDDE
PVRASLRKGSKHGTSSRHFSPVVLHRREQHEDRRTVHERTNVLRAPKSPA
IKKTATSNRISSNSQQRINNFGKSERDALLQVSEKCSGSKQAPKRACDLP
QLFSDDSDDSIDIRIRRSSQRKRPRRKRRIQESSEEDSQQESEQVAVKQD
TPRPGVEVEYSRNVPEIEVLLASASENDNRHHQDYELRILDAEGGMERKD
SKRNHLDRDKSLKGHTSGHFPEEPGRSGKNSARSPLRSQTRRRLSFAGSQ
DTGITPPSSPSPPSTRKRRLRSKLFTIPSDEEDESQRGPPKCSEIPDRAQ
KPVECDRIPDETEWYHEREIDTFSSSGEDKNEPIQNSSPRKNVAVRSKKR
VSAAKPGTQADLLTKLSPSPKEPVFDVSQDFVDDVNFKKHDVDRANVPHR
TAHVRPPSNEVIDLVDDDDFEDIARRSTQKDNGLSSIEDVDGNDVEKLNE
LPSYDIDDSKPPPFNLYILCNDGESIVDMRDRLGENELMDKVMQARNAGR
EIIGGDKLGLAATFNKDIFSRFSKTVVGDQVSRQKRSASITEKALRGEYN
FNYRGRERDQMRRGNQSRKRGSTRTGRGKSYRSRLSNLGHRRR*

mRNA from alignment at tig00000853_pilon:163953..166334+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4115.t1 ID=Ggra4115.t1|Name=Ggra4115.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2382bp|location=Sequence derived from alignment at tig00000853_pilon:163953..166334+ (Gracilaria gracilis GNS1m male)
ATGGGCCAGCGGAGAAAACCACTTTTTCGTCAGACCCAATTGAGCTTCAA
GAAAACTGACCCGAATCAGTCTTCACCGCTTCCCTCCCAAACACCGTTAA
AACCTCTTCCGCGACCGACAGCCCCGCTGGTATTCCGGAAATCCACCCCG
AAAAAGAAGCGTCGCATAGACAGTTGTGCATTTGATGACGAATGTTGGGA
AATGGGTCAACGTCTAATCGACGGCGAACCTCTAAATCCCAAAGAGAAAA
TTGTGGAAGAAGGCGCTTCGGTCGTAAATCTCGATGATTCGAATAGCGAT
GACGACTTCGAACCTCCAAGTGTGTTTTCGGAGGTGGCGCGCCAGCGACC
ACAATTGCTCACACCCACTCGAATGCGCAATGACCGCTCTTCGATGACTA
AGAGTTCGGCAAACAGAGGTAAAAAGACAAAGAAACCGATTCGCTATACT
ACCCCTTCCCAGAAGCGGGATTCGGCTCAAGCAGCAAACGCAAAACAGCG
CTCAATACCTGCCCTCGAATCGAGTTCTTCAGAAGACGAGGTCGACCATG
TCGTGTTTGAAGGTGAAAAAAGTGAACTCTCCGACACTGATGACGATGAA
CCGGTCCGCGCATCGCTTAGAAAGGGATCAAAACACGGGACGAGTTCAAG
ACACTTCTCTCCTGTTGTTCTCCATAGACGTGAGCAGCATGAGGATAGGA
GGACTGTACATGAAAGAACGAATGTGTTGAGGGCACCGAAATCGCCAGCT
ATCAAGAAAACTGCGACGTCAAATCGAATATCTTCCAATAGTCAACAACG
TATCAATAATTTTGGCAAATCCGAAAGAGATGCCCTTCTACAGGTCTCTG
AAAAGTGCTCAGGATCGAAACAGGCTCCTAAACGCGCTTGCGATTTACCT
CAGCTTTTCTCTGACGATAGCGATGATTCTATTGATATAAGAATTCGGAG
GAGCTCGCAGCGGAAAAGACCTCGCAGAAAGCGTCGTATCCAAGAATCTT
CCGAGGAAGATAGTCAACAAGAGAGCGAACAAGTGGCTGTGAAACAAGAT
ACACCTCGTCCAGGAGTAGAAGTGGAGTATAGTAGGAACGTTCCCGAAAT
