Ggra3701.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3701.t1
Unique NameGgra3701.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1137386..1138906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001750356.1
PFAMsPeptidase_C14
Max annot lvl33154|Opisthokonta
Evalue8.13e-63
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota,38EI0@33154|Opisthokonta
DescriptionMetacaspase
COG categoryDO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3701Ggra3701Gracilaria gracilis GNS1m malegenetig00000850_pilon 1137386..1138906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3701.t1Ggra3701.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1137386..1138906 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3701.t1.start1Ggra3701.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1137386..1137388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3701.t1.CDS1Ggra3701.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1137386..1137557 +
Ggra3701.t1.CDS2Ggra3701.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1137642..1138906 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3701.t1.exon1Ggra3701.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1137386..1137557 +
Ggra3701.t1.exon2Ggra3701.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 1137642..1138906 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3701.t1.intron1Ggra3701.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 1137558..1137641 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3701.t1.stop1Ggra3701.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1138904..1138906 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3701.t1 ID=Ggra3701.t1|Name=Ggra3701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=479bp
MFQFGDLALMIRRLFGGFVIYLRACASTLLNLVWRAPTSGKYAVIIGINY
VNNPRAALLGCCNDARAMHDLIKKKGFKEENIKMLIDDDDNYDLPNCRNV
KKALNWLCSDRKEGDVIFMHFSGHGTQIPADDDDIESDKLDEAIVLEELF
LMADDDLKQFFSKLPYGVKATVVTDCCHSGTMLDGTQIAIEGSKDDNSVT
SKKESGILLNILGGSRESHVDQSTRSLPISTICEVMSEKRGKPIQPIGSE
VNRAMAEAFGGIAGKLMMKHTLQELKKQEGRSHDPIIRMLVSVLSKKISA
SEGSSPNCDNHNALSLLTSETPRAALGSPVEDGGECGSSGGNPIPSLRGN
GDLDIQQSFSNSEDPIDTLAGFMGDIGIKAQTDLDAPRYTPLHETMTEDV
CALITGCQANETSADVRPSRGKAFGALTKTLTTVHEQNSEMSHYDLVRQV
RKELLRGGFSQNPCLECSNSRAEERFIC*
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spliced messenger RNA

>Ggra3701.t1 ID=Ggra3701.t1|Name=Ggra3701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00000850_pilon:1137386..1138906+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCAGTTTGGTGACCTTGCACTTATGATTCGTCGTTTGTTTGGTGG
CTTCGTCATCTACTTGCGCGCTTGTGCGTCTACTTTGCTTAATCTCGTTT
GGCGGGCACCGACCTCTGGAAAGTATGCTGTCATTATCGGCATCAACTAT
GTCAACAATCCCAGGGCAGCTCTCTTAGGATGCTGCAATGACGCCCGAGC
CATGCATGATCTCATAAAGAAAAAAGGGTTTAAGGAGGAAAACATCAAga
