Ggra4080.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4080.t1
Unique NameGgra4080.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:77358..78728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4080Ggra4080Gracilaria gracilis GNS1m malegenetig00000853_pilon 77358..78728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4080.t1Ggra4080.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 77358..78728 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4080.t1.start1Ggra4080.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 77358..77360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4080.t1.CDS1Ggra4080.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 77358..77375 +
Ggra4080.t1.CDS2Ggra4080.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 77449..77525 +
Ggra4080.t1.CDS3Ggra4080.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000853_pilon 77951..78728 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4080.t1.exon1Ggra4080.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 77358..77375 +
Ggra4080.t1.exon2Ggra4080.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 77449..77525 +
Ggra4080.t1.exon3Ggra4080.t1.exon3Gracilaria gracilis GNS1m maleexontig00000853_pilon 77951..78728 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4080.t1.intron1Ggra4080.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 77376..77448 +
Ggra4080.t1.intron2Ggra4080.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000853_pilon 77526..77950 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4080.t1.stop1Ggra4080.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 78726..78728 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4080.t1 ID=Ggra4080.t1|Name=Ggra4080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MLFCPVCGNYLLANKTPPGSFQEPTWRFECRTHVLQEHGIHLDLFLAGSD
EFETRSMAEKYNAGYSIFPNSPLGAKHDKGLQSLRDFYTNKSIQHQQPLP
DAVTIFGSDDVVNKEFFLCVKDLLRRTPGVHVVGLEDLYFQDLRTKRLVY
TRGYKSFQVPISGTLGCGRVYSWAILEDLDWHLWDTDRERGLDQSAVRNV
MTRFPLIGEVSVALFGAQHGIVAVDIKSDGYDTGTNIWRFDEVISAVGKN
GRLHDFEEKNAEIVLTDAFGDEFVWNLDQLRSQMAESNAA*
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spliced messenger RNA

>Ggra4080.t1 ID=Ggra4080.t1|Name=Ggra4080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000853_pilon:77358..78728+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATTCTGCCCAGTGTGTGGTAACTATCTCCTCGCCAACAAAACACC
TCCTGGATCGTTCCAAGAACCCACCTGGAGATTTGAATGCCGCACACATG
TGCTCCAAGAGCACGGGATTCACTTGGATCTGTTTTTGGCGGGTTCGGAT
GAGTTCGAAACAAGGTCTATGGCAGAGAAGTATAATGCCGGGTACTCCAT
CTTTCCAAACAGCCCGCTCGGTGCGAAACATGATAAAGGACTGCAGTCGT
TGCGAGATTTCTACACAAACAAGAGTATTCAGCATCAGCAACCCCTCCCA
GACGCCGTGACAATTTTTGGCTCAGATGACGTTGTAAACAAAGAATTCTT
CTTGTGTGTAAAAGACTTGCTGAGAAGGACCCCCGGAGTCCATGTTGTGG
GTTTAGAAGACCTCTACTTTCAAGACCTGAGGACAAAGCGTCTGGTGTAC
ACAAGAGGATATAAGTCTTTCCAAGTTCCTATATCTGGAACGCTGGGATG
TGGGAGAGTTTATTCATGGGCCATTCTTGAAGACTTAGACTGGCACCTTT
GGGATACTGATAGAGAACGAGGACTTGACCAAAGCGCTGTGAGAAATGTT
ATGACTCGTTTTCCACTTATCGGCGAGGTTAGTGTAGCACTATTTGGAGC
TCAACATGGTATTGTTGCTGTCGATATCAAGTCAGATGGGTACGACACGG
GTACGAACATATGGAGATTCGATGAGGTCATAAGTGCTGTCGGTAAGAAT
GGGCGACTTCACGATTTTGAAGAAAAGAATGCAGAGATAGTGTTGACCGA
CGCGTTTGGTGATGAGTTCGTCTGGAATCTTGATCAGTTACGCTCTCAGA
TGGCGGAGTCTAATGCTGCCTGA
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protein sequence of Ggra4080.t1

