Ggra3271.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3271.t1
Unique Name	Ggra3271.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	654

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000851_pilon	contig	tig00000851_pilon:182048..184009 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1347393.HG726020_gene959
PFAMs	Pyridoxal_deC
Max annot lvl	976\|Bacteroidetes
KEGG rclass	RC00299
KEGG ko	ko:K01593
KEGG Reaction	R00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathway	ko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG Module	M00037,M00042
Evalue	2.7e-176
EggNOG OGs	COG0076@1\|root,COG0076@2\|Bacteria,4PIBD@976\|Bacteroidetes,2FVKM@200643\|Bacteroidia
EC	4.1.1.105,4.1.1.28
Description	Pyridoxal-dependent decarboxylase conserved domain
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3271	Ggra3271	Gracilaria gracilis GNS1m male	gene	tig00000851_pilon 182048..184009 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3271.t1.start1	Ggra3271.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000851_pilon 182048..182050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3271.t1.CDS1	Ggra3271.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000851_pilon 182048..184009 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3271.t1.exon1	Ggra3271.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000851_pilon 182048..184009 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3271.t1.stop1	Ggra3271.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000851_pilon 184007..184009 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3271.t1	Ggra3271.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000851_pilon 182048..184009 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000851_pilon:182048..184009+
coding sequence from alignment at tig00000851_pilon:182048..184009+

mRNA sequence

>Ggra3271.t1 ID=Ggra3271.t1|Name=Ggra3271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp
MTKLNAEPAQAPTAEYYLSLFKPNGRVRRNAPKWLKTRQIMTSSFFPSPY
HSHSDPFRSEVSAALAQLEAMKQTKGGPAYLGTEYELPDYSEVNQAEIPP
TVSSLQDVVSDMLELFEGMINTAHPLSQPNVLPPANKASIIATLFANYFS
QNFIEGEYAWNLEKAEMETAAMIANLIPGWDTEKAGGLFTYGGSGCYLYG
IKYALTHVMQKNNSRCHGVRVDGKILVSQQGHYAMMNSTDWLGIGMDNIV
TIETDDDTNAMDIEDLQEKLDELSQKQIPVLAVICTMGTTDAFAIDPVDE
VHKILSTFKNPDGYQRPLIYCDAVIGWSFLSFKDYDFDANVGGLSEYVRN
QIERVYKKILKIEYADAVGIDFHKTGWVPYSTSLFLAKDLVHFKSLMNRP
GAVYLNERTKYNPGLYSLEVSRSAAPALSAWATLRFFGMQGLQTTISNVL
EMSLCLRAIIATEKSMVCVNNEDTGFVTLFRVYEEHEDAEARYERELDDS
TAAGKALLKESNQLQENVANMMWWWLRTGSEIDGMYAAHTTYTSGFRTTN
YNDDMGDSSAVVYALKSYPLNVNITPATMKQMVVLVKKCREKVLNGDSSK
LDTPSICKPYSEEVPDVVCGSAEAHRTRVSDMLSGVVGSRTNMGRRRRQA
GKQ*