tgcttatcgatgatgatgataattatgaCCTGCCCAACTGCAGAAATGTT
AAGAAAGCATTAAACTGGCTGTGCTCGGATAGGAAGGAAGGAGATGTTAT
ATTCATGCACTTTAGCGGACATGGAACGCAGATACCTGCCGATGATGATG
ACATCGAGAGCGATAAGCTCGATGAGGCCATCGTATTAGAAGAGCTATTC
TTGATGGCTGATGATGATCTTAAGCAGTTCTTCTCAAAGCTTCCTTATGG
TGTCAAAGCCACAGTTGTAACTGATTGCTGCCATTCCGGAACTATGCTCG
ATGGAACCCAGATTGCTATTGAAGGATCCAAGGATGATAATAGTGTGACA
TCGAAAAAGGAGAGTGGTATACTTCTAAACATCCTTGGTGGAAGCAGGGA
AAGTCATGTGGATCAGTCTACCCGCTCGCTCCCTATTTCAACCATTTGTG
AGGTCATGTCTGAGAAGCGTGGGAAGCCTATCCAGCCAATTGGTTCTGAA
GTTAATAGAGCTATGGCAGAAGCCTTTGGAGGTATTGCTGGGAAACTCAT
GATGAAACACACATTGCAAGAGCTGAAGAAGCAGGAAGGCCGCTCTCATG
ATCCTATCATCAGAATGCTAGTTTCTGTCCTGTCTAAGAAAATCTCTGCT
TCGGAAGGCAGTTCCCCCAATTGTGACAATCATAATGCACTCTCGCTACT
CACAAGTGAAACGCCCAGAGCTGCACTCGGTTCGCCTGTAGAAGATGGAG
GTGAATGTGGTTCTTCCGGTGGTAATCCAATTCCTTCTCTTCGTGGTAAT
GGCGACCTTGATATTCAACAATCTTTCTCTAATTCAGAAGATCCAATCGA
TACCCTTGCTGGGTTCATGGGTGATATTGGCATCAAGGCACAGACCGATC
TCGACGCGCCGCGGTACACTCCCCTCCATGAAACGATGACAGAAGATGTG
TGCGCTCTTATCACAGGTTGTCAAGCGAATGAGACTAGTGCAGATGTGCG
ACCTTCTCGAGGAAAGGCATTCGGCGCATTGACTAAAACGCTTACAACTG
TTCATGAGCAAAATTCTGAGATGTCTCACTACGATCTTGTGCGGCAAGTA
CGCAAGGAGTTACTAAGAGGTGGATTTTCGCAGAATCCATGCTTGGAATG
CTCAAACTCACGAGCTGAAGAAAGGTTCATTTGTTAG
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protein sequence of Ggra3701.t1

>Ggra3701.t1 ID=Ggra3701.t1|Name=Ggra3701.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=479bp
MFQFGDLALMIRRLFGGFVIYLRACASTLLNLVWRAPTSGKYAVIIGINY
VNNPRAALLGCCNDARAMHDLIKKKGFKEENIKMLIDDDDNYDLPNCRNV
KKALNWLCSDRKEGDVIFMHFSGHGTQIPADDDDIESDKLDEAIVLEELF
LMADDDLKQFFSKLPYGVKATVVTDCCHSGTMLDGTQIAIEGSKDDNSVT
SKKESGILLNILGGSRESHVDQSTRSLPISTICEVMSEKRGKPIQPIGSE
VNRAMAEAFGGIAGKLMMKHTLQELKKQEGRSHDPIIRMLVSVLSKKISA
SEGSSPNCDNHNALSLLTSETPRAALGSPVEDGGECGSSGGNPIPSLRGN
GDLDIQQSFSNSEDPIDTLAGFMGDIGIKAQTDLDAPRYTPLHETMTEDV
CALITGCQANETSADVRPSRGKAFGALTKTLTTVHEQNSEMSHYDLVRQV
RKELLRGGFSQNPCLECSNSRAEERFIC*
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mRNA from alignment at tig00000850_pilon:1137386..1138906+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3701.t1 ID=Ggra3701.t1|Name=Ggra3701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000850_pilon:1137386..1138906+ (Gracilaria gracilis GNS1m male)
ATGTTTCAGTTTGGTGACCTTGCACTTATGATTCGTCGTTTGTTTGGTGG
CTTCGTCATCTACTTGCGCGCTTGTGCGTCTACTTTGCTTAATCTCGTTT
GGCGGGCACCGACCTCTGGAAAGTATGCTGTCATTATCGGCATCAACTAT
GTCAACAATCCCAGGGCAGCTCGTAAGTAGTCTTCGTTGTTTTCTTCTTC
TTCAACACAGATAATGTTTTCGCATTGTTACTAACTGTATCACTTGAGTA
CGGCAGTCTTAGGATGCTGCAATGACGCCCGAGCCATGCATGATCTCATA
AAGAAAAAAGGGTTTAAGGAGGAAAACATCAAgatgcttatcgatgatga
tgataattatgaCCTGCCCAACTGCAGAAATGTTAAGAAAGCATTAAACT
GGCTGTGCTCGGATAGGAAGGAAGGAGATGTTATATTCATGCACTTTAGC
GGACATGGAACGCAGATACCTGCCGATGATGATGACATCGAGAGCGATAA
GCTCGATGAGGCCATCGTATTAGAAGAGCTATTCTTGATGGCTGATGATG
ATCTTAAGCAGTTCTTCTCAAAGCTTCCTTATGGTGTCAAAGCCACAGTT
