Ggra10293.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10293.t1
Unique NameGgra10293.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length425
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:402900..404279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10293Ggra10293Gracilaria gracilis GNS1m malegenetig00000016_pilon 402900..404279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10293.t1Ggra10293.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 402900..404279 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10293.t1.start1Ggra10293.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 402900..402902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10293.t1.CDS1Ggra10293.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 402900..403013 +
Ggra10293.t1.CDS2Ggra10293.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 403119..404279 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10293.t1.exon1Ggra10293.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 402900..403013 +
Ggra10293.t1.exon2Ggra10293.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 403119..404279 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10293.t1.intron1Ggra10293.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 403014..403118 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10293.t1.stop1Ggra10293.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 404277..404279 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10293.t1 ID=Ggra10293.t1|Name=Ggra10293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=425bp
MFSLCVNPAPPSDASSHSLRHQSLPRVFRDALRWRHHSRPPTRSLFPNAP
KSTYVHTSYSDASHPYPRSPSTSATSLSSCTDRDDPQSAPTPTCAAPCAA
PPSPSRPAKYHVPQLEERWLLCSSDSIPTIISAEPLSDRGATSASDSPRS
PRSVLRLFSKLPDVRDAPEVLRSDTHNSDPQPPSPQQQSAHGASLLLECA
HHLSPPPSESEMPISAALAPDDHHHHQLNFTVPIVAAYPEDRQEKRSNAI
SLFGMFAPAGLPHGDHQTQANAIAILAAYAENDQDEEDAMADMDLSAVDN
SPPLHAQTDAPLPVMHMDAESCKWVGNEQHFAQFDSIVAAVRDDPEPALR
DAVFDVGEQLLQQWSEDGQRHNRQFANGFQDSGAADIRDVMNIFTEAQAP
SSQQQEQWRAAPAVQPSSSRSPFP*
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spliced messenger RNA

>Ggra10293.t1 ID=Ggra10293.t1|Name=Ggra10293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000016_pilon:402900..404279+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCCCTCTGCGTCAATCCGGCCCCGCCGTCCGACGCGTCGTCGCA
CTCGCTGCGACATCAGTCACTGCCGCGCGTCTTTCGCGACGCGCTGCGAT
GGCGACACCATTccCGCCCACCCACGCGCTCGCTCTTCCCCAACGCCCCC
AAGTCCACGTACGTGCACACCAGCTACAGCGATGCTTCCCACCCGTACCC
GCGCTCCCCTTCCACTTCAGCCACCTCTCTGTCCTCGTGCACCGATCGCG
