Ggra4169.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4169.t1
Unique NameGgra4169.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:471347..472739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4169Ggra4169Gracilaria gracilis GNS1m malegenetig00000853_pilon 471347..472739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4169.t1Ggra4169.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 471347..472739 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4169.t1.start1Ggra4169.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 471347..471349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4169.t1.CDS1Ggra4169.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 471347..471564 +
Ggra4169.t1.CDS2Ggra4169.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000853_pilon 471791..472739 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4169.t1.exon1Ggra4169.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 471347..471564 +
Ggra4169.t1.exon2Ggra4169.t1.exon2Gracilaria gracilis GNS1m maleexontig00000853_pilon 471791..472739 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4169.t1.intron1Ggra4169.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000853_pilon 471565..471790 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4169.t1.stop1Ggra4169.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 472737..472739 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4169.t1 ID=Ggra4169.t1|Name=Ggra4169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MSLSHIEDSNSDVIDMSRPSTSAFHKFVKLFFLFRDLIAEWDGGPDLPRE
IGFRGVIDFVAERYKEIPKAKSMNKNTQNRTEFIPELEGSPFQVTLYLSL
LGNVMKKNETLKIQRRQQPKKKRRLEDLPALYIPTFSSFSKENCDRMGYA
IGEIVLSWNAIARFLGFPDAESMLKPYLFINTKTLLYMVVLYRRQVYAPS
SQSTKFQDGDAPEKTVGGFAEAMDDICDRNLRTLAHEFLSDLFMVCTHDC
LYSMGKGTLHEWIEFTNVRVSRTPGSPGYGLPSRFGKLSERLWKPIQDTR
ASGGFPVGSVSEAPVDNVQPAPPRRELVNLVSSDEEDFQPQPEDHQSRMA
GYNIQKMGIEPPLKGMSNILRVNMDAVWKGMKKSHFVA*
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spliced messenger RNA

>Ggra4169.t1 ID=Ggra4169.t1|Name=Ggra4169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000853_pilon:471347..472739+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTTTCGCACATCGAGGACTCCAACTCGGACGTCATAGACATGAG
TCGTCCGAGTACTTCTGCGTTCCACAAGTTTGTCAAACTCTTCTTCCTGT
TCAGAGATTTGATTGCAGAGTGGGATGGAGGTCCAGATCTACCGCGGGAA
ATCGGATTTAGGGGAGTTATTGACTTCGTTGCGGAACGCTATAAGGAAAT
CCCAAAAGCGAAAAGCATGAACAAGAATACACAGAATCGAACTGAGTTTA