spliced messenger RNA

>Ggra3271.t1 ID=Ggra3271.t1|Name=Ggra3271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1962bp|location=Sequence derived from alignment at tig00000851_pilon:182048..184009+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAAACTGAACGCAGAACCAGCCCAGGCACCTACCGCTGAGTACTA
CCTCAGTCTTTTCAAACCCAATGGTCGCGTTCGCCGAAACGCTCCAAAAT
GGTTGAAGACCCGTCAGATCATGACCTCTTCGTTCTTCCCCAGCCCGTAC
CACTCACACTCGGACCCCTTTCGTTCTGAAGTTAGCGCGGCTCTGGCACA
GTTAGAGGCCATGAAGCAGACGAAAGGCGGGCCAGCATACCTCGGTACAG
AATACGAGCTTCCCGATTACTCTGAAGTGAATCAAGCTGAGATCCCCCCG
ACAGTCAGTTCTCTGCAGGACGTTGTCTCGGACATGCTCGAATTGTTTGA
AGGTATGATCAACACCGCTCACCCTCTGTCGCAGCCAAACGTCTTGCCTC
CAGCAAACAAGGCGTCAATCATTGCCACGTTGTTCGCCAACTACTTCTCC
CAGAACTTCATCGAGGGAGAGTATGCGTGGAATCTCGAGAAGGCCGAGAT
GGAGACCGCCGCCATGATTGCAAACCTTATCCCGGGCTGGGACACGGAAA
AGGCAGGCGGACTGTTCACGTACGGTGGATCAGGTTGCTACTTGTATGGC
ATAAAGTATGCCCTAACTCACGTCATGCAGAAGAATAACAGTCGCTGTCA
CGGCGTTCGTGTCGACGGAAAGATTCTGGTATCACAGCAAGGGCATTATG
CAATGATGAATTCCACCGATTGGCTCGGCATCGGCATGGACAATATCGTC
ACGATTGAAACTGACGACGACACGAATGCTATGGATATCGAAGACCTGCA
AGAGAAGCTCGATGAGCTCAGCCAGAAGCAGATTCCGGTGCTGGCAGTGA
TCTGTACCATGGGCACCACCGATGCCTTCGCAATTGACCCTGTCGACGAG
GTACACAAAATCTTGAGTACCTTCAAGAACCCTGATGGATATCAGCGGCC
GCTGATCTACTGTGACGCAGTGATTGGATGGTCGTTCCTCTCTTTCAAGG
ACTATGACTTTGATGCAAACGTTGGTGGTCTCTCTGAATACGTTCGTAAC
CAAATCGAAAGGGTGTATAAGAAGATTCTTAAGATCGAATACGCCGACGC
GGTCGGCATTGACTTCCACAAGACCGGCTGGGTGCCGTACTCCACTTCCT
TATTCCTGGCAAAGGACCTGGTGCACTTCAAGTCTCTCATGAACCGTCCG
GGTGCCGTTTATCTGAACGAGCGTACCAAGTACAATCCCGGCTTATACTC
ACTGGAGGTATCACGCTCCGCAGCACCTGCACTAAGCGCGTGGGCAACGT
TGCGCTTTTTCGGGATGCAAGGCTTACAAACGACGATCTCCAACGTTCTG
GAGATGTCGCTGTGCCTGCGTGCGATCATCGCCACCGAGAAGTCGATGGT
GTGTGTGAACAACGAAGACACAGGATTCGTCACTCTGTTCCGCGTCTACG
AAGAGCACGAGGACGCCGAAGCGCGATACGAGAGGGAGTTGGATGACAGC
ACTGCTGCGGGTAAAGCGTTGCTGAAGGAGAGCAACCAGCTTCAGGAAAA
CGTGGCGAACATGATGTGGTGGTGGTTACGTACCGGCTCTGAGATTGACG
GCATGTATGCGGCGCACACGACGTACACGTCTGGTTTCCGCACCACGAAT
TATAACGATGACATGGGCGATTCGTCCGCGGTGGTTTACGCGCTCAAGTC
TTACCCGTTGAACGTGAATATCACGCCGGCCACGATGAAACAGATGGTGG
TACTGGTGAAGAAATGCCGCGAGAAGGTGCTAAACGGTGACTCTTCCAAG
CTCGACACGCCCAGTATATGCAAGCCGTACTCGGAGGAGGTGCCGGATGT
GGTGTGTGGCTCCGCTGAAGCGCATCGCACGCGCGTGAGTGATATGCTTT
CAGGAGTGGTTGGCAGTCGCACGAATATGGGTCGCCGCCGTAGACAAGCC
GGGAAGCAGTGA

protein sequence of Ggra3271.t1

>Ggra3271.t1 ID=Ggra3271.t1|Name=Ggra3271.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=654bp
MTKLNAEPAQAPTAEYYLSLFKPNGRVRRNAPKWLKTRQIMTSSFFPSPY
HSHSDPFRSEVSAALAQLEAMKQTKGGPAYLGTEYELPDYSEVNQAEIPP
TVSSLQDVVSDMLELFEGMINTAHPLSQPNVLPPANKASIIATLFANYFS
QNFIEGEYAWNLEKAEMETAAMIANLIPGWDTEKAGGLFTYGGSGCYLYG
IKYALTHVMQKNNSRCHGVRVDGKILVSQQGHYAMMNSTDWLGIGMDNIV
TIETDDDTNAMDIEDLQEKLDELSQKQIPVLAVICTMGTTDAFAIDPVDE
VHKILSTFKNPDGYQRPLIYCDAVIGWSFLSFKDYDFDANVGGLSEYVRN
QIERVYKKILKIEYADAVGIDFHKTGWVPYSTSLFLAKDLVHFKSLMNRP
GAVYLNERTKYNPGLYSLEVSRSAAPALSAWATLRFFGMQGLQTTISNVL
EMSLCLRAIIATEKSMVCVNNEDTGFVTLFRVYEEHEDAEARYERELDDS
TAAGKALLKESNQLQENVANMMWWWLRTGSEIDGMYAAHTTYTSGFRTTN
YNDDMGDSSAVVYALKSYPLNVNITPATMKQMVVLVKKCREKVLNGDSSK
LDTPSICKPYSEEVPDVVCGSAEAHRTRVSDMLSGVVGSRTNMGRRRRQA
GKQ*