AGAAGTACTTCTCGCCAGCGCATCAGAGAACGATAATCGACACCATCAGG
ATTATGAATTGCGTATCCTTGACGCTGAAGGAGGAATGGAAAGAAAAGAT
TCGAAGAGGAACCACTTGGATCGAGATAAATCACTAAAGGGACACACAAG
TGGGCATTTTCCCGAGGAACCGGGTCGTTCGGGCAAGAATTCCGCGAGGA
GTCCTCTAAGAAGCCAAACGAGAAGACGATTATCATTTGCAGGTTCACAG
GATACCGGGATAACTCCCCCTTCAAGTCCTTCACCACCCTCCACTAGGAA
GCGTAGACTACGCTCAAAGCTTTTTACCATTCCGAGTGATGAAGAAGATG
AATCCCAAAGAGGTCCACCCAAGTGTTCGGAAATACCAGACAGGGCGCAG
AAGCCTGTCGAGTGTGACAGAATTCCAGACGAAACTGAATGGTATCACGA
ACGCGAAATTGACACCTTCTCAAGCTCTGGGGAAGATAAGAATGAGCCCA
TACAAAATTCGAGCCCAAGAAAGAACGTTGCTGTTCGTTCAAAGAAGAGG
GTCTCCGCCGCAAAACCAGGTACACAAGCAGACCTTCTAACTAAACTATC
TCCGAGTCCAAAAGAACCAGTATTCGATGTATCCCAAGATTTCGTGGACG
ATGTTAACTTTAAAAAGCATGATGTTGATCGAGCGAATGTTCCTCATAGA
ACGGCCCACGTCCGTCCGCCCAGTAACGAAGTTATTGACTTGGTAGATGA
TGATGACTTTGAGGATATTGCTCGAAGGAGCACACAGAAAGATAATGGTT
TGTCATCTATTGAAGATGTGGATGGGAATGATGTAGAGAAACTAAACGAA
TTGCCGTCATATGACATAGACGATTCAAAACCGCCGCCCTTCAATCTGTA
TATTCTTTGCAACGATGGGGAATCCATTGTTGATATGAGAGACAGGCTCG
GAGAGAATGAGTTAATGGACAAAGTCATGCAAGCCCGCAATGCTGGTAGG
GAGATCATAGGAGGAGACAAACTTGGTCTAGCGGCGACTTTCAACAAAGA
TATTTTCTCTCGGTTTTCGAAAACTGTGGTTGGTGATCAAGTTTCTAGAC
AAAAGAGAAGCGCTTCTATAACGGAAAAGGCACTTCGAGGCGAATACAAC
TTCAACTACCGCGGGAGAGAGCGTGATCAAATGCGCAGGGGAAATCAGTC
TCGAAAAAGAGGGTCAACACGGACTGGAAGAGGCAAGAGCTATAGAAGCC
GATTGTCAAATTTAGGGCATCGTAGACGGTGA

Coding sequence (CDS) from alignment at tig00000853_pilon:163953..166334+

>Ggra4115.t1 ID=Ggra4115.t1|Name=Ggra4115.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2382bp|location=Sequence derived from alignment at tig00000853_pilon:163953..166334+ (Gracilaria gracilis GNS1m male)
ATGGGCCAGCGGAGAAAACCACTTTTTCGTCAGACCCAATTGAGCTTCAA
GAAAACTGACCCGAATCAGTCTTCACCGCTTCCCTCCCAAACACCGTTAA
AACCTCTTCCGCGACCGACAGCCCCGCTGGTATTCCGGAAATCCACCCCG
AAAAAGAAGCGTCGCATAGACAGTTGTGCATTTGATGACGAATGTTGGGA
AATGGGTCAACGTCTAATCGACGGCGAACCTCTAAATCCCAAAGAGAAAA
TTGTGGAAGAAGGCGCTTCGGTCGTAAATCTCGATGATTCGAATAGCGAT
GACGACTTCGAACCTCCAAGTGTGTTTTCGGAGGTGGCGCGCCAGCGACC
ACAATTGCTCACACCCACTCGAATGCGCAATGACCGCTCTTCGATGACTA
