Ggra3266.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3266.t1
Unique Name	Ggra3266.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	378

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000851_pilon	contig	tig00000851_pilon:158164..159297 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	944481.JAFP01000001_gene334
PFAMs	AMP-binding,AMP-binding_C_2,LuxC
Max annot lvl	28221\|Deltaproteobacteria
Evalue	3.28e-13
EggNOG OGs	COG1012@1\|root,COG1541@1\|root,COG1012@2\|Bacteria,COG1541@2\|Bacteria,1MV1W@1224\|Proteobacteria,42T0Z@68525\|delta/epsilon subdivisions,2WP97@28221\|Deltaproteobacteria,2M7K4@213113\|Desulfurellales
Description	Acyl-CoA reductase (LuxC)
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3266	Ggra3266	Gracilaria gracilis GNS1m male	gene	tig00000851_pilon 158164..159297 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3266.t1.start1	Ggra3266.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000851_pilon 158164..158166 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3266.t1.CDS1	Ggra3266.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000851_pilon 158164..159297 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3266.t1.exon1	Ggra3266.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000851_pilon 158164..159297 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3266.t1.stop1	Ggra3266.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000851_pilon 159295..159297 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3266.t1	Ggra3266.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000851_pilon 158164..159297 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000851_pilon:158164..159297+
coding sequence from alignment at tig00000851_pilon:158164..159297+

mRNA sequence

>Ggra3266.t1 ID=Ggra3266.t1|Name=Ggra3266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MTKTQYVKSMDNMFSKLFYGKGSMYWSPSGGSTSSSTATRVAVPTASSEM
HIMRTNYRELCVDRDLFNSNTLAVNLLCSYNLSTSMEVQRALLQDAGATH
LGVGPNLSDDKVCDIIEQYGANMLIGGGSHIIQFTIYCLRNNRRLPTIKR
ISHGGENFGDAVAKCFSKVWHEDVGVYGMYGSSEAGIFALKRPEQLCYEI
MPDSVHLEIVDEHGNEVPTGQVGTIVVTNLVREILPQVRYYTGDLARFVS
EERNKIDLLGRDLKSVQHQIGSRTVSWDEIEEYVRPTLGQFFGGLCLYQI
WIHNIPNDKLRITLPVYANFVSEAMEEAFSKELVQKLWKLFRTDKVVSDI
GVKMVRRSEEMSCHMFSNKLNSFVIKQ*

spliced messenger RNA

>Ggra3266.t1 ID=Ggra3266.t1|Name=Ggra3266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000851_pilon:158164..159297+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAAACCCAATACGTCAAGAGCATGGATAACATGTTTTCCAAGCT
CTTCTACGGAAAGGGTTCAATGTACTGGTCTCCGTCGGGAGGCTCTACGT
CTTCGTCGACCGCGACTAGAGTGGCTGTGCCCACTGCCTCATCTGAGATG
CATATAATGAGAACAAACTACCGAGAGTTGTGCGTGGACCGGGACCTATT
CAATTCGAACACCCTGGCTGTGAACTTGCTTTGTTCGTACAACCTCAGCA
CGAGCATGGAGGTCCAACGTGCACTTCTTCAAGATGCTGGGGCAACGCAT
CTGGGAGTTGGGCCGAATCTGAGTGACGACAAAGTTTGTGATATCATCGA
ACAGTATGGGGCTAATATGTTGATTGGAGGGGGTTCGCATATCATCCAGT
TTACTATATACTGCCTTCGCAACAACCGCAGGTTGCCCACTATTAAACGC
ATCTCGCATGGGGGAGAGAATTTTGGAGACGCGGTTGCGAAGTGTTTCTC
CAAGGTGTGGCATGAAGATGTCGGTGTGTACGGTATGTATGGCAGCTCCG
AAGCGGGAATTTTCGCACTGAAGCGACCTGAGCAACTCTGTTACGAAATC
ATGCCGGACAGTGTACATCTTGAAATCGTGGATGAGCACGGAAATGAGGT
TCCGACGGGGCAAGTAGGAACAATTGTCGTTACTAACCTAGTACGAGAGA
TTCTCCCTCAGGTGCGGTACTACACCGGAGATCTAGCCCGTTTCGTGTCA
GAGGAGCGCAACAAAATCGATTTGTTGGGACGTGATTTGAAATCTGTGCA
GCATCAGATTGGAAGCAGAACAGTGAGTTGGGACGAGATTGAAGAGTACG
TTAGACCCACACTTGGCCAGTTTTTTGGGGGGCTCTGTCTCTACCAGATT
TGGATTCACAACATCCCTAATGATAAGCTCCGCATTACGCTACCTGTATA
CGCCAACTTTGTGTCTGAGGCGATGGAAGAAGCCTTTTCTAAGGAATTGG
TTCAAAAGCTTTGGAAACTGTTCAGGACGGACAAGGTAGTCTCTGATATC
GGCGTCAAAATGGTGCGGCGATCAGAAGAAATGTCTTGCCACATGTTCTC
CAACAAGCTGAATAGTTTTGTTATCAAACAGTAA

