Ggra3844.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3844.t1
Unique NameGgra3844.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2206451..2208079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ424CT
PFAMsNTP_transf_2,PAP_RNA-bind,PAP_central
Max annot lvl2759|Eukaryota
KEGG koko:K09254,ko:K14376
KEGG Pathwayko03015,ko04014,ko04624,ko05202,ko05203,map03015,map04014,map04624,map05202,map05203
GOsGO:0000003,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008285,GO:0009653,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0022414,GO:0031123,GO:0031124,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045824,GO:0046483,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048441,GO:0048444,GO:0048446,GO:0048449,GO:0048451,GO:0048465,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0061458,GO:0065007,GO:0070013,GO:0070566,GO:0071704,GO:0080134,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1901360,GO:1905392,GO:1905393
Evalue8.05e-72
EggNOG OGsCOG5186@1|root,KOG2245@2759|Eukaryota
EC2.7.7.19
Descriptionpolynucleotide adenylyltransferase activity
COG categoryA
BRITEko00000,ko00001,ko01000,ko03000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3844Ggra3844Gracilaria gracilis GNS1m malegenetig00000850_pilon 2206451..2208079 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3844.t1.stop1Ggra3844.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2206451..2206453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3844.t1.CDS1Ggra3844.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2206451..2208079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3844.t1.exon1Ggra3844.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2206451..2208079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3844.t1.start1Ggra3844.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2208077..2208079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3844.t1Ggra3844.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2206451..2208079 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3844.t1 ID=Ggra3844.t1|Name=Ggra3844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp
MNLAQSNKLPGVAPAMKALKGSKIYSFLDRHQRSLSNEERARRTFVVSSL
NTIAQEWVRNVAHMFHIPFPERVEQLSRVLSFGSHALGVDGPGSDVDIVV
ITPIFVSRKQHFFGPQNRAHRRAKGEKYSGTCMLDMLYSTGQAEQIVALR
DAYAPVIRFLFHGVNVDMQCAPLAVSYLPFPLDILDNSLLQDVDPGTSRS
ASGVRSDQAMIRSVPNYDTFCSVLRIVKLWAKRRCIYSSLHGYLGGVSWA
ILTARICQTYEGYSGIKLLALFFKTYAAWEWAPFPLWRPVRMTFEKYDGM
WTNWDNWMPPSTYYQNPMQIICPVLPFTNTSYNVCRTTHNAIKKEIDRAC
QIMEKVTRATLTIDEGLLRLVEMYPFDHSFPLYLVIDVKATEPKDYREWQ
NFVESRIRRLTYEMEQTCNLEDIRPFPDAVKSVCPKTGERTSSFFVGLGT
AALDKNTSSPRSMLNLAIKRAVSSWESMINSWKQKKPVMRLAVRISMGVR
GPLEGNTEQNETGSGRKRKRDQFEGKGDYDMDSCCQQKQKPT*
back to top