AGAGTTCGGCAAACAGAGGTAAAAAGACAAAGAAACCGATTCGCTATACT
ACCCCTTCCCAGAAGCGGGATTCGGCTCAAGCAGCAAACGCAAAACAGCG
CTCAATACCTGCCCTCGAATCGAGTTCTTCAGAAGACGAGGTCGACCATG
TCGTGTTTGAAGGTGAAAAAAGTGAACTCTCCGACACTGATGACGATGAA
CCGGTCCGCGCATCGCTTAGAAAGGGATCAAAACACGGGACGAGTTCAAG
ACACTTCTCTCCTGTTGTTCTCCATAGACGTGAGCAGCATGAGGATAGGA
GGACTGTACATGAAAGAACGAATGTGTTGAGGGCACCGAAATCGCCAGCT
ATCAAGAAAACTGCGACGTCAAATCGAATATCTTCCAATAGTCAACAACG
TATCAATAATTTTGGCAAATCCGAAAGAGATGCCCTTCTACAGGTCTCTG
AAAAGTGCTCAGGATCGAAACAGGCTCCTAAACGCGCTTGCGATTTACCT
CAGCTTTTCTCTGACGATAGCGATGATTCTATTGATATAAGAATTCGGAG
GAGCTCGCAGCGGAAAAGACCTCGCAGAAAGCGTCGTATCCAAGAATCTT
CCGAGGAAGATAGTCAACAAGAGAGCGAACAAGTGGCTGTGAAACAAGAT
ACACCTCGTCCAGGAGTAGAAGTGGAGTATAGTAGGAACGTTCCCGAAAT
AGAAGTACTTCTCGCCAGCGCATCAGAGAACGATAATCGACACCATCAGG
ATTATGAATTGCGTATCCTTGACGCTGAAGGAGGAATGGAAAGAAAAGAT
TCGAAGAGGAACCACTTGGATCGAGATAAATCACTAAAGGGACACACAAG
TGGGCATTTTCCCGAGGAACCGGGTCGTTCGGGCAAGAATTCCGCGAGGA
GTCCTCTAAGAAGCCAAACGAGAAGACGATTATCATTTGCAGGTTCACAG
GATACCGGGATAACTCCCCCTTCAAGTCCTTCACCACCCTCCACTAGGAA
GCGTAGACTACGCTCAAAGCTTTTTACCATTCCGAGTGATGAAGAAGATG
AATCCCAAAGAGGTCCACCCAAGTGTTCGGAAATACCAGACAGGGCGCAG
AAGCCTGTCGAGTGTGACAGAATTCCAGACGAAACTGAATGGTATCACGA
ACGCGAAATTGACACCTTCTCAAGCTCTGGGGAAGATAAGAATGAGCCCA
TACAAAATTCGAGCCCAAGAAAGAACGTTGCTGTTCGTTCAAAGAAGAGG
GTCTCCGCCGCAAAACCAGGTACACAAGCAGACCTTCTAACTAAACTATC
TCCGAGTCCAAAAGAACCAGTATTCGATGTATCCCAAGATTTCGTGGACG
ATGTTAACTTTAAAAAGCATGATGTTGATCGAGCGAATGTTCCTCATAGA
ACGGCCCACGTCCGTCCGCCCAGTAACGAAGTTATTGACTTGGTAGATGA
TGATGACTTTGAGGATATTGCTCGAAGGAGCACACAGAAAGATAATGGTT
TGTCATCTATTGAAGATGTGGATGGGAATGATGTAGAGAAACTAAACGAA
TTGCCGTCATATGACATAGACGATTCAAAACCGCCGCCCTTCAATCTGTA
TATTCTTTGCAACGATGGGGAATCCATTGTTGATATGAGAGACAGGCTCG
GAGAGAATGAGTTAATGGACAAAGTCATGCAAGCCCGCAATGCTGGTAGG
GAGATCATAGGAGGAGACAAACTTGGTCTAGCGGCGACTTTCAACAAAGA
TATTTTCTCTCGGTTTTCGAAAACTGTGGTTGGTGATCAAGTTTCTAGAC
AAAAGAGAAGCGCTTCTATAACGGAAAAGGCACTTCGAGGCGAATACAAC
TTCAACTACCGCGGGAGAGAGCGTGATCAAATGCGCAGGGGAAATCAGTC
TCGAAAAAGAGGGTCAACACGGACTGGAAGAGGCAAGAGCTATAGAAGCC
GATTGTCAAATTTAGGGCATCGTAGACGGTGA