ACGACCCCCAATCTGCACCTACCCCGACGTGCGCCGCCCCATGCGCGGCG
CCGCCCTCTCCCTCGCGCCCTGCCAAATACCACGTGCCGCAGCTTGAGGA
ACGATGGCTGTTGTGTTCGTCCGACTCCATCCCCACCATCATCTCGGCGG
AGCCTCTTTCGGACCGTGGCGCAACCTCTGCTTCCGACAGTCCGCGCTCG
CCACGCTCCGTGCTGCGACTGTTCAGCAAGCTCCCCGACGTGCGTGATGC
CCCCGAAGTGCTTCGATCCGACACCCATAATTCGGACCCGCAGCCGCCTT
CGCCCCAACAACAGTCAGCGCACGGCGCATCGTTACTACTGGAATGCGCC
CATCACCTTTCTCCGCCCCCATCCGAGTCAGAGATGCCGATTAGCGCTGC
GCTCGCGCCCGATGACCACCACCACCACCAACTCAACTTCACCGTGCCCA
TCGTCGCAGCTTATCCAGAAGATAGGCAAGAGAAGCGCTCCAACGCTATC
TCTTTGTTTGGTATGTTTGCGCCCGCCGGTCTGCCGCACGGCGACCATCA
GACGCAGGCCAACGCTATTGCTATCCTGGCGGCGTACGCGGAGAATGACC
AGGACGAGGAGGACGCCATGGCCGACATGGACCTTTCTGCCGTCGACAAC
TCGCCACCCTTGCACGCGCAAACCGATGCACCGCTACCTGTCATGCATAT
GGACGCCGAAAGTTGCAAATGGGTGGGCAATGAGCAACACTTTGCCCAGT
TTGACAGTATTGTTGCCGCCGTACGCGATGACCCAGAACCAGCGCTGCGC
GACGCCGTGTTTGACGTGGGCGAGCAACTTTTGCAACAATGGAGTGAAGA
TGGCCAACGGCATAATCGCCAGTTCGCAAACGGCTTCCAAGATAGTGGTG
CGGCAGATATACGGGACGTGATGAACATTTTCACCGAGGCGCAAGCTCCG
TCGTCGCAGCAACAAGAGCAATGGAGAGCAGCGCCCGCTGTACAACCAAG
CTCTTCTCGCAGTCCATTCCCTTGA
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protein sequence of Ggra10293.t1

>Ggra10293.t1 ID=Ggra10293.t1|Name=Ggra10293.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=425bp
MFSLCVNPAPPSDASSHSLRHQSLPRVFRDALRWRHHSRPPTRSLFPNAP
KSTYVHTSYSDASHPYPRSPSTSATSLSSCTDRDDPQSAPTPTCAAPCAA
PPSPSRPAKYHVPQLEERWLLCSSDSIPTIISAEPLSDRGATSASDSPRS
PRSVLRLFSKLPDVRDAPEVLRSDTHNSDPQPPSPQQQSAHGASLLLECA
HHLSPPPSESEMPISAALAPDDHHHHQLNFTVPIVAAYPEDRQEKRSNAI
SLFGMFAPAGLPHGDHQTQANAIAILAAYAENDQDEEDAMADMDLSAVDN
SPPLHAQTDAPLPVMHMDAESCKWVGNEQHFAQFDSIVAAVRDDPEPALR
DAVFDVGEQLLQQWSEDGQRHNRQFANGFQDSGAADIRDVMNIFTEAQAP
SSQQQEQWRAAPAVQPSSSRSPFP*
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mRNA from alignment at tig00000016_pilon:402900..404279+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10293.t1 ID=Ggra10293.t1|Name=Ggra10293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000016_pilon:402900..404279+ (Gracilaria gracilis GNS1m male)
ATGTTTTCCCTCTGCGTCAATCCGGCCCCGCCGTCCGACGCGTCGTCGCA
CTCGCTGCGACATCAGTCACTGCCGCGCGTCTTTCGCGACGCGCTGCGAT
GGCGACACCATTccgtccgccgttcgctacgtcacctcgtcttccgccgc
ccccccagtccgccaccccctccgcACTCCCTCTACGCCCATCACGGCCT
CTGTCTCGCCCCCACCAAGCGCCCACCCACGCGCTCGCTCTTCCCCAACG
CCCCCAAGTCCACGTACGTGCACACCAGCTACAGCGATGCTTCCCACCCG
TACCCGCGCTCCCCTTCCACTTCAGCCACCTCTCTGTCCTCGTGCACCGA
TCGCGACGACCCCCAATCTGCACCTACCCCGACGTGCGCCGCCCCATGCG
CGGCGCCGCCCTCTCCCTCGCGCCCTGCCAAATACCACGTGCCGCAGCTT
GAGGAACGATGGCTGTTGTGTTCGTCCGACTCCATCCCCACCATCATCTC
