Ggra3758.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3758.t1
Unique NameGgra3758.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length540
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1334384..1336161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704866.1
PFAMsPyr_redox_2
Max annot lvl2759|Eukaryota
KEGG koko:K03885,ko:K17871
KEGG Pathwayko00190,map00190
Evalue1.24e-149
EggNOG OGsCOG1252@1|root,KOG2495@2759|Eukaryota
EC1.6.5.9,1.6.99.3
DescriptionOxidoreductase
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3758Ggra3758Gracilaria gracilis GNS1m malegenetig00000850_pilon 1334384..1336161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3758.t1Ggra3758.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1334384..1336161 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3758.t1.stop1Ggra3758.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1334384..1334386 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3758.t1.CDS1Ggra3758.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1334384..1334556 -
Ggra3758.t1.CDS2Ggra3758.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1334631..1334771 -
Ggra3758.t1.CDS3Ggra3758.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1334856..1336161 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3758.t1.exon1Ggra3758.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1334384..1334556 -
Ggra3758.t1.exon2Ggra3758.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1334631..1334771 -
Ggra3758.t1.exon3Ggra3758.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 1334856..1336161 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3758.t1.intron1Ggra3758.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1334557..1334630 -
Ggra3758.t1.intron2Ggra3758.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1334772..1334855 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3758.t1.start1Ggra3758.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1336159..1336161 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3758.t1 ID=Ggra3758.t1|Name=Ggra3758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp
MNLNHAAFLTPQPLSLRRTTAIHAPRCVPRATAKPPVRESEPASPPVSRR
ARVPLPSRPGNVQVVLDRLADTLVDARVHYARLFCRAPREATPDGPRVVV
LGSGWAAHSFVKVVDHTHCASVTVVSPRNFFFFTPLLSATAVGTVEFRSI
VEPIRKANPFVDYYEAYAVDVDVQRGVVKCEQGQREGIPSANAICFQLSY
DVLVVAVGETTTTFGVEGANKYGYFLKEISDARRLRNKILDTLEKAALPV