spliced messenger RNA

>Ggra3844.t1 ID=Ggra3844.t1|Name=Ggra3844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000850_pilon:2206451..2208079- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTGGCTCAATCGAACAAACTCCCTGGGGTAGCTCCTGCTATGAA
GGCCTTAAAGGGAAGCAAAATTTACAGTTTCCTAGACCGCCATCAGAGGT
CATTGTCAAATGAAGAACGGGCACGTCGAACATTTGTGGTCAGTTCTCTG
AATACAATTGCTCAAGAGTGGGTTCGAAATGTTGCTCACATGTTTCACAT
TCCGTTTCCAGAACGTGTTGAGCAACTATCACGAGTGCTTTCATTTGGTT
CACATGCACTTGGCGTTGATGGACCTGGGTCTGACGTGGATATTGTTGTG
ATCACCCCCATATTTGTTTCTAGAAAGCAACATTTTTTCGGCCCGCAAAA
TCGAGCCCATCGTCGTGCTAAAGGTGAGAAATACTCCGGAACATGTATGC
TGGACATGTTATACAGTACCGGACAGGCCGAACAAATCGTAGCTCTTCGA
GATGCCTACGCCCCTGTGATTCGATTCCTATTCCATGGGGTGAATGTGGA
TATGCAATGTGCTCCTTTGGCCGTCTCATATCTTCCATTCCCTTTGGATA
TATTGGATAACTCTCTTCTACAGGATGTGGATCCAGGTACAAGTCGTAGT
GCTTCAGGAGTCAGAAGCGATCAAGCTATGATACGTAGCGTACCAAACTA
TGATACGTTCTGCTCCGTTCTGAGAATCGTGAAGCTTTGGGCAAAACGGC
GTTGTATCTATTCGAGTTTGCATGGTTACCTCGGTGGGGTATCTTGGGCG
ATTCTGACTGCACGAATATGCCAAACATATGAAGGTTACTCTGGGATTAA
ACTTCTAGCTCTATTCTTCAAAACCTATGCAGCCTGGGAATGGGCACCTT
TTCCTCTCTGGAGGCCTGTTCGAATGACATTTGAGAAGTATGATGGGATG
TGGACAAACTGGGACAATTGGATGCCACCGAGCACTTACTATCAGAATCC
AATGCAAATCATATGTCCTGTCCTTCCGTTCACAAACACTTCTTACAATG
TTTGTCGAACAACTCACAATGCCATAAAGAAAGAAATCGATCGCGCGTGC
CAAATTATGGAAAAAGTTACGAGAGCAACTCTAACCATTGATGAAGGGCT
TCTGAGGCTTGTAGAAATGTATCCCTTCGACCACAGCTTTCCGCTCTACC
TGGTCATTGATGTGAAAGCAACGGAACCAAAGGACTACAGAGAGTGGCAG
AATTTTGTGGAATCTAGAATACGAAGATTGACGTATGAGATGGAACAAAC
TTGTAATCTAGAAGACATCAGACCCTTCCCGGACGCAGTGAAGTCTGTCT
GTCCCAAAACAGGCGAAAGGACGAGCAGTTTCTTTGTTGGACTCGGAACC
GCAGCTTTGGACAAGAACACTTCGAGCCCCAGAAGTATGCTTAATCTTGC
CATTAAGCGAGCCGTATCTAGTTGGGAAAGTATGATAAATTCATGGAAGC
AGAAAAAGCCGGTAATGCGTTTAGCTGTGCGCATTTCGATGGGTGTAAGG
GGACCCCTTGAAGGAAACACAGAACAAAACGAGACAGGGTCTGGGAGAAA
GAGGAAACGCGATCAATTTGAGGGCAAAGGTGATTATGACATGGATTCGT
GTTGTCAGCAGAAGCAAAAGCCGACTTGA
back to top

protein sequence of Ggra3844.t1

>Ggra3844.t1 ID=Ggra3844.t1|Name=Ggra3844.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=543bp
MNLAQSNKLPGVAPAMKALKGSKIYSFLDRHQRSLSNEERARRTFVVSSL
NTIAQEWVRNVAHMFHIPFPERVEQLSRVLSFGSHALGVDGPGSDVDIVV
ITPIFVSRKQHFFGPQNRAHRRAKGEKYSGTCMLDMLYSTGQAEQIVALR
DAYAPVIRFLFHGVNVDMQCAPLAVSYLPFPLDILDNSLLQDVDPGTSRS
ASGVRSDQAMIRSVPNYDTFCSVLRIVKLWAKRRCIYSSLHGYLGGVSWA
ILTARICQTYEGYSGIKLLALFFKTYAAWEWAPFPLWRPVRMTFEKYDGM
WTNWDNWMPPSTYYQNPMQIICPVLPFTNTSYNVCRTTHNAIKKEIDRAC
QIMEKVTRATLTIDEGLLRLVEMYPFDHSFPLYLVIDVKATEPKDYREWQ
NFVESRIRRLTYEMEQTCNLEDIRPFPDAVKSVCPKTGERTSSFFVGLGT
AALDKNTSSPRSMLNLAIKRAVSSWESMINSWKQKKPVMRLAVRISMGVR
GPLEGNTEQNETGSGRKRKRDQFEGKGDYDMDSCCQQKQKPT*
back to top