TTCCAGAACTTGAGGGCTCCCCTTTCCAAGTGACCCTCTACCTTTCTCTC
CTTGGAAATGTAATGAAGAAGAACGAGACCCTCAAGATCCAGAGAAGACA
ACAGCCGAAGAAGAAAAGAAGACTTGAAGATCTTCCTGCGCTCTACATAC
CCACGTTTTCTTCTTTCTCCAAGGAGAACTGTGATCGAATGGGGTATGCT
ATTGGGGAAATCGTGCTGTCTTGGAATGCAATTGCCCGTTTTCTCGGGTT
TCCAGACGCTGAGAGCATGCTGAAACCGTACCTTTTCATCAATACCAAGA
CGTTGCTGTATATGGTTGTGCTCTATCGACGGCAAGTATATGCTCCTTCC
AGCCAGAGTACTAAATTCCAGGATGGTGATGCTCCAGAAAAGACGGTGGG
GGGATTTGCCGAGGCCATGGACGATATTTGTGACAGGAATCTACGAACCC
TGGCTCATGAATTCCTGAGTGACCTCTTTATGGTGTGCACCCACGATTGT
CTCTATAGCATGGGGAAGGGAACTCTGCATGAATGGATTGAGTTCACGAA
TGTGAGAGTTTCTCGTACTCCCGGGAGTCCGGGTTATGGCCTACCTTCTA
GATTTGGAAAGCTGTCTGAGCGGCTATGGAAGCCCATTCAGGACACGCGA
GCTTCAGGAGGCTTCCCAGTGGGCTCTGTCTCAGAAGCCCCCGTAGACAA
CGTCCAGCCCGCACCCCCTCGTCGAGAGCTTGTGAACCTAGTGAGCTCCG
ATGAAGAGGACTTCCAACCCCAACCGGAGGACCATCAATCACGGATGGCT
GGGTATAACATCCAGAAGATGGGTATTGAACCGCCTCTGAAGGGGATGAG
CAACATACTCAGAGTGAATATGGACGCTGTGTGGAAGGGGATGAAGAAAT
CCCATTTCGTAGCGTAA
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protein sequence of Ggra4169.t1

>Ggra4169.t1 ID=Ggra4169.t1|Name=Ggra4169.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MSLSHIEDSNSDVIDMSRPSTSAFHKFVKLFFLFRDLIAEWDGGPDLPRE
IGFRGVIDFVAERYKEIPKAKSMNKNTQNRTEFIPELEGSPFQVTLYLSL
LGNVMKKNETLKIQRRQQPKKKRRLEDLPALYIPTFSSFSKENCDRMGYA
IGEIVLSWNAIARFLGFPDAESMLKPYLFINTKTLLYMVVLYRRQVYAPS
SQSTKFQDGDAPEKTVGGFAEAMDDICDRNLRTLAHEFLSDLFMVCTHDC
LYSMGKGTLHEWIEFTNVRVSRTPGSPGYGLPSRFGKLSERLWKPIQDTR
ASGGFPVGSVSEAPVDNVQPAPPRRELVNLVSSDEEDFQPQPEDHQSRMA
GYNIQKMGIEPPLKGMSNILRVNMDAVWKGMKKSHFVA*
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mRNA from alignment at tig00000853_pilon:471347..472739+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4169.t1 ID=Ggra4169.t1|Name=Ggra4169.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1393bp|location=Sequence derived from alignment at tig00000853_pilon:471347..472739+ (Gracilaria gracilis GNS1m male)
ATGAGTCTTTCGCACATCGAGGACTCCAACTCGGACGTCATAGACATGAG
TCGTCCGAGTACTTCTGCGTTCCACAAGTTTGTCAAACTCTTCTTCCTGT
TCAGAGATTTGATTGCAGAGTGGGATGGAGGTCCAGATCTACCGCGGGAA
ATCGGATTTAGGGGAGTTATTGACTTCGTTGCGGAACGCTATAAGGAAAT
CCCAAAAGCGAAAAGCATGTTCGAAGAAGCTACCAACTCGAAGAACCTTC
AGAATTTTTTCTCTTCAGCAACTTCGACAGAGTATTGTGATGAAGaagcc
tatcgagcaacgatatgctgtggcgaagcggttggatagaacggatggcg
atgaggaccaaaggccccgagatcttcttcttctcctcatgaaggagggt
acatacattcccgtgagagccctcctgacgttcTTCGTCTTGAGGAACAA
GAATACACAGAATCGAACTGAGTTTATTCCAGAACTTGAGGGCTCCCCTT
TCCAAGTGACCCTCTACCTTTCTCTCCTTGGAAATGTAATGAAGAAGAAC