protein sequence of Ggra3266.t1

>Ggra3266.t1 ID=Ggra3266.t1|Name=Ggra3266.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MTKTQYVKSMDNMFSKLFYGKGSMYWSPSGGSTSSSTATRVAVPTASSEM
HIMRTNYRELCVDRDLFNSNTLAVNLLCSYNLSTSMEVQRALLQDAGATH
LGVGPNLSDDKVCDIIEQYGANMLIGGGSHIIQFTIYCLRNNRRLPTIKR
ISHGGENFGDAVAKCFSKVWHEDVGVYGMYGSSEAGIFALKRPEQLCYEI
MPDSVHLEIVDEHGNEVPTGQVGTIVVTNLVREILPQVRYYTGDLARFVS
EERNKIDLLGRDLKSVQHQIGSRTVSWDEIEEYVRPTLGQFFGGLCLYQI
WIHNIPNDKLRITLPVYANFVSEAMEEAFSKELVQKLWKLFRTDKVVSDI
GVKMVRRSEEMSCHMFSNKLNSFVIKQ*

mRNA from alignment at tig00000851_pilon:158164..159297+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3266.t1 ID=Ggra3266.t1|Name=Ggra3266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000851_pilon:158164..159297+ (Gracilaria gracilis GNS1m male)
ATGACCAAAACCCAATACGTCAAGAGCATGGATAACATGTTTTCCAAGCT
CTTCTACGGAAAGGGTTCAATGTACTGGTCTCCGTCGGGAGGCTCTACGT
CTTCGTCGACCGCGACTAGAGTGGCTGTGCCCACTGCCTCATCTGAGATG
CATATAATGAGAACAAACTACCGAGAGTTGTGCGTGGACCGGGACCTATT
CAATTCGAACACCCTGGCTGTGAACTTGCTTTGTTCGTACAACCTCAGCA
CGAGCATGGAGGTCCAACGTGCACTTCTTCAAGATGCTGGGGCAACGCAT
CTGGGAGTTGGGCCGAATCTGAGTGACGACAAAGTTTGTGATATCATCGA
ACAGTATGGGGCTAATATGTTGATTGGAGGGGGTTCGCATATCATCCAGT
TTACTATATACTGCCTTCGCAACAACCGCAGGTTGCCCACTATTAAACGC
ATCTCGCATGGGGGAGAGAATTTTGGAGACGCGGTTGCGAAGTGTTTCTC
CAAGGTGTGGCATGAAGATGTCGGTGTGTACGGTATGTATGGCAGCTCCG
AAGCGGGAATTTTCGCACTGAAGCGACCTGAGCAACTCTGTTACGAAATC
ATGCCGGACAGTGTACATCTTGAAATCGTGGATGAGCACGGAAATGAGGT
TCCGACGGGGCAAGTAGGAACAATTGTCGTTACTAACCTAGTACGAGAGA
TTCTCCCTCAGGTGCGGTACTACACCGGAGATCTAGCCCGTTTCGTGTCA
GAGGAGCGCAACAAAATCGATTTGTTGGGACGTGATTTGAAATCTGTGCA
GCATCAGATTGGAAGCAGAACAGTGAGTTGGGACGAGATTGAAGAGTACG
TTAGACCCACACTTGGCCAGTTTTTTGGGGGGCTCTGTCTCTACCAGATT
TGGATTCACAACATCCCTAATGATAAGCTCCGCATTACGCTACCTGTATA
CGCCAACTTTGTGTCTGAGGCGATGGAAGAAGCCTTTTCTAAGGAATTGG
TTCAAAAGCTTTGGAAACTGTTCAGGACGGACAAGGTAGTCTCTGATATC
GGCGTCAAAATGGTGCGGCGATCAGAAGAAATGTCTTGCCACATGTTCTC
CAACAAGCTGAATAGTTTTGTTATCAAACAGTAA