mRNA from alignment at tig00000850_pilon:2206451..2208079-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3844.t1 ID=Ggra3844.t1|Name=Ggra3844.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000850_pilon:2206451..2208079- (Gracilaria gracilis GNS1m male)
ATGAACTTGGCTCAATCGAACAAACTCCCTGGGGTAGCTCCTGCTATGAA
GGCCTTAAAGGGAAGCAAAATTTACAGTTTCCTAGACCGCCATCAGAGGT
CATTGTCAAATGAAGAACGGGCACGTCGAACATTTGTGGTCAGTTCTCTG
AATACAATTGCTCAAGAGTGGGTTCGAAATGTTGCTCACATGTTTCACAT
TCCGTTTCCAGAACGTGTTGAGCAACTATCACGAGTGCTTTCATTTGGTT
CACATGCACTTGGCGTTGATGGACCTGGGTCTGACGTGGATATTGTTGTG
ATCACCCCCATATTTGTTTCTAGAAAGCAACATTTTTTCGGCCCGCAAAA
TCGAGCCCATCGTCGTGCTAAAGGTGAGAAATACTCCGGAACATGTATGC
TGGACATGTTATACAGTACCGGACAGGCCGAACAAATCGTAGCTCTTCGA
GATGCCTACGCCCCTGTGATTCGATTCCTATTCCATGGGGTGAATGTGGA
TATGCAATGTGCTCCTTTGGCCGTCTCATATCTTCCATTCCCTTTGGATA
TATTGGATAACTCTCTTCTACAGGATGTGGATCCAGGTACAAGTCGTAGT
GCTTCAGGAGTCAGAAGCGATCAAGCTATGATACGTAGCGTACCAAACTA
TGATACGTTCTGCTCCGTTCTGAGAATCGTGAAGCTTTGGGCAAAACGGC
GTTGTATCTATTCGAGTTTGCATGGTTACCTCGGTGGGGTATCTTGGGCG
ATTCTGACTGCACGAATATGCCAAACATATGAAGGTTACTCTGGGATTAA
ACTTCTAGCTCTATTCTTCAAAACCTATGCAGCCTGGGAATGGGCACCTT
TTCCTCTCTGGAGGCCTGTTCGAATGACATTTGAGAAGTATGATGGGATG
TGGACAAACTGGGACAATTGGATGCCACCGAGCACTTACTATCAGAATCC
AATGCAAATCATATGTCCTGTCCTTCCGTTCACAAACACTTCTTACAATG
TTTGTCGAACAACTCACAATGCCATAAAGAAAGAAATCGATCGCGCGTGC
CAAATTATGGAAAAAGTTACGAGAGCAACTCTAACCATTGATGAAGGGCT
TCTGAGGCTTGTAGAAATGTATCCCTTCGACCACAGCTTTCCGCTCTACC
TGGTCATTGATGTGAAAGCAACGGAACCAAAGGACTACAGAGAGTGGCAG
AATTTTGTGGAATCTAGAATACGAAGATTGACGTATGAGATGGAACAAAC
TTGTAATCTAGAAGACATCAGACCCTTCCCGGACGCAGTGAAGTCTGTCT
GTCCCAAAACAGGCGAAAGGACGAGCAGTTTCTTTGTTGGACTCGGAACC
GCAGCTTTGGACAAGAACACTTCGAGCCCCAGAAGTATGCTTAATCTTGC
CATTAAGCGAGCCGTATCTAGTTGGGAAAGTATGATAAATTCATGGAAGC
AGAAAAAGCCGGTAATGCGTTTAGCTGTGCGCATTTCGATGGGTGTAAGG
GGACCCCTTGAAGGAAACACAGAACAAAACGAGACAGGGTCTGGGAGAAA
GAGGAAACGCGATCAATTTGAGGGCAAAGGTGATTATGACATGGATTCGT
GTTGTCAGCAGAAGCAAAAGCCGACTTGA
back to top