WNEQQRKDLLHIVVVGGGPTGCEFAGELSDFVQNDLAPRYGDELVSCIRV
SLLQSGKSLLTQFETSLQQLALNSFSGRVEVQFGARVTNVTDEEVELQDG
TRIRYGLLVWAAGNGTRPIVKTLMSKLDESADLDDVPRRKKLPVDGWLRV
IGLKNVFAVGDCAQMVDGALPSTAQVAGQQGAFLARLISKAEANSFENEE
DVPLLRDSGGKTMRPFSFLSLGIMAYLGNDRAVVQVEATPKKNVAIGGRV
AYALWRSVYAVKQVDIRNRILVLFDYFKSRVYGRDISQF*
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spliced messenger RNA

>Ggra3758.t1 ID=Ggra3758.t1|Name=Ggra3758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00000850_pilon:1334384..1336161- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCTCAATCACGCCGCCTTCCTCACCCCACAGCCGCTGTCGCTCCG
TCGCACAACCGCCATACACGCGCCGCGCTGCGTGCCTCGCGCTACCGCAA
AGCCGCCTGTGCGCGAGTCCGAGCCTGCGTCCCCGCCCGTTTCACGCAGG
GCGCGCGTACCATTGCCGTCGCGACCGGGCAATGTGCAGGTCGTGCTTGA
CCGTCTGGCCGACACTTTGGTGGATGCCCGCGTTCATTACGCCCGTCTGT
TCTGTCGCGCGCCGCGCGAGGCGACGCCAGATGGCCCGCGTGTCGTCGTA
TTGGGCTCTGGCTGGGCGGCACATTCCTTCGTCAAGGTTGTGGATCACAC
GCACTGTGCAAGCGTTACTGTTGTGTCGCCGAGGAATTTCTTCTTCTTCA
CGCCCTTGTTGAGCGCTACTGCAGTGGGTACTGTCGAGTTTCGTTCCATT
GTGGAGCCTATACGAAAAGCAAATCCGTTTGTTGATTACTACGAGGCTTA
TGCCGTTGATGTGGACGTGCAGCGAGGCGTCGTCAAGTGCGAACAGGGGC
AACGGGAGGGTATCCCTTCCGCGAATGCTATATGTTTCCAGCTGTCTTAC
GACGTGCTTGTTGTGGCTGTGGGAGAGACTACCACCACGTTTGGTGTGGA
AGGTGCCAACAAATATGGCTACTTTCTCAAGGAGATTTCCGATGCGCGCC
GCCTTCGCAACAAAATTCTGGACACCTTGGAGAAAGCTGCGTTGCCTGTC
TGGAACGAGCAGCAGCGGAAAGATTTGCTACATATTGTGGTTGTAGGTGG
TGGGCCCACGGGCTGTGAGTTTGCTGGAGAGCTGTCAGACTTTGTTCAAA
ATGACCTGGCGCCTCGATATGGAGACGAGCTCGTATCTTGCATTCGTGTG
TCGTTGTTACAGTCGGGCAAGTCTTTATTAACGCAGTTTGAAACATCGTT
GCAGCAGCTGGCTCTGAATTCGTTTTCGGGACGTGTTGAAGTGCAGTTTG
GTGCAAGAGTGACTAATGTGACAGACGAAGAAGTGGAATTGCAGGATGGT
ACCAGAATTCGATATGGATTGTTGGTGTGGGCTGCTGGTAATGGTACCAG
ACCCATTGTGAAAACGCTCATGTCGAAATTAGATGAAAGCGCTGATTTGG
ATGACGTTCCGAGGAGAAAGAAGTTGCCGGTAGACGGATGGTTGCGAGTG
ATTGGGCTTAAGAATGTGTTTGCTGTCGGGGATTGTGCTCAGATGGTTGA
CGGTGCTTTGCCTAGTACCGCTCAAGTTGCTGGACAGCAGGGCGCGTTCC
TTGCGAGACTGATCTCGAAGGCGGAAGCGAACAGCTTTGAAAACGAGGAA
GACGTACCGTTGCTGAGGGACTCGGGCGGGAAAACGATGAGGCCGTTCAG
TTTCTTGTCGTTGGGTATCATGGCATATCTTGGAAACGACCGCGCAGTTG
TTCAGGTGGAAGCTACACCAAAGAAGAATGTTGCGATTGGAGGGCGGGTG
GCTTATGCGCTGTGGCGAAGTGTGTACGCCGTGAAGCAAGTGGATATTCG
AAACCGCATTCTTGTGCTGTTTGATTACTTCAAGAGCCGGGTGTATGGGC
GTGACATCTCGCAGTTCTGA
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protein sequence of Ggra3758.t1

>Ggra3758.t1 ID=Ggra3758.t1|Name=Ggra3758.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=540bp