>Ggra4080.t1 ID=Ggra4080.t1|Name=Ggra4080.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MLFCPVCGNYLLANKTPPGSFQEPTWRFECRTHVLQEHGIHLDLFLAGSD
EFETRSMAEKYNAGYSIFPNSPLGAKHDKGLQSLRDFYTNKSIQHQQPLP
DAVTIFGSDDVVNKEFFLCVKDLLRRTPGVHVVGLEDLYFQDLRTKRLVY
TRGYKSFQVPISGTLGCGRVYSWAILEDLDWHLWDTDRERGLDQSAVRNV
MTRFPLIGEVSVALFGAQHGIVAVDIKSDGYDTGTNIWRFDEVISAVGKN
GRLHDFEEKNAEIVLTDAFGDEFVWNLDQLRSQMAESNAA*
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mRNA from alignment at tig00000853_pilon:77358..78728+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4080.t1 ID=Ggra4080.t1|Name=Ggra4080.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000853_pilon:77358..78728+ (Gracilaria gracilis GNS1m male)
ATGTTATTCTGCCCAGTGGTAAGGTCGAGAGTGCTCTTCCTCTGATAGGA
CATTGCCTCTAACAAATTATGCTTTTCTTTGCACAACTCAGTGTGGTAAC
TATCTCCTCGCCAACAAAACACCTCCTGGATCGTTCCAAGAACCCACCTG
GAGATTTGAATGCCGCACGTGCTCTTACATTCACAGGATAAACAGCCGAA
TTGAAAGAAAGGTAACCAATTTACCAAAGAAACAAGTCGAAGACGTTCTC
GGCGGAGAGGCAGCCTGGGAGCTCGCTGATTCCACCGACGCAACGTGCCC
GAGATGCACGCACCAGAAAGCGTACTACTTCCAGATGCAAACAAGATCCG
CAGACGAACCGATGACAACTTTCTATCGATGTGCAAACGCTTCATGCGCG
CATCAATGGAAAGAAAACTAATCCGCGTTCGAGCTTTCTCTTTCCCATTC
TTGTTTTTTCTCGCTGTGCTCTTCTTTCTCTCTTCATTGCTTACGGCCGT
AGCCAGCGACGAGATCAAAATCGTTGTCTTTATCTGCGTTTGGAAGCGCC
CATTGCTCACCGGTTTCGTACTGCGACACTTTGTACATCTTAGACATGTG
CTCCAAGAGCACGGGATTCACTTGGATCTGTTTTTGGCGGGTTCGGATGA
GTTCGAAACAAGGTCTATGGCAGAGAAGTATAATGCCGGGTACTCCATCT
TTCCAAACAGCCCGCTCGGTGCGAAACATGATAAAGGACTGCAGTCGTTG
CGAGATTTCTACACAAACAAGAGTATTCAGCATCAGCAACCCCTCCCAGA
CGCCGTGACAATTTTTGGCTCAGATGACGTTGTAAACAAAGAATTCTTCT
TGTGTGTAAAAGACTTGCTGAGAAGGACCCCCGGAGTCCATGTTGTGGGT
TTAGAAGACCTCTACTTTCAAGACCTGAGGACAAAGCGTCTGGTGTACAC
AAGAGGATATAAGTCTTTCCAAGTTCCTATATCTGGAACGCTGGGATGTG
GGAGAGTTTATTCATGGGCCATTCTTGAAGACTTAGACTGGCACCTTTGG
GATACTGATAGAGAACGAGGACTTGACCAAAGCGCTGTGAGAAATGTTAT
GACTCGTTTTCCACTTATCGGCGAGGTTAGTGTAGCACTATTTGGAGCTC
AACATGGTATTGTTGCTGTCGATATCAAGTCAGATGGGTACGACACGGGT
ACGAACATATGGAGATTCGATGAGGTCATAAGTGCTGTCGGTAAGAATGG
GCGACTTCACGATTTTGAAGAAAAGAATGCAGAGATAGTGTTGACCGACG
CGTTTGGTGATGAGTTCGTCTGGAATCTTGATCAGTTACGCTCTCAGATG
GCGGAGTCTAATGCTGCCTGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:77358..78728+

>Ggra4080.t1 ID=Ggra4080.t1|Name=Ggra4080.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000853_pilon:77358..78728+ (Gracilaria gracilis GNS1m male)
ATGTTATTCTGCCCAGTGTGTGGTAACTATCTCCTCGCCAACAAAACACC
TCCTGGATCGTTCCAAGAACCCACCTGGAGATTTGAATGCCGCACACATG
TGCTCCAAGAGCACGGGATTCACTTGGATCTGTTTTTGGCGGGTTCGGAT
GAGTTCGAAACAAGGTCTATGGCAGAGAAGTATAATGCCGGGTACTCCAT
CTTTCCAAACAGCCCGCTCGGTGCGAAACATGATAAAGGACTGCAGTCGT
TGCGAGATTTCTACACAAACAAGAGTATTCAGCATCAGCAACCCCTCCCA
GACGCCGTGACAATTTTTGGCTCAGATGACGTTGTAAACAAAGAATTCTT
CTTGTGTGTAAAAGACTTGCTGAGAAGGACCCCCGGAGTCCATGTTGTGG
GTTTAGAAGACCTCTACTTTCAAGACCTGAGGACAAAGCGTCTGGTGTAC
ACAAGAGGATATAAGTCTTTCCAAGTTCCTATATCTGGAACGCTGGGATG
TGGGAGAGTTTATTCATGGGCCATTCTTGAAGACTTAGACTGGCACCTTT
GGGATACTGATAGAGAACGAGGACTTGACCAAAGCGCTGTGAGAAATGTT
ATGACTCGTTTTCCACTTATCGGCGAGGTTAGTGTAGCACTATTTGGAGC
TCAACATGGTATTGTTGCTGTCGATATCAAGTCAGATGGGTACGACACGG
GTACGAACATATGGAGATTCGATGAGGTCATAAGTGCTGTCGGTAAGAAT
GGGCGACTTCACGATTTTGAAGAAAAGAATGCAGAGATAGTGTTGACCGA
CGCGTTTGGTGATGAGTTCGTCTGGAATCTTGATCAGTTACGCTCTCAGA
TGGCGGAGTCTAATGCTGCCTGA
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