Ggra3831.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3831.t1
Unique NameGgra3831.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2172279..2173146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3831Ggra3831Gracilaria gracilis GNS1m malegenetig00000850_pilon 2172279..2173146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3831.t1Ggra3831.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2172279..2173146 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3831.t1.start1Ggra3831.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2172279..2172281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3831.t1.CDS1Ggra3831.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2172279..2172522 +
Ggra3831.t1.CDS2Ggra3831.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2172633..2172672 +
Ggra3831.t1.CDS3Ggra3831.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2172889..2172947 +
Ggra3831.t1.CDS4Ggra3831.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2173130..2173146 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3831.t1.exon1Ggra3831.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2172279..2172522 +
Ggra3831.t1.exon2Ggra3831.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2172633..2172672 +
Ggra3831.t1.exon3Ggra3831.t1.exon3Gracilaria gracilis GNS1m maleexontig00000850_pilon 2172889..2172947 +
Ggra3831.t1.exon4Ggra3831.t1.exon4Gracilaria gracilis GNS1m maleexontig00000850_pilon 2173130..2173146 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3831.t1.intron1Ggra3831.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2172523..2172632 +
Ggra3831.t1.intron2Ggra3831.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2172673..2172888 +
Ggra3831.t1.intron3Ggra3831.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2172948..2173129 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3831.t1.stop1Ggra3831.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2173144..2173146 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3831.t1 ID=Ggra3831.t1|Name=Ggra3831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=120bp
MALSINWNMGLRTSESEVTGRDGNRIGQGLNTGTTCTTCQSCTTHCLNVC
LSVQSHRRHVVANQRRRINAKRRGSILNGDSRCSCAHIVHRLKQSSFRFR
STALSIACLCLVRRETIRI*
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spliced messenger RNA

>Ggra3831.t1 ID=Ggra3831.t1|Name=Ggra3831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00000850_pilon:2172279..2173146+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTATCTATCAACTGGAACATGGGTCTCCGAACTTCGGAATCCGA
AGTGACAGGTCGCGATGGAAACCGAATTGGTCAGGGACTCAACACTGGTA
CTACTTGTACTACTTGTCAGTCGTGTACAACACATTGCTTGAACGTCTGT
CTGTCTGTCCAGTCGCACCGAAGGCATGTCGTCGCTAATCAACGCCGTCG
GATCAACGCCAAGCGAAGGGGATCGATCCTCAATGGCGATTCCAGATGTT
CTTGTGCACACATTGTGCATCGGTTGAAACAGAGTTCATTCAGATTCAGA
AGTACCGCTCTGTCGATTGCCTGCCTCTGTCTTGTTCGAAGAGAGACCAT
TCGCATTTAA
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protein sequence of Ggra3831.t1

>Ggra3831.t1 ID=Ggra3831.t1|Name=Ggra3831.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=120bp
MALSINWNMGLRTSESEVTGRDGNRIGQGLNTGTTCTTCQSCTTHCLNVC
LSVQSHRRHVVANQRRRINAKRRGSILNGDSRCSCAHIVHRLKQSSFRFR
STALSIACLCLVRRETIRI*
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mRNA from alignment at tig00000850_pilon:2172279..2173146+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3831.t1 ID=Ggra3831.t1|Name=Ggra3831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=868bp|location=Sequence derived from alignment at tig00000850_pilon:2172279..2173146+ (Gracilaria gracilis GNS1m male)
ATGGCGTTATCTATCAACTGGAACATGGGTCTCCGAACTTCGGAATCCGA
AGTGACAGGTCGCGATGGAAACCGAATTGGTCAGGGACTCAACACTGGTA
CTACTTGTACTACTTGTCAGTCGTGTACAACACATTGCTTGAACGTCTGT
CTGTCTGTCCAGTCGCACCGAAGGCATGTCGTCGCTAATCAACGCCGTCG
GATCAACGCCAAGCGAAGGGGATCGATCCTCAATGGCGATTCCAGTATGT
GAATGGATTCACCTTCCTAACGAAGAATTAGTGATGGGTTCCATGCAATG
GGGCTCTACTAAACACGCCTAACCGTAAATGTGCTTCATGAATCTGCTGT
GAAGGATGTTCTTGTGCACACATTGTGCATCGGTTGAAACAGAGGTAAGT
AACACACTTCTTGCGTAACGATCCATTTACTCTCAAGGATGTTAAACCGT
AGCCAACCCTTCGACACGAAAACATGGGAATCTCTACTTTTCCTTATACT
CTAATTTTTTACTGAGAGAGAGCCATACATGCTTTGGAATGCTCTGTGCT
TTGACGTTTTGCGTTTACTAACTTTTAACAATTACGATTCGTTGAAGATG
TGTAACATAGTTCATTCAGATTCAGAAGTACCGCTCTGTCGATTGCCTGC
CTCTGTCTTGTTCGAAGAGGTAAGCAGTGTAGCAATTCTTTCAGTCATGC
GCAGTGATGATTACAACATTAAACAGTCGTTTGATCCTAATGAAACCATC
TACCTTCTCAAGATCTGACGCGCCAATTTGACCTGAGACCCATCCGTATG
CCATGAGGGCTAACCATCCATCATTCATATGATCCTCGCAATCGCATACA
GAGACCATTCGCATTTAA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2172279..2173146+

>Ggra3831.t1 ID=Ggra3831.t1|Name=Ggra3831.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=360bp|location=Sequence derived from alignment at tig00000850_pilon:2172279..2173146+ (Gracilaria gracilis GNS1m male)
ATGGCGTTATCTATCAACTGGAACATGGGTCTCCGAACTTCGGAATCCGA
AGTGACAGGTCGCGATGGAAACCGAATTGGTCAGGGACTCAACACTGGTA
CTACTTGTACTACTTGTCAGTCGTGTACAACACATTGCTTGAACGTCTGT
CTGTCTGTCCAGTCGCACCGAAGGCATGTCGTCGCTAATCAACGCCGTCG
GATCAACGCCAAGCGAAGGGGATCGATCCTCAATGGCGATTCCAGATGTT
CTTGTGCACACATTGTGCATCGGTTGAAACAGAGTTCATTCAGATTCAGA
AGTACCGCTCTGTCGATTGCCTGCCTCTGTCTTGTTCGAAGAGAGACCAT
TCGCATTTAA
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