GGCGGAGCCTCTTTCGGACCGTGGCGCAACCTCTGCTTCCGACAGTCCGC
GCTCGCCACGCTCCGTGCTGCGACTGTTCAGCAAGCTCCCCGACGTGCGT
GATGCCCCCGAAGTGCTTCGATCCGACACCCATAATTCGGACCCGCAGCC
GCCTTCGCCCCAACAACAGTCAGCGCACGGCGCATCGTTACTACTGGAAT
GCGCCCATCACCTTTCTCCGCCCCCATCCGAGTCAGAGATGCCGATTAGC
GCTGCGCTCGCGCCCGATGACCACCACCACCACCAACTCAACTTCACCGT
GCCCATCGTCGCAGCTTATCCAGAAGATAGGCAAGAGAAGCGCTCCAACG
CTATCTCTTTGTTTGGTATGTTTGCGCCCGCCGGTCTGCCGCACGGCGAC
CATCAGACGCAGGCCAACGCTATTGCTATCCTGGCGGCGTACGCGGAGAA
TGACCAGGACGAGGAGGACGCCATGGCCGACATGGACCTTTCTGCCGTCG
ACAACTCGCCACCCTTGCACGCGCAAACCGATGCACCGCTACCTGTCATG
CATATGGACGCCGAAAGTTGCAAATGGGTGGGCAATGAGCAACACTTTGC
CCAGTTTGACAGTATTGTTGCCGCCGTACGCGATGACCCAGAACCAGCGC
TGCGCGACGCCGTGTTTGACGTGGGCGAGCAACTTTTGCAACAATGGAGT
GAAGATGGCCAACGGCATAATCGCCAGTTCGCAAACGGCTTCCAAGATAG
TGGTGCGGCAGATATACGGGACGTGATGAACATTTTCACCGAGGCGCAAG
CTCCGTCGTCGCAGCAACAAGAGCAATGGAGAGCAGCGCCCGCTGTACAA
CCAAGCTCTTCTCGCAGTCCATTCCCTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:402900..404279+

>Ggra10293.t1 ID=Ggra10293.t1|Name=Ggra10293.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1275bp|location=Sequence derived from alignment at tig00000016_pilon:402900..404279+ (Gracilaria gracilis GNS1m male)
ATGTTTTCCCTCTGCGTCAATCCGGCCCCGCCGTCCGACGCGTCGTCGCA
CTCGCTGCGACATCAGTCACTGCCGCGCGTCTTTCGCGACGCGCTGCGAT
GGCGACACCATTccCGCCCACCCACGCGCTCGCTCTTCCCCAACGCCCCC
AAGTCCACGTACGTGCACACCAGCTACAGCGATGCTTCCCACCCGTACCC
GCGCTCCCCTTCCACTTCAGCCACCTCTCTGTCCTCGTGCACCGATCGCG
ACGACCCCCAATCTGCACCTACCCCGACGTGCGCCGCCCCATGCGCGGCG
CCGCCCTCTCCCTCGCGCCCTGCCAAATACCACGTGCCGCAGCTTGAGGA
ACGATGGCTGTTGTGTTCGTCCGACTCCATCCCCACCATCATCTCGGCGG
AGCCTCTTTCGGACCGTGGCGCAACCTCTGCTTCCGACAGTCCGCGCTCG
CCACGCTCCGTGCTGCGACTGTTCAGCAAGCTCCCCGACGTGCGTGATGC
CCCCGAAGTGCTTCGATCCGACACCCATAATTCGGACCCGCAGCCGCCTT
CGCCCCAACAACAGTCAGCGCACGGCGCATCGTTACTACTGGAATGCGCC
CATCACCTTTCTCCGCCCCCATCCGAGTCAGAGATGCCGATTAGCGCTGC
GCTCGCGCCCGATGACCACCACCACCACCAACTCAACTTCACCGTGCCCA
TCGTCGCAGCTTATCCAGAAGATAGGCAAGAGAAGCGCTCCAACGCTATC
TCTTTGTTTGGTATGTTTGCGCCCGCCGGTCTGCCGCACGGCGACCATCA
GACGCAGGCCAACGCTATTGCTATCCTGGCGGCGTACGCGGAGAATGACC
AGGACGAGGAGGACGCCATGGCCGACATGGACCTTTCTGCCGTCGACAAC
TCGCCACCCTTGCACGCGCAAACCGATGCACCGCTACCTGTCATGCATAT
GGACGCCGAAAGTTGCAAATGGGTGGGCAATGAGCAACACTTTGCCCAGT
TTGACAGTATTGTTGCCGCCGTACGCGATGACCCAGAACCAGCGCTGCGC
GACGCCGTGTTTGACGTGGGCGAGCAACTTTTGCAACAATGGAGTGAAGA
TGGCCAACGGCATAATCGCCAGTTCGCAAACGGCTTCCAAGATAGTGGTG
CGGCAGATATACGGGACGTGATGAACATTTTCACCGAGGCGCAAGCTCCG
TCGTCGCAGCAACAAGAGCAATGGAGAGCAGCGCCCGCTGTACAACCAAG
CTCTTCTCGCAGTCCATTCCCTTGA
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