GTAACTGATTGCTGCCATTCCGGAACTATGCTCGATGGAACCCAGATTGC
TATTGAAGGATCCAAGGATGATAATAGTGTGACATCGAAAAAGGAGAGTG
GTATACTTCTAAACATCCTTGGTGGAAGCAGGGAAAGTCATGTGGATCAG
TCTACCCGCTCGCTCCCTATTTCAACCATTTGTGAGGTCATGTCTGAGAA
GCGTGGGAAGCCTATCCAGCCAATTGGTTCTGAAGTTAATAGAGCTATGG
CAGAAGCCTTTGGAGGTATTGCTGGGAAACTCATGATGAAACACACATTG
CAAGAGCTGAAGAAGCAGGAAGGCCGCTCTCATGATCCTATCATCAGAAT
GCTAGTTTCTGTCCTGTCTAAGAAAATCTCTGCTTCGGAAGGCAGTTCCC
CCAATTGTGACAATCATAATGCACTCTCGCTACTCACAAGTGAAACGCCC
AGAGCTGCACTCGGTTCGCCTGTAGAAGATGGAGGTGAATGTGGTTCTTC
CGGTGGTAATCCAATTCCTTCTCTTCGTGGTAATGGCGACCTTGATATTC
AACAATCTTTCTCTAATTCAGAAGATCCAATCGATACCCTTGCTGGGTTC
ATGGGTGATATTGGCATCAAGGCACAGACCGATCTCGACGCGCCGCGGTA
CACTCCCCTCCATGAAACGATGACAGAAGATGTGTGCGCTCTTATCACAG
GTTGTCAAGCGAATGAGACTAGTGCAGATGTGCGACCTTCTCGAGGAAAG
GCATTCGGCGCATTGACTAAAACGCTTACAACTGTTCATGAGCAAAATTC
TGAGATGTCTCACTACGATCTTGTGCGGCAAGTACGCAAGGAGTTACTAA
GAGGTGGATTTTCGCAGAATCCATGCTTGGAATGCTCAAACTCACGAGCT
GAAGAAAGGTTCATTTGTTAG
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Coding sequence (CDS) from alignment at tig00000850_pilon:1137386..1138906+

>Ggra3701.t1 ID=Ggra3701.t1|Name=Ggra3701.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00000850_pilon:1137386..1138906+ (Gracilaria gracilis GNS1m male)
ATGTTTCAGTTTGGTGACCTTGCACTTATGATTCGTCGTTTGTTTGGTGG
CTTCGTCATCTACTTGCGCGCTTGTGCGTCTACTTTGCTTAATCTCGTTT
GGCGGGCACCGACCTCTGGAAAGTATGCTGTCATTATCGGCATCAACTAT
GTCAACAATCCCAGGGCAGCTCTCTTAGGATGCTGCAATGACGCCCGAGC
CATGCATGATCTCATAAAGAAAAAAGGGTTTAAGGAGGAAAACATCAAga
tgcttatcgatgatgatgataattatgaCCTGCCCAACTGCAGAAATGTT
AAGAAAGCATTAAACTGGCTGTGCTCGGATAGGAAGGAAGGAGATGTTAT
ATTCATGCACTTTAGCGGACATGGAACGCAGATACCTGCCGATGATGATG
ACATCGAGAGCGATAAGCTCGATGAGGCCATCGTATTAGAAGAGCTATTC
TTGATGGCTGATGATGATCTTAAGCAGTTCTTCTCAAAGCTTCCTTATGG
TGTCAAAGCCACAGTTGTAACTGATTGCTGCCATTCCGGAACTATGCTCG
ATGGAACCCAGATTGCTATTGAAGGATCCAAGGATGATAATAGTGTGACA
TCGAAAAAGGAGAGTGGTATACTTCTAAACATCCTTGGTGGAAGCAGGGA
AAGTCATGTGGATCAGTCTACCCGCTCGCTCCCTATTTCAACCATTTGTG
AGGTCATGTCTGAGAAGCGTGGGAAGCCTATCCAGCCAATTGGTTCTGAA
GTTAATAGAGCTATGGCAGAAGCCTTTGGAGGTATTGCTGGGAAACTCAT
GATGAAACACACATTGCAAGAGCTGAAGAAGCAGGAAGGCCGCTCTCATG
ATCCTATCATCAGAATGCTAGTTTCTGTCCTGTCTAAGAAAATCTCTGCT
TCGGAAGGCAGTTCCCCCAATTGTGACAATCATAATGCACTCTCGCTACT
CACAAGTGAAACGCCCAGAGCTGCACTCGGTTCGCCTGTAGAAGATGGAG
GTGAATGTGGTTCTTCCGGTGGTAATCCAATTCCTTCTCTTCGTGGTAAT
GGCGACCTTGATATTCAACAATCTTTCTCTAATTCAGAAGATCCAATCGA
TACCCTTGCTGGGTTCATGGGTGATATTGGCATCAAGGCACAGACCGATC
TCGACGCGCCGCGGTACACTCCCCTCCATGAAACGATGACAGAAGATGTG
TGCGCTCTTATCACAGGTTGTCAAGCGAATGAGACTAGTGCAGATGTGCG
ACCTTCTCGAGGAAAGGCATTCGGCGCATTGACTAAAACGCTTACAACTG
TTCATGAGCAAAATTCTGAGATGTCTCACTACGATCTTGTGCGGCAAGTA
CGCAAGGAGTTACTAAGAGGTGGATTTTCGCAGAATCCATGCTTGGAATG
CTCAAACTCACGAGCTGAAGAAAGGTTCATTTGTTAG
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