Ggra4098.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4098.t1
Unique NameGgra4098.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length424
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000853_piloncontigtig00000853_pilon:124920..126191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA23202
PFAMszf-CHY,zf-RING_2,zinc_ribbon_6
Max annot lvl2759|Eukaryota
KEGG koko:K19619
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue2.18e-81
EggNOG OGsKOG1940@1|root,KOG1940@2759|Eukaryota
Descriptionzinc ion binding
COG categoryS
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4098Ggra4098Gracilaria gracilis GNS1m malegenetig00000853_pilon 124920..126191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4098.t1.stop1Ggra4098.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000853_pilon 124920..124922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4098.t1.CDS1Ggra4098.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000853_pilon 124920..126191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4098.t1.exon1Ggra4098.t1.exon1Gracilaria gracilis GNS1m maleexontig00000853_pilon 124920..126191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4098.t1.start1Ggra4098.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000853_pilon 126189..126191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4098.t1Ggra4098.t1Gracilaria gracilis GNS1m malepolypeptidetig00000853_pilon 124920..126191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4098.t1 ID=Ggra4098.t1|Name=Ggra4098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=424bp
MCSPDCLSHSHPRSSTSSSPPPPPPPPPQPTSSSPQPTPSPPPPHATQPP
ASAECCSPVHKRRRVDAHLACDTSVPPAMSSPSRQLQDAVRHIMTTESSP
RRRQAAISGLFFKRNAALIAKHEPEPEPMHHLESFPGMGAPSQCAHYQRN
CWILAECCQRYYPCRRCHDEQQSHEIDRYATKFVACVKCGDAHQPVASHC
RSCNVRFAHYFCDVCKFYDDTPGRHAYHCDGCGMCRVGKGLGIDNYHCNG
CSNCIPIAFKEKHPCRERSLDANCPICTEYLATSTDPMVFLRCGHTMHAN
CLKELAASGYTCPICNKSMADMTKWYKQLDEQIKNEVVPREFMYKRSLVL
CHECNEKTQVRFHLVHHKCAACGSYNTRLLRHFDVAPCDEAASAAAAAAA
AAPSLTADGLVRTDRAVEEATST*
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spliced messenger RNA

>Ggra4098.t1 ID=Ggra4098.t1|Name=Ggra4098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000853_pilon:124920..126191- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCCCCAGATTGTTTGTCTCACTCACACCCTCGCTCCTCCACTTC
GTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGACGTCGTCAT
CGCCACAGCCTACCCCTTCGCCCCCGCCCCCTCACGCTACACAACCCCCC
GCGTCGGCTGAGTGCTGCTCGCCGGTGCACAAACGACGCCGTGTGGACGC
CCATCTCGCATGCGATACCTCTGTGCCGCCCGCCATGAGCAGTCCGTCTC
