Ggra2626.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2626.t1
Unique NameGgra2626.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:978835..979392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008619403.1
Preferred namestp1
PFAMsLMWPc
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01104,ko:K14394
KEGG ReactionR00548,R02135
KEGG Pathwayko00730,ko00740,ko01100,map00730,map00740,map01100
GOsGO:0003674,GO:0003824,GO:0003993,GO:0004721,GO:0004725,GO:0004726,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Evalue2.7e-50
EggNOG OGsCOG0394@1|root,KOG3217@2759|Eukaryota
EC3.1.3.2,3.1.3.48
Descriptionnon-membrane spanning protein tyrosine phosphatase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2626Ggra2626Gracilaria gracilis GNS1m malegenetig00000005_pilon 978835..979392 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2626.t1.stop1Ggra2626.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 978835..978837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2626.t1.CDS1Ggra2626.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 978835..979392 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2626.t1.exon1Ggra2626.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 978835..979392 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2626.t1.start1Ggra2626.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 979390..979392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2626.t1Ggra2626.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 978835..979392 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2626.t1 ID=Ggra2626.t1|Name=Ggra2626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=186bp
MAASSPPRGILMLCTGNICRSPAAEAVMKGVLEKRGLQTLFFVDSCGTGG
GSSNWYKENGFSYHEGDLADPRMRAAATKRGLKLESRCRPLAKEDFDKFE
VIVAMDRHNLRAIETARQYWKVDNPQAQIVLMSEFSPDETFRGKPVPDPY
WSGADGFEYALDLIEGACEGLADHLSTSSAQDTSQ*
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spliced messenger RNA

>Ggra2626.t1 ID=Ggra2626.t1|Name=Ggra2626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000005_pilon:978835..979392- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCTTCCTCCCCGCCCCGCGGCATCCTCATGCTCTGCACGGGAAA
CATTTGTCGTTCCCCGGCCGCTGAAGCGGTCATGAAGGGCGTACTGGAAA
AACGAGGGCTTCAAACATTATTCTTTGTGGACTCTTGCGGCACTGGTGGC
GGCAGTTCCAACTGGTACAAGGAGAACGGCTTTAGTTACCACGAAGGCGA
TCTTGCCGATCCGCGCATGCGCGCTGCTGCAACTAAACGCGGCCTTAAAC
TCGAGAGCCGTTGTCGTCCGCTTGCTAAAGAGGATTTCGATAAATTTGAA
GTAATCGTGGCCATGGACCGCCACAACCTCAGGGCAATCGAAACAGCTCG
CCAGTATTGGAAGGTTGATAATCCGCAAGCACAAATCGTTCTCATGAGCG
AGTTTAGTCCAGATGAAACATTTAGGGGAAAGCCAGTTCCAGATCCATAC
TGGTCGGGAGCCGATGGCTTTGAGTACGCGTTGGACTTAATTGAAGGTGC
GTGCGAGGGCCTAGCAGACCACCTTTCGACTTCTTCTGCCCAAGATACCT
CGCAATAG
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protein sequence of Ggra2626.t1

>Ggra2626.t1 ID=Ggra2626.t1|Name=Ggra2626.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=186bp
MAASSPPRGILMLCTGNICRSPAAEAVMKGVLEKRGLQTLFFVDSCGTGG
GSSNWYKENGFSYHEGDLADPRMRAAATKRGLKLESRCRPLAKEDFDKFE
VIVAMDRHNLRAIETARQYWKVDNPQAQIVLMSEFSPDETFRGKPVPDPY
WSGADGFEYALDLIEGACEGLADHLSTSSAQDTSQ*
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mRNA from alignment at tig00000005_pilon:978835..979392-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2626.t1 ID=Ggra2626.t1|Name=Ggra2626.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00000005_pilon:978835..979392- (Gracilaria gracilis GNS1m male)
ATGGCAGCTTCCTCCCCGCCCCGCGGCATCCTCATGCTCTGCACGGGAAA
CATTTGTCGTTCCCCGGCCGCTGAAGCGGTCATGAAGGGCGTACTGGAAA
AACGAGGGCTTCAAACATTATTCTTTGTGGACTCTTGCGGCACTGGTGGC
GGCAGTTCCAACTGGTACAAGGAGAACGGCTTTAGTTACCACGAAGGCGA
TCTTGCCGATCCGCGCATGCGCGCTGCTGCAACTAAACGCGGCCTTAAAC
TCGAGAGCCGTTGTCGTCCGCTTGCTAAAGAGGATTTCGATAAATTTGAA
GTAATCGTGGCCATGGACCGCCACAACCTCAGGGCAATCGAAACAGCTCG
CCAGTATTGGAAGGTTGATAATCCGCAAGCACAAATCGTTCTCATGAGCG
AGTTTAGTCCAGATGAAACATTTAGGGGAAAGCCAGTTCCAGATCCATAC
TGGTCGGGAGCCGATGGCTTTGAGTACGCGTTGGACTTAATTGAAGGTGC
GTGCGAGGGCCTAGCAGACCACCTTTCGACTTCTTCTGCCCAAGATACCT
CGCAATAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:978835..979392-

>Ggra2626.t1 ID=Ggra2626.t1|Name=Ggra2626.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00000005_pilon:978835..979392- (Gracilaria gracilis GNS1m male)
ATGGCAGCTTCCTCCCCGCCCCGCGGCATCCTCATGCTCTGCACGGGAAA
CATTTGTCGTTCCCCGGCCGCTGAAGCGGTCATGAAGGGCGTACTGGAAA
AACGAGGGCTTCAAACATTATTCTTTGTGGACTCTTGCGGCACTGGTGGC
GGCAGTTCCAACTGGTACAAGGAGAACGGCTTTAGTTACCACGAAGGCGA
TCTTGCCGATCCGCGCATGCGCGCTGCTGCAACTAAACGCGGCCTTAAAC
TCGAGAGCCGTTGTCGTCCGCTTGCTAAAGAGGATTTCGATAAATTTGAA
GTAATCGTGGCCATGGACCGCCACAACCTCAGGGCAATCGAAACAGCTCG
CCAGTATTGGAAGGTTGATAATCCGCAAGCACAAATCGTTCTCATGAGCG
AGTTTAGTCCAGATGAAACATTTAGGGGAAAGCCAGTTCCAGATCCATAC
TGGTCGGGAGCCGATGGCTTTGAGTACGCGTTGGACTTAATTGAAGGTGC
GTGCGAGGGCCTAGCAGACCACCTTTCGACTTCTTCTGCCCAAGATACCT
CGCAATAG
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