MNLNHAAFLTPQPLSLRRTTAIHAPRCVPRATAKPPVRESEPASPPVSRR
ARVPLPSRPGNVQVVLDRLADTLVDARVHYARLFCRAPREATPDGPRVVV
LGSGWAAHSFVKVVDHTHCASVTVVSPRNFFFFTPLLSATAVGTVEFRSI
VEPIRKANPFVDYYEAYAVDVDVQRGVVKCEQGQREGIPSANAICFQLSY
DVLVVAVGETTTTFGVEGANKYGYFLKEISDARRLRNKILDTLEKAALPV
WNEQQRKDLLHIVVVGGGPTGCEFAGELSDFVQNDLAPRYGDELVSCIRV
SLLQSGKSLLTQFETSLQQLALNSFSGRVEVQFGARVTNVTDEEVELQDG
TRIRYGLLVWAAGNGTRPIVKTLMSKLDESADLDDVPRRKKLPVDGWLRV
IGLKNVFAVGDCAQMVDGALPSTAQVAGQQGAFLARLISKAEANSFENEE
DVPLLRDSGGKTMRPFSFLSLGIMAYLGNDRAVVQVEATPKKNVAIGGRV
AYALWRSVYAVKQVDIRNRILVLFDYFKSRVYGRDISQF*
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mRNA from alignment at tig00000850_pilon:1334384..1336161-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3758.t1 ID=Ggra3758.t1|Name=Ggra3758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1778bp|location=Sequence derived from alignment at tig00000850_pilon:1334384..1336161- (Gracilaria gracilis GNS1m male)
ATGAACCTCAATCACGCCGCCTTCCTCACCCCACAGCCGCTGTCGCTCCG
TCGCACAACCGCCATACACGCGCCGCGCTGCGTGCCTCGCGCTACCGCAA
AGCCGCCTGTGCGCGAGTCCGAGCCTGCGTCCCCGCCCGTTTCACGCAGG
GCGCGCGTACCATTGCCGTCGCGACCGGGCAATGTGCAGGTCGTGCTTGA
CCGTCTGGCCGACACTTTGGTGGATGCCCGCGTTCATTACGCCCGTCTGT
TCTGTCGCGCGCCGCGCGAGGCGACGCCAGATGGCCCGCGTGTCGTCGTA
TTGGGCTCTGGCTGGGCGGCACATTCCTTCGTCAAGGTTGTGGATCACAC
GCACTGTGCAAGCGTTACTGTTGTGTCGCCGAGGAATTTCTTCTTCTTCA
CGCCCTTGTTGAGCGCTACTGCAGTGGGTACTGTCGAGTTTCGTTCCATT
GTGGAGCCTATACGAAAAGCAAATCCGTTTGTTGATTACTACGAGGCTTA
TGCCGTTGATGTGGACGTGCAGCGAGGCGTCGTCAAGTGCGAACAGGGGC
AACGGGAGGGTATCCCTTCCGCGAATGCTATATGTTTCCAGCTGTCTTAC
GACGTGCTTGTTGTGGCTGTGGGAGAGACTACCACCACGTTTGGTGTGGA
AGGTGCCAACAAATATGGCTACTTTCTCAAGGAGATTTCCGATGCGCGCC
GCCTTCGCAACAAAATTCTGGACACCTTGGAGAAAGCTGCGTTGCCTGTC
TGGAACGAGCAGCAGCGGAAAGATTTGCTACATATTGTGGTTGTAGGTGG
TGGGCCCACGGGCTGTGAGTTTGCTGGAGAGCTGTCAGACTTTGTTCAAA
ATGACCTGGCGCCTCGATATGGAGACGAGCTCGTATCTTGCATTCGTGTG
TCGTTGTTACAGTCGGGCAAGTCTTTATTAACGCAGTTTGAAACATCGTT
GCAGCAGCTGGCTCTGAATTCGTTTTCGGGACGTGTTGAAGTGCAGTTTG
GTGCAAGAGTGACTAATGTGACAGACGAAGAAGTGGAATTGCAGGATGGT
ACCAGAATTCGATATGGATTGTTGGTGTGGGCTGCTGGTAATGGTACCAG
ACCCATTGTGAAAACGCTCATGTCGAAATTAGATGAAAGCGCTGATTTGG
ATGACGTTCCGAGGAGAAAGAAGTTGCCGGTAGACGGATGGTTGCGAGTG
ATTGGGCTTAAGAATGTGTTTGCTGTCGGGGATTGTGCTCAGATGGTTGA
CGGTGCTTTGCCTAGTACCGCTCAAGTTGCTGGACAGCAGGGCGCGTTCC
TTGCGAGTAAGTTATTGTGGGTTTGATATTGTGCGACACGGCGATTGACT
GACTGATACTAACGAGTTTTGTATGTGGTTACCCTGACAGGACTGATCTC