GCCAGTTGCAGGATGCCGTGCGCCACATCATGACCACCGAGTCGTCCCCG
CGCAGAAGACAGGCCGCCATCTCCGGCCTGTTCTTCAAAAGAAACGCCGC
GCTCATTGCAAAGCATGAGCCTGAGCCTGAGCCCATGCATCACCTCGAAT
CGTTCCCCGGAATGGGCGCGCCGTCGCAATGCGCGCACTATCAACGCAAT
TGTTGGATTCTGGCAGAGTGCTGTCAGCGCTACTACCCGTGTCGCAGATG
TCATGATGAACAGCAGTCGCATGAAATCGATCGCTACGCCACAAAGTTTG
TGGCGTGCGTCAAGTGTGGCGATGCTCATCAGCCCGTGGCGTCGCATTGC
CGCTCTTGTAACGTTCGGTTTGCTCATTATTTTTGTGACGTGTGCAAGTT
TTACGACGACACACCCGGCAGGCATGCGTACCACTGCGACGGGTGTGGCA
TGTGCAGAGTGGGCAAAGGGTTGGGCATTGACAATTACCACTGCAACGGC
TGCAGCAACTGCATCCCCATTGCGTTCAAAGAGAAGCACCCTTGCAGAGA
GCGAAGCTTGGACGCCAACTGCCCCATCTGTACAGAGTATCTGGCCACCA
GCACTGATCCCATGGTGTTCCTGCGCTGCGGCCATACCATGCACGCCAAC
TGCCTCAAAGAGCTTGCGGCCAGCGGGTATACATGTCCCATCTGCAACAA
ATCCATGGCCGACATGACCAAGTGGTACAAGCAGCTGGACGAACAGATCA
AGAATGAAGTGGTACCGCGCGAATTTATGTACAAACGCTCGCTGGTACTG
TGTCATGAATGCAACGAAAAGACGCAGGTTCGCTTTCATCTGGTGCACCA
CAAATGCGCGGCTTGCGGCAGCTACAATACCAGATTACTGCGCCATTTCG
ATGTTGCGCCTTGCGATGAAGCCGCCAGTGCAGCTGCGGCTGCGGCGGCC
GCCGCACCCTCACTCACAGCCGATGGTTTGGTTCGGACAGATCGTGCGGT
AGAAGAGGCTACCTCTACATGA
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protein sequence of Ggra4098.t1

>Ggra4098.t1 ID=Ggra4098.t1|Name=Ggra4098.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=424bp
MCSPDCLSHSHPRSSTSSSPPPPPPPPPQPTSSSPQPTPSPPPPHATQPP
ASAECCSPVHKRRRVDAHLACDTSVPPAMSSPSRQLQDAVRHIMTTESSP
RRRQAAISGLFFKRNAALIAKHEPEPEPMHHLESFPGMGAPSQCAHYQRN
CWILAECCQRYYPCRRCHDEQQSHEIDRYATKFVACVKCGDAHQPVASHC
RSCNVRFAHYFCDVCKFYDDTPGRHAYHCDGCGMCRVGKGLGIDNYHCNG
CSNCIPIAFKEKHPCRERSLDANCPICTEYLATSTDPMVFLRCGHTMHAN
CLKELAASGYTCPICNKSMADMTKWYKQLDEQIKNEVVPREFMYKRSLVL
CHECNEKTQVRFHLVHHKCAACGSYNTRLLRHFDVAPCDEAASAAAAAAA
AAPSLTADGLVRTDRAVEEATST*
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mRNA from alignment at tig00000853_pilon:124920..126191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4098.t1 ID=Ggra4098.t1|Name=Ggra4098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1272bp|location=Sequence derived from alignment at tig00000853_pilon:124920..126191- (Gracilaria gracilis GNS1m male)
ATGTGCTCCCCAGATTGTTTGTCTCACTCACACCCTCGCTCCTCCACTTC
GTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGACGTCGTCAT
CGCCACAGCCTACCCCTTCGCCCCCGCCCCCTCACGCTACACAACCCCCC
GCGTCGGCTGAGTGCTGCTCGCCGGTGCACAAACGACGCCGTGTGGACGC
CCATCTCGCATGCGATACCTCTGTGCCGCCCGCCATGAGCAGTCCGTCTC
GCCAGTTGCAGGATGCCGTGCGCCACATCATGACCACCGAGTCGTCCCCG
CGCAGAAGACAGGCCGCCATCTCCGGCCTGTTCTTCAAAAGAAACGCCGC
GCTCATTGCAAAGCATGAGCCTGAGCCTGAGCCCATGCATCACCTCGAAT
CGTTCCCCGGAATGGGCGCGCCGTCGCAATGCGCGCACTATCAACGCAAT