mRNA from alignment at tig00000851_pilon:182048..184009+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3271.t1 ID=Ggra3271.t1|Name=Ggra3271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1962bp|location=Sequence derived from alignment at tig00000851_pilon:182048..184009+ (Gracilaria gracilis GNS1m male)
ATGACGAAACTGAACGCAGAACCAGCCCAGGCACCTACCGCTGAGTACTA
CCTCAGTCTTTTCAAACCCAATGGTCGCGTTCGCCGAAACGCTCCAAAAT
GGTTGAAGACCCGTCAGATCATGACCTCTTCGTTCTTCCCCAGCCCGTAC
CACTCACACTCGGACCCCTTTCGTTCTGAAGTTAGCGCGGCTCTGGCACA
GTTAGAGGCCATGAAGCAGACGAAAGGCGGGCCAGCATACCTCGGTACAG
AATACGAGCTTCCCGATTACTCTGAAGTGAATCAAGCTGAGATCCCCCCG
ACAGTCAGTTCTCTGCAGGACGTTGTCTCGGACATGCTCGAATTGTTTGA
AGGTATGATCAACACCGCTCACCCTCTGTCGCAGCCAAACGTCTTGCCTC
CAGCAAACAAGGCGTCAATCATTGCCACGTTGTTCGCCAACTACTTCTCC
CAGAACTTCATCGAGGGAGAGTATGCGTGGAATCTCGAGAAGGCCGAGAT
GGAGACCGCCGCCATGATTGCAAACCTTATCCCGGGCTGGGACACGGAAA
AGGCAGGCGGACTGTTCACGTACGGTGGATCAGGTTGCTACTTGTATGGC
ATAAAGTATGCCCTAACTCACGTCATGCAGAAGAATAACAGTCGCTGTCA
CGGCGTTCGTGTCGACGGAAAGATTCTGGTATCACAGCAAGGGCATTATG
CAATGATGAATTCCACCGATTGGCTCGGCATCGGCATGGACAATATCGTC
ACGATTGAAACTGACGACGACACGAATGCTATGGATATCGAAGACCTGCA
AGAGAAGCTCGATGAGCTCAGCCAGAAGCAGATTCCGGTGCTGGCAGTGA
TCTGTACCATGGGCACCACCGATGCCTTCGCAATTGACCCTGTCGACGAG
GTACACAAAATCTTGAGTACCTTCAAGAACCCTGATGGATATCAGCGGCC
GCTGATCTACTGTGACGCAGTGATTGGATGGTCGTTCCTCTCTTTCAAGG
ACTATGACTTTGATGCAAACGTTGGTGGTCTCTCTGAATACGTTCGTAAC
CAAATCGAAAGGGTGTATAAGAAGATTCTTAAGATCGAATACGCCGACGC
GGTCGGCATTGACTTCCACAAGACCGGCTGGGTGCCGTACTCCACTTCCT
TATTCCTGGCAAAGGACCTGGTGCACTTCAAGTCTCTCATGAACCGTCCG
GGTGCCGTTTATCTGAACGAGCGTACCAAGTACAATCCCGGCTTATACTC
ACTGGAGGTATCACGCTCCGCAGCACCTGCACTAAGCGCGTGGGCAACGT
TGCGCTTTTTCGGGATGCAAGGCTTACAAACGACGATCTCCAACGTTCTG
GAGATGTCGCTGTGCCTGCGTGCGATCATCGCCACCGAGAAGTCGATGGT
GTGTGTGAACAACGAAGACACAGGATTCGTCACTCTGTTCCGCGTCTACG
AAGAGCACGAGGACGCCGAAGCGCGATACGAGAGGGAGTTGGATGACAGC
ACTGCTGCGGGTAAAGCGTTGCTGAAGGAGAGCAACCAGCTTCAGGAAAA
CGTGGCGAACATGATGTGGTGGTGGTTACGTACCGGCTCTGAGATTGACG
GCATGTATGCGGCGCACACGACGTACACGTCTGGTTTCCGCACCACGAAT
TATAACGATGACATGGGCGATTCGTCCGCGGTGGTTTACGCGCTCAAGTC
TTACCCGTTGAACGTGAATATCACGCCGGCCACGATGAAACAGATGGTGG
TACTGGTGAAGAAATGCCGCGAGAAGGTGCTAAACGGTGACTCTTCCAAG
CTCGACACGCCCAGTATATGCAAGCCGTACTCGGAGGAGGTGCCGGATGT
GGTGTGTGGCTCCGCTGAAGCGCATCGCACGCGCGTGAGTGATATGCTTT
CAGGAGTGGTTGGCAGTCGCACGAATATGGGTCGCCGCCGTAGACAAGCC
GGGAAGCAGTGA

