Ggra3861.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3861.t1
Unique NameGgra3861.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2255100..2256404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR014568-PA
PFAMsLPMO_10
Max annot lvl33208|Metazoa
Evalue3.59e-16
EggNOG OGs28MU0@1|root,2QUC9@2759|Eukaryota,39XY1@33154|Opisthokonta,3BK2A@33208|Metazoa,3CZ3F@33213|Bilateria,41XB2@6656|Arthropoda
DescriptionLytic polysaccharide mono-oxygenase, cellulose-degrading
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3861Ggra3861Gracilaria gracilis GNS1m malegenetig00000850_pilon 2255100..2256404 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3861.t1.stop1Ggra3861.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2255100..2255102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3861.t1.CDS1Ggra3861.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2255100..2256404 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3861.t1.exon1Ggra3861.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2255100..2256404 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3861.t1.start1Ggra3861.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2256402..2256404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3861.t1Ggra3861.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2255100..2256404 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3861.t1 ID=Ggra3861.t1|Name=Ggra3861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=435bp
MSPAALSLCLLLAALPCAVRAHGLCTDPPQRGALNPNNKFNRGNRVWTDA
PMDLKAHFPAGDKDDAPGAAARSQLRRAGNNWVPFEPLKPGFRWRAGVCG
DRIGSEQEHMRGGRFYFNAQITKTWTQADVVTTEVNIVAHHNGFIQFHIC
DVAKCGGEISEDCFRDGHCYALRRAPDSGCDSAFDKKCAPIDRNYPLRWY
LPCATKPENSQERMGNDKMKWILPDDLVCDHCVLHWFWSAANTCNPPGVI
PFYDGPDRPKNWGQCFGQSGARGGVTRVQKPCGPTRNPEEYYQCADVRIL
PRSNRNSNAERAQPQAVSAANVRDASAGNGVLTHVQLFADGKVVQVLGSD
SVVDVSRYDRITLEAVATREISKVDFIIDGSLVWTDWTARYFLYGNKGNN
PNYWPKPIFNRKFKLRVTADEEGDAIDLQLTLRK*
back to top

spliced messenger RNA

>Ggra3861.t1 ID=Ggra3861.t1|Name=Ggra3861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000850_pilon:2255100..2256404- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCGCCGCCCTGTCGCTGTGCTTGCTGCTGGCCGCGCTGCCCTG
CGCCGTGCGCGCGCACGGCCTGTGCACGGACCCGCCGCAGAGGGGCGCGC
TCAACCCGAACAACAAGTTCAACCGCGGCAACCGCGTGTGGACCGACGCC
CCCATGGACTTGAAGGCGCACTTTCCGGCAGGTGATAAGGATGATGCGCC
GGGCGCCGCTGCTAGAAGCCAGCTGCGTCGCGCCGGTAACAACTGGGTCC
CGTTTGAGCCGCTCAAGCCGGGCTTTCGCTGGCGCGCCGGCGTGTGCGGC
GACCGCATTGGAAGCGAGCAGGAGCATATGAGAGGCGGTCGTTTCTACTT
CAACGCGCAGATCACCAAGACCTGGACGCAGGCCGATGTCGTCACCACCG
AGGTCAACATAGTCGCCCATCATAATGGCTTCATTCAGTTCCATATCTGC
GACGTCGCCAAGTGCGGCGGCGAGATCTCAGAAGATTGCTTCCGAGACGG
TCATTGCTATGCGTTGCGTCGTGCGCCGGACTCGGGCTGCGACTCGGCAT
TCGATAAGAAGTGCGCCCCTATTGATCGCAACTACCCGTTGCGTTGGTAC
TTGCCGTGCGCCACCAAGCCGGAGAACTCGCAGGAGAGGATGGGAAACGA
CAAGATGAAGTGGATTTTGCCAGATGATCTCGTGTGTGATCACTGTGTGC
TGCATTGGTTCTGGTCCGCCGCCAATACCTGTAACCCGCCCGGCGTCATT
CCCTTCTACGATGGCCCGGATCGCCCCAAAAATTGGGGCCAGTGCTTCGG
CCAGAGCGGCGCTAGGGGCGGCGTCACGCGCGTGCAGAAGCCGTGTGGCC
CTACCAGAAACCCGGAGGAGTACTATCAATGTGCTGACGTGAGGATTTTG
CCGCGCTCAAACCGTAACAGCAACGCTGAGCGCGCTCAGCCGCAGGCGGT
ATCGGCCGCCAATGTGCGCGATGCATCTGCCGGAAATGGCGTGCTTACGC
ACGTCCAATTGTTTGCCGATGGAAAGGTTGTACAAGTGCTTGGGTCGGAT
TCGGTCGTTGACGTTTCGCGCTATGATAGAATAACTTTGGAGGCTGTAGC
CACCAGGGAGATTTCGAAGGTCGACTTTATTATCGATGGAAGTTTGGTTT
GGACTGACTGGACCGCCAGATACTTCTTGTACGGCAACAAGGGTAATAAT
CCCAATTACTGGCCAAAGCCTATCTTCAATCGCAAGTTTAAGTTGAGGGT
CACTGCCGATGAAGAAGGGGATGCCATTGACTTGCAACTGACTTTGAGGA
AATGA
back to top