TGTTGGATTCTGGCAGAGTGCTGTCAGCGCTACTACCCGTGTCGCAGATG
TCATGATGAACAGCAGTCGCATGAAATCGATCGCTACGCCACAAAGTTTG
TGGCGTGCGTCAAGTGTGGCGATGCTCATCAGCCCGTGGCGTCGCATTGC
CGCTCTTGTAACGTTCGGTTTGCTCATTATTTTTGTGACGTGTGCAAGTT
TTACGACGACACACCCGGCAGGCATGCGTACCACTGCGACGGGTGTGGCA
TGTGCAGAGTGGGCAAAGGGTTGGGCATTGACAATTACCACTGCAACGGC
TGCAGCAACTGCATCCCCATTGCGTTCAAAGAGAAGCACCCTTGCAGAGA
GCGAAGCTTGGACGCCAACTGCCCCATCTGTACAGAGTATCTGGCCACCA
GCACTGATCCCATGGTGTTCCTGCGCTGCGGCCATACCATGCACGCCAAC
TGCCTCAAAGAGCTTGCGGCCAGCGGGTATACATGTCCCATCTGCAACAA
ATCCATGGCCGACATGACCAAGTGGTACAAGCAGCTGGACGAACAGATCA
AGAATGAAGTGGTACCGCGCGAATTTATGTACAAACGCTCGCTGGTACTG
TGTCATGAATGCAACGAAAAGACGCAGGTTCGCTTTCATCTGGTGCACCA
CAAATGCGCGGCTTGCGGCAGCTACAATACCAGATTACTGCGCCATTTCG
ATGTTGCGCCTTGCGATGAAGCCGCCAGTGCAGCTGCGGCTGCGGCGGCC
GCCGCACCCTCACTCACAGCCGATGGTTTGGTTCGGACAGATCGTGCGGT
AGAAGAGGCTACCTCTACATGA
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Coding sequence (CDS) from alignment at tig00000853_pilon:124920..126191-

>Ggra4098.t1 ID=Ggra4098.t1|Name=Ggra4098.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1272bp|location=Sequence derived from alignment at tig00000853_pilon:124920..126191- (Gracilaria gracilis GNS1m male)
ATGTGCTCCCCAGATTGTTTGTCTCACTCACACCCTCGCTCCTCCACTTC
GTCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCAGCCGACGTCGTCAT
CGCCACAGCCTACCCCTTCGCCCCCGCCCCCTCACGCTACACAACCCCCC
GCGTCGGCTGAGTGCTGCTCGCCGGTGCACAAACGACGCCGTGTGGACGC
CCATCTCGCATGCGATACCTCTGTGCCGCCCGCCATGAGCAGTCCGTCTC
GCCAGTTGCAGGATGCCGTGCGCCACATCATGACCACCGAGTCGTCCCCG
CGCAGAAGACAGGCCGCCATCTCCGGCCTGTTCTTCAAAAGAAACGCCGC
GCTCATTGCAAAGCATGAGCCTGAGCCTGAGCCCATGCATCACCTCGAAT
CGTTCCCCGGAATGGGCGCGCCGTCGCAATGCGCGCACTATCAACGCAAT
TGTTGGATTCTGGCAGAGTGCTGTCAGCGCTACTACCCGTGTCGCAGATG
TCATGATGAACAGCAGTCGCATGAAATCGATCGCTACGCCACAAAGTTTG
TGGCGTGCGTCAAGTGTGGCGATGCTCATCAGCCCGTGGCGTCGCATTGC
CGCTCTTGTAACGTTCGGTTTGCTCATTATTTTTGTGACGTGTGCAAGTT
TTACGACGACACACCCGGCAGGCATGCGTACCACTGCGACGGGTGTGGCA
TGTGCAGAGTGGGCAAAGGGTTGGGCATTGACAATTACCACTGCAACGGC
TGCAGCAACTGCATCCCCATTGCGTTCAAAGAGAAGCACCCTTGCAGAGA
GCGAAGCTTGGACGCCAACTGCCCCATCTGTACAGAGTATCTGGCCACCA
GCACTGATCCCATGGTGTTCCTGCGCTGCGGCCATACCATGCACGCCAAC
TGCCTCAAAGAGCTTGCGGCCAGCGGGTATACATGTCCCATCTGCAACAA
ATCCATGGCCGACATGACCAAGTGGTACAAGCAGCTGGACGAACAGATCA
AGAATGAAGTGGTACCGCGCGAATTTATGTACAAACGCTCGCTGGTACTG
TGTCATGAATGCAACGAAAAGACGCAGGTTCGCTTTCATCTGGTGCACCA
CAAATGCGCGGCTTGCGGCAGCTACAATACCAGATTACTGCGCCATTTCG
ATGTTGCGCCTTGCGATGAAGCCGCCAGTGCAGCTGCGGCTGCGGCGGCC
GCCGCACCCTCACTCACAGCCGATGGTTTGGTTCGGACAGATCGTGCGGT
AGAAGAGGCTACCTCTACATGA
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