Ggra10223.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10223.t1
Unique NameGgra10223.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:147998..149104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10223Ggra10223Gracilaria gracilis GNS1m malegenetig00000016_pilon 147998..149104 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10223.t1.start1Ggra10223.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 147998..148000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10223.t1.CDS1Ggra10223.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 147998..149104 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10223.t1.exon1Ggra10223.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 147998..149104 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10223.t1.stop1Ggra10223.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 149102..149104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10223.t1Ggra10223.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 147998..149104 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10223.t1 ID=Ggra10223.t1|Name=Ggra10223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=369bp
MEDQVAFLQRITNEFQQHPPYAPAHDRHIKLTALDENRVPVDNQIQAALE
DLRCLKHQLTALRSKDIFLRKLREAQSLEQMPSAQEAVGAEMRLQKKKSE
LRKQKAARASAEKRFESAVMETCLTEKRYNDTYQLAQNRVRRIKSASLTK
QLVAKMNNDEWPSVMRLFDDVAEVDKLEGADCEQLSDIFKKERVKLEAEA
NRTNLEVADLEKRLNRVEQSAGVCEREIEGVKKRFAKKERRDRQFGDVLH
EYELQKHLQQILPSIVGVRVAAVQSDGILFDINANLFVPSDGSVDRRQAT
HSLMVKRGSIGVRGTNELILSPADVEVDDLVDQPNNVVLAVVIKEVCARL
RNFMERRQLGTAALKNGR*
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spliced messenger RNA

>Ggra10223.t1 ID=Ggra10223.t1|Name=Ggra10223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000016_pilon:147998..149104+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACCAAGTCGCGTTCCTTCAACGAATCACCAACGAATTCCAACA
GCATCCACCCTACGCCCCAGCCCATGACAGGCACATCAAACTCACTGCTC
TCGACGAGAACCGAGTCCCGGTGGACAATCAGATTCAGGCAGCGCTGGAA
GACTTACGCTGTCTCAAACATCAACTCACAGCCCTACGCAGCAAGGATAT
CTTTCTCCGCAAACTGCGGGAAGCACAGTCCCTTGAACAAATGCCATCAG
CCCAAGAAGCCGTTGGTGCTGAGATGAGACTTCAGAAGAAGAAAAGCGAG
TTGCGGAAGCAGAAGGCAGCCAGAGCAAGTGCGGAGAAGCGATTTGAATC
CGCTGTCATGGAAACCTGTCTGACCGAGAAGAGATATAATGACACTTATC
AGCTCGCTCAGAATCGAGTGAGACGTATCAAGTCTGCCTCGCTTACCAAA
CAACTCGTGGCAAAGATGAATAACGATGAGTGGCCGTCCGTGATGAGATT
ATTCGACGATGTTGCGGAAGTGGATAAGCTTGAGGGCGCGGATTGTGAAC
AACTCAGTGACATTTTCAAGAAAGAACGTGTCAAACTGGAAGCAGAAGCA
AACAGAACCAATTTGGAAGTTGCTGATTTGGAAAAACGTCTTAATCGCGT
AGAGCAAAGCGCAGGTGTATGCGAAAGGGAAATTGAAGGTGTGAAGAAAC
GCTTTGCGAAAAAGGAAAGAAGAGACCGGCAGTTTGGCGACGTGCTTCAT
GAGTACGAGCTTCAGAAGCACTTGCAGCAGATACTACCATCTATTGTGGG
CGTTAGAGTTGCTGCCGTTCAATCGGATGGCATCTTGTTTGATATCAATG
CCAACTTGTTTGTTCCGTCGGATGGAAGCGTTGACAGACGTCAAGCCACA
CATTCCTTAATGGTTAAAAGGGGCAGCATAGGTGTGCGAGGCACTAACGA
GTTGATCCTATCTCCGGCTGATGTTGAAGTTGATGATTTGGTCGATCAAC
CAAACAATGTTGTTCTGGCAGTTGTGATTAAAGAAGTCTGTGCACGGCTC
CGTAACTTTATGGAGAGAAGGCAACTAGGGACAGCGGCCTTGAAAAATGG
ACGATGA
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protein sequence of Ggra10223.t1