Coding sequence (CDS) from alignment at tig00000851_pilon:182048..184009+

>Ggra3271.t1 ID=Ggra3271.t1|Name=Ggra3271.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1962bp|location=Sequence derived from alignment at tig00000851_pilon:182048..184009+ (Gracilaria gracilis GNS1m male)
ATGACGAAACTGAACGCAGAACCAGCCCAGGCACCTACCGCTGAGTACTA
CCTCAGTCTTTTCAAACCCAATGGTCGCGTTCGCCGAAACGCTCCAAAAT
GGTTGAAGACCCGTCAGATCATGACCTCTTCGTTCTTCCCCAGCCCGTAC
CACTCACACTCGGACCCCTTTCGTTCTGAAGTTAGCGCGGCTCTGGCACA
GTTAGAGGCCATGAAGCAGACGAAAGGCGGGCCAGCATACCTCGGTACAG
AATACGAGCTTCCCGATTACTCTGAAGTGAATCAAGCTGAGATCCCCCCG
ACAGTCAGTTCTCTGCAGGACGTTGTCTCGGACATGCTCGAATTGTTTGA
AGGTATGATCAACACCGCTCACCCTCTGTCGCAGCCAAACGTCTTGCCTC
CAGCAAACAAGGCGTCAATCATTGCCACGTTGTTCGCCAACTACTTCTCC
CAGAACTTCATCGAGGGAGAGTATGCGTGGAATCTCGAGAAGGCCGAGAT
GGAGACCGCCGCCATGATTGCAAACCTTATCCCGGGCTGGGACACGGAAA
AGGCAGGCGGACTGTTCACGTACGGTGGATCAGGTTGCTACTTGTATGGC
ATAAAGTATGCCCTAACTCACGTCATGCAGAAGAATAACAGTCGCTGTCA
CGGCGTTCGTGTCGACGGAAAGATTCTGGTATCACAGCAAGGGCATTATG
CAATGATGAATTCCACCGATTGGCTCGGCATCGGCATGGACAATATCGTC
ACGATTGAAACTGACGACGACACGAATGCTATGGATATCGAAGACCTGCA
AGAGAAGCTCGATGAGCTCAGCCAGAAGCAGATTCCGGTGCTGGCAGTGA
TCTGTACCATGGGCACCACCGATGCCTTCGCAATTGACCCTGTCGACGAG
GTACACAAAATCTTGAGTACCTTCAAGAACCCTGATGGATATCAGCGGCC
GCTGATCTACTGTGACGCAGTGATTGGATGGTCGTTCCTCTCTTTCAAGG
ACTATGACTTTGATGCAAACGTTGGTGGTCTCTCTGAATACGTTCGTAAC
CAAATCGAAAGGGTGTATAAGAAGATTCTTAAGATCGAATACGCCGACGC
GGTCGGCATTGACTTCCACAAGACCGGCTGGGTGCCGTACTCCACTTCCT
TATTCCTGGCAAAGGACCTGGTGCACTTCAAGTCTCTCATGAACCGTCCG
GGTGCCGTTTATCTGAACGAGCGTACCAAGTACAATCCCGGCTTATACTC
ACTGGAGGTATCACGCTCCGCAGCACCTGCACTAAGCGCGTGGGCAACGT
TGCGCTTTTTCGGGATGCAAGGCTTACAAACGACGATCTCCAACGTTCTG
GAGATGTCGCTGTGCCTGCGTGCGATCATCGCCACCGAGAAGTCGATGGT
GTGTGTGAACAACGAAGACACAGGATTCGTCACTCTGTTCCGCGTCTACG
AAGAGCACGAGGACGCCGAAGCGCGATACGAGAGGGAGTTGGATGACAGC
ACTGCTGCGGGTAAAGCGTTGCTGAAGGAGAGCAACCAGCTTCAGGAAAA
CGTGGCGAACATGATGTGGTGGTGGTTACGTACCGGCTCTGAGATTGACG
GCATGTATGCGGCGCACACGACGTACACGTCTGGTTTCCGCACCACGAAT
TATAACGATGACATGGGCGATTCGTCCGCGGTGGTTTACGCGCTCAAGTC
TTACCCGTTGAACGTGAATATCACGCCGGCCACGATGAAACAGATGGTGG
TACTGGTGAAGAAATGCCGCGAGAAGGTGCTAAACGGTGACTCTTCCAAG
CTCGACACGCCCAGTATATGCAAGCCGTACTCGGAGGAGGTGCCGGATGT
GGTGTGTGGCTCCGCTGAAGCGCATCGCACGCGCGTGAGTGATATGCTTT
CAGGAGTGGTTGGCAGTCGCACGAATATGGGTCGCCGCCGTAGACAAGCC
GGGAAGCAGTGA