protein sequence of Ggra3861.t1

>Ggra3861.t1 ID=Ggra3861.t1|Name=Ggra3861.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=435bp
MSPAALSLCLLLAALPCAVRAHGLCTDPPQRGALNPNNKFNRGNRVWTDA
PMDLKAHFPAGDKDDAPGAAARSQLRRAGNNWVPFEPLKPGFRWRAGVCG
DRIGSEQEHMRGGRFYFNAQITKTWTQADVVTTEVNIVAHHNGFIQFHIC
DVAKCGGEISEDCFRDGHCYALRRAPDSGCDSAFDKKCAPIDRNYPLRWY
LPCATKPENSQERMGNDKMKWILPDDLVCDHCVLHWFWSAANTCNPPGVI
PFYDGPDRPKNWGQCFGQSGARGGVTRVQKPCGPTRNPEEYYQCADVRIL
PRSNRNSNAERAQPQAVSAANVRDASAGNGVLTHVQLFADGKVVQVLGSD
SVVDVSRYDRITLEAVATREISKVDFIIDGSLVWTDWTARYFLYGNKGNN
PNYWPKPIFNRKFKLRVTADEEGDAIDLQLTLRK*
back to top

mRNA from alignment at tig00000850_pilon:2255100..2256404-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3861.t1 ID=Ggra3861.t1|Name=Ggra3861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000850_pilon:2255100..2256404- (Gracilaria gracilis GNS1m male)
ATGTCGCCCGCCGCCCTGTCGCTGTGCTTGCTGCTGGCCGCGCTGCCCTG
CGCCGTGCGCGCGCACGGCCTGTGCACGGACCCGCCGCAGAGGGGCGCGC
TCAACCCGAACAACAAGTTCAACCGCGGCAACCGCGTGTGGACCGACGCC
CCCATGGACTTGAAGGCGCACTTTCCGGCAGGTGATAAGGATGATGCGCC
GGGCGCCGCTGCTAGAAGCCAGCTGCGTCGCGCCGGTAACAACTGGGTCC
CGTTTGAGCCGCTCAAGCCGGGCTTTCGCTGGCGCGCCGGCGTGTGCGGC
GACCGCATTGGAAGCGAGCAGGAGCATATGAGAGGCGGTCGTTTCTACTT
CAACGCGCAGATCACCAAGACCTGGACGCAGGCCGATGTCGTCACCACCG
AGGTCAACATAGTCGCCCATCATAATGGCTTCATTCAGTTCCATATCTGC
GACGTCGCCAAGTGCGGCGGCGAGATCTCAGAAGATTGCTTCCGAGACGG
TCATTGCTATGCGTTGCGTCGTGCGCCGGACTCGGGCTGCGACTCGGCAT
TCGATAAGAAGTGCGCCCCTATTGATCGCAACTACCCGTTGCGTTGGTAC
TTGCCGTGCGCCACCAAGCCGGAGAACTCGCAGGAGAGGATGGGAAACGA
CAAGATGAAGTGGATTTTGCCAGATGATCTCGTGTGTGATCACTGTGTGC
TGCATTGGTTCTGGTCCGCCGCCAATACCTGTAACCCGCCCGGCGTCATT
CCCTTCTACGATGGCCCGGATCGCCCCAAAAATTGGGGCCAGTGCTTCGG
CCAGAGCGGCGCTAGGGGCGGCGTCACGCGCGTGCAGAAGCCGTGTGGCC
CTACCAGAAACCCGGAGGAGTACTATCAATGTGCTGACGTGAGGATTTTG
CCGCGCTCAAACCGTAACAGCAACGCTGAGCGCGCTCAGCCGCAGGCGGT
ATCGGCCGCCAATGTGCGCGATGCATCTGCCGGAAATGGCGTGCTTACGC
ACGTCCAATTGTTTGCCGATGGAAAGGTTGTACAAGTGCTTGGGTCGGAT
TCGGTCGTTGACGTTTCGCGCTATGATAGAATAACTTTGGAGGCTGTAGC
CACCAGGGAGATTTCGAAGGTCGACTTTATTATCGATGGAAGTTTGGTTT
GGACTGACTGGACCGCCAGATACTTCTTGTACGGCAACAAGGGTAATAAT
CCCAATTACTGGCCAAAGCCTATCTTCAATCGCAAGTTTAAGTTGAGGGT
CACTGCCGATGAAGAAGGGGATGCCATTGACTTGCAACTGACTTTGAGGA
AATGA
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:2255100..2256404-