>Ggra10223.t1 ID=Ggra10223.t1|Name=Ggra10223.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
MEDQVAFLQRITNEFQQHPPYAPAHDRHIKLTALDENRVPVDNQIQAALE
DLRCLKHQLTALRSKDIFLRKLREAQSLEQMPSAQEAVGAEMRLQKKKSE
LRKQKAARASAEKRFESAVMETCLTEKRYNDTYQLAQNRVRRIKSASLTK
QLVAKMNNDEWPSVMRLFDDVAEVDKLEGADCEQLSDIFKKERVKLEAEA
NRTNLEVADLEKRLNRVEQSAGVCEREIEGVKKRFAKKERRDRQFGDVLH
EYELQKHLQQILPSIVGVRVAAVQSDGILFDINANLFVPSDGSVDRRQAT
HSLMVKRGSIGVRGTNELILSPADVEVDDLVDQPNNVVLAVVIKEVCARL
RNFMERRQLGTAALKNGR*
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mRNA from alignment at tig00000016_pilon:147998..149104+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10223.t1 ID=Ggra10223.t1|Name=Ggra10223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000016_pilon:147998..149104+ (Gracilaria gracilis GNS1m male)
ATGGAAGACCAAGTCGCGTTCCTTCAACGAATCACCAACGAATTCCAACA
GCATCCACCCTACGCCCCAGCCCATGACAGGCACATCAAACTCACTGCTC
TCGACGAGAACCGAGTCCCGGTGGACAATCAGATTCAGGCAGCGCTGGAA
GACTTACGCTGTCTCAAACATCAACTCACAGCCCTACGCAGCAAGGATAT
CTTTCTCCGCAAACTGCGGGAAGCACAGTCCCTTGAACAAATGCCATCAG
CCCAAGAAGCCGTTGGTGCTGAGATGAGACTTCAGAAGAAGAAAAGCGAG
TTGCGGAAGCAGAAGGCAGCCAGAGCAAGTGCGGAGAAGCGATTTGAATC
CGCTGTCATGGAAACCTGTCTGACCGAGAAGAGATATAATGACACTTATC
AGCTCGCTCAGAATCGAGTGAGACGTATCAAGTCTGCCTCGCTTACCAAA
CAACTCGTGGCAAAGATGAATAACGATGAGTGGCCGTCCGTGATGAGATT
ATTCGACGATGTTGCGGAAGTGGATAAGCTTGAGGGCGCGGATTGTGAAC
AACTCAGTGACATTTTCAAGAAAGAACGTGTCAAACTGGAAGCAGAAGCA
AACAGAACCAATTTGGAAGTTGCTGATTTGGAAAAACGTCTTAATCGCGT
AGAGCAAAGCGCAGGTGTATGCGAAAGGGAAATTGAAGGTGTGAAGAAAC
GCTTTGCGAAAAAGGAAAGAAGAGACCGGCAGTTTGGCGACGTGCTTCAT
GAGTACGAGCTTCAGAAGCACTTGCAGCAGATACTACCATCTATTGTGGG
CGTTAGAGTTGCTGCCGTTCAATCGGATGGCATCTTGTTTGATATCAATG
CCAACTTGTTTGTTCCGTCGGATGGAAGCGTTGACAGACGTCAAGCCACA
CATTCCTTAATGGTTAAAAGGGGCAGCATAGGTGTGCGAGGCACTAACGA
GTTGATCCTATCTCCGGCTGATGTTGAAGTTGATGATTTGGTCGATCAAC
CAAACAATGTTGTTCTGGCAGTTGTGATTAAAGAAGTCTGTGCACGGCTC
CGTAACTTTATGGAGAGAAGGCAACTAGGGACAGCGGCCTTGAAAAATGG
ACGATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:147998..149104+

>Ggra10223.t1 ID=Ggra10223.t1|Name=Ggra10223.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000016_pilon:147998..149104+ (Gracilaria gracilis GNS1m male)
ATGGAAGACCAAGTCGCGTTCCTTCAACGAATCACCAACGAATTCCAACA
GCATCCACCCTACGCCCCAGCCCATGACAGGCACATCAAACTCACTGCTC
TCGACGAGAACCGAGTCCCGGTGGACAATCAGATTCAGGCAGCGCTGGAA
GACTTACGCTGTCTCAAACATCAACTCACAGCCCTACGCAGCAAGGATAT
CTTTCTCCGCAAACTGCGGGAAGCACAGTCCCTTGAACAAATGCCATCAG
CCCAAGAAGCCGTTGGTGCTGAGATGAGACTTCAGAAGAAGAAAAGCGAG
TTGCGGAAGCAGAAGGCAGCCAGAGCAAGTGCGGAGAAGCGATTTGAATC
CGCTGTCATGGAAACCTGTCTGACCGAGAAGAGATATAATGACACTTATC
AGCTCGCTCAGAATCGAGTGAGACGTATCAAGTCTGCCTCGCTTACCAAA
CAACTCGTGGCAAAGATGAATAACGATGAGTGGCCGTCCGTGATGAGATT
ATTCGACGATGTTGCGGAAGTGGATAAGCTTGAGGGCGCGGATTGTGAAC
AACTCAGTGACATTTTCAAGAAAGAACGTGTCAAACTGGAAGCAGAAGCA
AACAGAACCAATTTGGAAGTTGCTGATTTGGAAAAACGTCTTAATCGCGT
AGAGCAAAGCGCAGGTGTATGCGAAAGGGAAATTGAAGGTGTGAAGAAAC
GCTTTGCGAAAAAGGAAAGAAGAGACCGGCAGTTTGGCGACGTGCTTCAT
GAGTACGAGCTTCAGAAGCACTTGCAGCAGATACTACCATCTATTGTGGG
CGTTAGAGTTGCTGCCGTTCAATCGGATGGCATCTTGTTTGATATCAATG
CCAACTTGTTTGTTCCGTCGGATGGAAGCGTTGACAGACGTCAAGCCACA
CATTCCTTAATGGTTAAAAGGGGCAGCATAGGTGTGCGAGGCACTAACGA
GTTGATCCTATCTCCGGCTGATGTTGAAGTTGATGATTTGGTCGATCAAC
CAAACAATGTTGTTCTGGCAGTTGTGATTAAAGAAGTCTGTGCACGGCTC
CGTAACTTTATGGAGAGAAGGCAACTAGGGACAGCGGCCTTGAAAAATGG
ACGATGA
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