GAAGGCGGAAGCGAACAGCTTTGAAAACGAGGAAGACGTACCGTTGCTGA
GGGACTCGGGCGGGAAAACGATGAGGCCGTTCAGTTTCTTGTCGTTGGGT
ATCATGGCATATCTTGGAAACGACCGCGCAGGTATGTTTTGAGAGCGGTG
CGTTTTGCGACGGCGATGATAGCTGCTGACATGATTTGTTGTTTGAGCGG
TGCAGTTGTTCAGGTGGAAGCTACACCAAAGAAGAATGTTGCGATTGGAG
GGCGGGTGGCTTATGCGCTGTGGCGAAGTGTGTACGCCGTGAAGCAAGTG
GATATTCGAAACCGCATTCTTGTGCTGTTTGATTACTTCAAGAGCCGGGT
GTATGGGCGTGACATCTCGCAGTTCTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1334384..1336161-

>Ggra3758.t1 ID=Ggra3758.t1|Name=Ggra3758.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1620bp|location=Sequence derived from alignment at tig00000850_pilon:1334384..1336161- (Gracilaria gracilis GNS1m male)
ATGAACCTCAATCACGCCGCCTTCCTCACCCCACAGCCGCTGTCGCTCCG
TCGCACAACCGCCATACACGCGCCGCGCTGCGTGCCTCGCGCTACCGCAA
AGCCGCCTGTGCGCGAGTCCGAGCCTGCGTCCCCGCCCGTTTCACGCAGG
GCGCGCGTACCATTGCCGTCGCGACCGGGCAATGTGCAGGTCGTGCTTGA
CCGTCTGGCCGACACTTTGGTGGATGCCCGCGTTCATTACGCCCGTCTGT
TCTGTCGCGCGCCGCGCGAGGCGACGCCAGATGGCCCGCGTGTCGTCGTA
TTGGGCTCTGGCTGGGCGGCACATTCCTTCGTCAAGGTTGTGGATCACAC
GCACTGTGCAAGCGTTACTGTTGTGTCGCCGAGGAATTTCTTCTTCTTCA
CGCCCTTGTTGAGCGCTACTGCAGTGGGTACTGTCGAGTTTCGTTCCATT
GTGGAGCCTATACGAAAAGCAAATCCGTTTGTTGATTACTACGAGGCTTA
TGCCGTTGATGTGGACGTGCAGCGAGGCGTCGTCAAGTGCGAACAGGGGC
AACGGGAGGGTATCCCTTCCGCGAATGCTATATGTTTCCAGCTGTCTTAC
GACGTGCTTGTTGTGGCTGTGGGAGAGACTACCACCACGTTTGGTGTGGA
AGGTGCCAACAAATATGGCTACTTTCTCAAGGAGATTTCCGATGCGCGCC
GCCTTCGCAACAAAATTCTGGACACCTTGGAGAAAGCTGCGTTGCCTGTC
TGGAACGAGCAGCAGCGGAAAGATTTGCTACATATTGTGGTTGTAGGTGG
TGGGCCCACGGGCTGTGAGTTTGCTGGAGAGCTGTCAGACTTTGTTCAAA
ATGACCTGGCGCCTCGATATGGAGACGAGCTCGTATCTTGCATTCGTGTG
TCGTTGTTACAGTCGGGCAAGTCTTTATTAACGCAGTTTGAAACATCGTT
GCAGCAGCTGGCTCTGAATTCGTTTTCGGGACGTGTTGAAGTGCAGTTTG
GTGCAAGAGTGACTAATGTGACAGACGAAGAAGTGGAATTGCAGGATGGT
ACCAGAATTCGATATGGATTGTTGGTGTGGGCTGCTGGTAATGGTACCAG
ACCCATTGTGAAAACGCTCATGTCGAAATTAGATGAAAGCGCTGATTTGG
ATGACGTTCCGAGGAGAAAGAAGTTGCCGGTAGACGGATGGTTGCGAGTG
ATTGGGCTTAAGAATGTGTTTGCTGTCGGGGATTGTGCTCAGATGGTTGA
CGGTGCTTTGCCTAGTACCGCTCAAGTTGCTGGACAGCAGGGCGCGTTCC
TTGCGAGACTGATCTCGAAGGCGGAAGCGAACAGCTTTGAAAACGAGGAA
GACGTACCGTTGCTGAGGGACTCGGGCGGGAAAACGATGAGGCCGTTCAG
TTTCTTGTCGTTGGGTATCATGGCATATCTTGGAAACGACCGCGCAGTTG
TTCAGGTGGAAGCTACACCAAAGAAGAATGTTGCGATTGGAGGGCGGGTG
GCTTATGCGCTGTGGCGAAGTGTGTACGCCGTGAAGCAAGTGGATATTCG
AAACCGCATTCTTGTGCTGTTTGATTACTTCAAGAGCCGGGTGTATGGGC
GTGACATCTCGCAGTTCTGA
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