>Ggra3861.t1 ID=Ggra3861.t1|Name=Ggra3861.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000850_pilon:2255100..2256404- (Gracilaria gracilis GNS1m male)
ATGTCGCCCGCCGCCCTGTCGCTGTGCTTGCTGCTGGCCGCGCTGCCCTG
CGCCGTGCGCGCGCACGGCCTGTGCACGGACCCGCCGCAGAGGGGCGCGC
TCAACCCGAACAACAAGTTCAACCGCGGCAACCGCGTGTGGACCGACGCC
CCCATGGACTTGAAGGCGCACTTTCCGGCAGGTGATAAGGATGATGCGCC
GGGCGCCGCTGCTAGAAGCCAGCTGCGTCGCGCCGGTAACAACTGGGTCC
CGTTTGAGCCGCTCAAGCCGGGCTTTCGCTGGCGCGCCGGCGTGTGCGGC
GACCGCATTGGAAGCGAGCAGGAGCATATGAGAGGCGGTCGTTTCTACTT
CAACGCGCAGATCACCAAGACCTGGACGCAGGCCGATGTCGTCACCACCG
AGGTCAACATAGTCGCCCATCATAATGGCTTCATTCAGTTCCATATCTGC
GACGTCGCCAAGTGCGGCGGCGAGATCTCAGAAGATTGCTTCCGAGACGG
TCATTGCTATGCGTTGCGTCGTGCGCCGGACTCGGGCTGCGACTCGGCAT
TCGATAAGAAGTGCGCCCCTATTGATCGCAACTACCCGTTGCGTTGGTAC
TTGCCGTGCGCCACCAAGCCGGAGAACTCGCAGGAGAGGATGGGAAACGA
CAAGATGAAGTGGATTTTGCCAGATGATCTCGTGTGTGATCACTGTGTGC
TGCATTGGTTCTGGTCCGCCGCCAATACCTGTAACCCGCCCGGCGTCATT
CCCTTCTACGATGGCCCGGATCGCCCCAAAAATTGGGGCCAGTGCTTCGG
CCAGAGCGGCGCTAGGGGCGGCGTCACGCGCGTGCAGAAGCCGTGTGGCC
CTACCAGAAACCCGGAGGAGTACTATCAATGTGCTGACGTGAGGATTTTG
CCGCGCTCAAACCGTAACAGCAACGCTGAGCGCGCTCAGCCGCAGGCGGT
ATCGGCCGCCAATGTGCGCGATGCATCTGCCGGAAATGGCGTGCTTACGC
ACGTCCAATTGTTTGCCGATGGAAAGGTTGTACAAGTGCTTGGGTCGGAT
TCGGTCGTTGACGTTTCGCGCTATGATAGAATAACTTTGGAGGCTGTAGC
CACCAGGGAGATTTCGAAGGTCGACTTTATTATCGATGGAAGTTTGGTTT
GGACTGACTGGACCGCCAGATACTTCTTGTACGGCAACAAGGGTAATAAT
CCCAATTACTGGCCAAAGCCTATCTTCAATCGCAAGTTTAAGTTGAGGGT
CACTGCCGATGAAGAAGGGGATGCCATTGACTTGCAACTGACTTTGAGGA
AATGA
back to top