GAGACCCTCAAGATCCAGAGAAGACAACAGCCGAAGAAGAAAAGAAGACT
TGAAGATCTTCCTGCGCTCTACATACCCACGTTTTCTTCTTTCTCCAAGG
AGAACTGTGATCGAATGGGGTATGCTATTGGGGAAATCGTGCTGTCTTGG
AATGCAATTGCCCGTTTTCTCGGGTTTCCAGACGCTGAGAGCATGCTGAA
ACCGTACCTTTTCATCAATACCAAGACGTTGCTGTATATGGTTGTGCTCT
ATCGACGGCAAGTATATGCTCCTTCCAGCCAGAGTACTAAATTCCAGGAT
GGTGATGCTCCAGAAAAGACGGTGGGGGGATTTGCCGAGGCCATGGACGA
TATTTGTGACAGGAATCTACGAACCCTGGCTCATGAATTCCTGAGTGACC
TCTTTATGGTGTGCACCCACGATTGTCTCTATAGCATGGGGAAGGGAACT
CTGCATGAATGGATTGAGTTCACGAATGTGAGAGTTTCTCGTACTCCCGG
GAGTCCGGGTTATGGCCTACCTTCTAGATTTGGAAAGCTGTCTGAGCGGC
TATGGAAGCCCATTCAGGACACGCGAGCTTCAGGAGGCTTCCCAGTGGGC
TCTGTCTCAGAAGCCCCCGTAGACAACGTCCAGCCCGCACCCCCTCGTCG
AGAGCTTGTGAACCTAGTGAGCTCCGATGAAGAGGACTTCCAACCCCAAC
CGGAGGACCATCAATCACGGATGGCTGGGTATAACATCCAGAAGATGGGT
ATTGAACCGCCTCTGAAGGGGATGAGCAACATACTCAGAGTGAATATGGA
CGCTGTGTGGAAGGGGATGAAGAAATCCCATTTCGTAGCGTAA
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Coding sequence (CDS) from alignment at tig00000853_pilon:471347..472739+

>Ggra4169.t1 ID=Ggra4169.t1|Name=Ggra4169.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000853_pilon:471347..472739+ (Gracilaria gracilis GNS1m male)
ATGAGTCTTTCGCACATCGAGGACTCCAACTCGGACGTCATAGACATGAG
TCGTCCGAGTACTTCTGCGTTCCACAAGTTTGTCAAACTCTTCTTCCTGT
TCAGAGATTTGATTGCAGAGTGGGATGGAGGTCCAGATCTACCGCGGGAA
ATCGGATTTAGGGGAGTTATTGACTTCGTTGCGGAACGCTATAAGGAAAT
CCCAAAAGCGAAAAGCATGAACAAGAATACACAGAATCGAACTGAGTTTA
TTCCAGAACTTGAGGGCTCCCCTTTCCAAGTGACCCTCTACCTTTCTCTC
CTTGGAAATGTAATGAAGAAGAACGAGACCCTCAAGATCCAGAGAAGACA
ACAGCCGAAGAAGAAAAGAAGACTTGAAGATCTTCCTGCGCTCTACATAC
CCACGTTTTCTTCTTTCTCCAAGGAGAACTGTGATCGAATGGGGTATGCT
ATTGGGGAAATCGTGCTGTCTTGGAATGCAATTGCCCGTTTTCTCGGGTT
TCCAGACGCTGAGAGCATGCTGAAACCGTACCTTTTCATCAATACCAAGA
CGTTGCTGTATATGGTTGTGCTCTATCGACGGCAAGTATATGCTCCTTCC
AGCCAGAGTACTAAATTCCAGGATGGTGATGCTCCAGAAAAGACGGTGGG
GGGATTTGCCGAGGCCATGGACGATATTTGTGACAGGAATCTACGAACCC
TGGCTCATGAATTCCTGAGTGACCTCTTTATGGTGTGCACCCACGATTGT
CTCTATAGCATGGGGAAGGGAACTCTGCATGAATGGATTGAGTTCACGAA
TGTGAGAGTTTCTCGTACTCCCGGGAGTCCGGGTTATGGCCTACCTTCTA
GATTTGGAAAGCTGTCTGAGCGGCTATGGAAGCCCATTCAGGACACGCGA
GCTTCAGGAGGCTTCCCAGTGGGCTCTGTCTCAGAAGCCCCCGTAGACAA
CGTCCAGCCCGCACCCCCTCGTCGAGAGCTTGTGAACCTAGTGAGCTCCG
ATGAAGAGGACTTCCAACCCCAACCGGAGGACCATCAATCACGGATGGCT
GGGTATAACATCCAGAAGATGGGTATTGAACCGCCTCTGAAGGGGATGAG
CAACATACTCAGAGTGAATATGGACGCTGTGTGGAAGGGGATGAAGAAAT
CCCATTTCGTAGCGTAA
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