Coding sequence (CDS) from alignment at tig00000851_pilon:158164..159297+

>Ggra3266.t1 ID=Ggra3266.t1|Name=Ggra3266.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000851_pilon:158164..159297+ (Gracilaria gracilis GNS1m male)
ATGACCAAAACCCAATACGTCAAGAGCATGGATAACATGTTTTCCAAGCT
CTTCTACGGAAAGGGTTCAATGTACTGGTCTCCGTCGGGAGGCTCTACGT
CTTCGTCGACCGCGACTAGAGTGGCTGTGCCCACTGCCTCATCTGAGATG
CATATAATGAGAACAAACTACCGAGAGTTGTGCGTGGACCGGGACCTATT
CAATTCGAACACCCTGGCTGTGAACTTGCTTTGTTCGTACAACCTCAGCA
CGAGCATGGAGGTCCAACGTGCACTTCTTCAAGATGCTGGGGCAACGCAT
CTGGGAGTTGGGCCGAATCTGAGTGACGACAAAGTTTGTGATATCATCGA
ACAGTATGGGGCTAATATGTTGATTGGAGGGGGTTCGCATATCATCCAGT
TTACTATATACTGCCTTCGCAACAACCGCAGGTTGCCCACTATTAAACGC
ATCTCGCATGGGGGAGAGAATTTTGGAGACGCGGTTGCGAAGTGTTTCTC
CAAGGTGTGGCATGAAGATGTCGGTGTGTACGGTATGTATGGCAGCTCCG
AAGCGGGAATTTTCGCACTGAAGCGACCTGAGCAACTCTGTTACGAAATC
ATGCCGGACAGTGTACATCTTGAAATCGTGGATGAGCACGGAAATGAGGT
TCCGACGGGGCAAGTAGGAACAATTGTCGTTACTAACCTAGTACGAGAGA
TTCTCCCTCAGGTGCGGTACTACACCGGAGATCTAGCCCGTTTCGTGTCA
GAGGAGCGCAACAAAATCGATTTGTTGGGACGTGATTTGAAATCTGTGCA
GCATCAGATTGGAAGCAGAACAGTGAGTTGGGACGAGATTGAAGAGTACG
TTAGACCCACACTTGGCCAGTTTTTTGGGGGGCTCTGTCTCTACCAGATT
TGGATTCACAACATCCCTAATGATAAGCTCCGCATTACGCTACCTGTATA
CGCCAACTTTGTGTCTGAGGCGATGGAAGAAGCCTTTTCTAAGGAATTGG
TTCAAAAGCTTTGGAAACTGTTCAGGACGGACAAGGTAGTCTCTGATATC
GGCGTCAAAATGGTGCGGCGATCAGAAGAAATGTCTTGCCACATGTTCTC
CAACAAGCTGAATAGTTTTGTTATCAAACAGTAA