Coding sequence (CDS) from alignment at tig00000850_pilon:2206451..2208079-

>Ggra3844.t1 ID=Ggra3844.t1|Name=Ggra3844.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000850_pilon:2206451..2208079- (Gracilaria gracilis GNS1m male)
ATGAACTTGGCTCAATCGAACAAACTCCCTGGGGTAGCTCCTGCTATGAA
GGCCTTAAAGGGAAGCAAAATTTACAGTTTCCTAGACCGCCATCAGAGGT
CATTGTCAAATGAAGAACGGGCACGTCGAACATTTGTGGTCAGTTCTCTG
AATACAATTGCTCAAGAGTGGGTTCGAAATGTTGCTCACATGTTTCACAT
TCCGTTTCCAGAACGTGTTGAGCAACTATCACGAGTGCTTTCATTTGGTT
CACATGCACTTGGCGTTGATGGACCTGGGTCTGACGTGGATATTGTTGTG
ATCACCCCCATATTTGTTTCTAGAAAGCAACATTTTTTCGGCCCGCAAAA
TCGAGCCCATCGTCGTGCTAAAGGTGAGAAATACTCCGGAACATGTATGC
TGGACATGTTATACAGTACCGGACAGGCCGAACAAATCGTAGCTCTTCGA
GATGCCTACGCCCCTGTGATTCGATTCCTATTCCATGGGGTGAATGTGGA
TATGCAATGTGCTCCTTTGGCCGTCTCATATCTTCCATTCCCTTTGGATA
TATTGGATAACTCTCTTCTACAGGATGTGGATCCAGGTACAAGTCGTAGT
GCTTCAGGAGTCAGAAGCGATCAAGCTATGATACGTAGCGTACCAAACTA
TGATACGTTCTGCTCCGTTCTGAGAATCGTGAAGCTTTGGGCAAAACGGC
GTTGTATCTATTCGAGTTTGCATGGTTACCTCGGTGGGGTATCTTGGGCG
ATTCTGACTGCACGAATATGCCAAACATATGAAGGTTACTCTGGGATTAA
ACTTCTAGCTCTATTCTTCAAAACCTATGCAGCCTGGGAATGGGCACCTT
TTCCTCTCTGGAGGCCTGTTCGAATGACATTTGAGAAGTATGATGGGATG
TGGACAAACTGGGACAATTGGATGCCACCGAGCACTTACTATCAGAATCC
AATGCAAATCATATGTCCTGTCCTTCCGTTCACAAACACTTCTTACAATG
TTTGTCGAACAACTCACAATGCCATAAAGAAAGAAATCGATCGCGCGTGC
CAAATTATGGAAAAAGTTACGAGAGCAACTCTAACCATTGATGAAGGGCT
TCTGAGGCTTGTAGAAATGTATCCCTTCGACCACAGCTTTCCGCTCTACC
TGGTCATTGATGTGAAAGCAACGGAACCAAAGGACTACAGAGAGTGGCAG
AATTTTGTGGAATCTAGAATACGAAGATTGACGTATGAGATGGAACAAAC
TTGTAATCTAGAAGACATCAGACCCTTCCCGGACGCAGTGAAGTCTGTCT
GTCCCAAAACAGGCGAAAGGACGAGCAGTTTCTTTGTTGGACTCGGAACC
GCAGCTTTGGACAAGAACACTTCGAGCCCCAGAAGTATGCTTAATCTTGC
CATTAAGCGAGCCGTATCTAGTTGGGAAAGTATGATAAATTCATGGAAGC
AGAAAAAGCCGGTAATGCGTTTAGCTGTGCGCATTTCGATGGGTGTAAGG
GGACCCCTTGAAGGAAACACAGAACAAAACGAGACAGGGTCTGGGAGAAA
GAGGAAACGCGATCAATTTGAGGGCAAAGGTGATTATGACATGGATTCGT
GTTGTCAGCAGAAGCAAAAGCCGACTTGA
back to top