Ggra3679.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3679.t1
Unique Name	Ggra3679.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	790

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1066403..1068772 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP01359
PFAMs	Cytochrom_B561,DOMON,Kelch_3
Max annot lvl	2759\|Eukaryota
Evalue	5.92e-34
EggNOG OGs	KOG4293@1\|root,KOG4293@2759\|Eukaryota
Description	DOMON domain-containing protein
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3679	Ggra3679	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1066403..1068772 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3679.t1.stop1	Ggra3679.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1066403..1066405 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3679.t1.CDS1	Ggra3679.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1066403..1068772 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3679.t1.exon1	Ggra3679.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1066403..1068772 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3679.t1.start1	Ggra3679.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1068770..1068772 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3679.t1	Ggra3679.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1066403..1068772 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1066403..1068772-
coding sequence from alignment at tig00000850_pilon:1066403..1068772-

mRNA sequence

>Ggra3679.t1 ID=Ggra3679.t1|Name=Ggra3679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=790bp
MTITSFSTWLLISLISISDSATAQHRFSLTPLDTATPRRPSPRSDHLSVV
VNSGDGPLLIIHGGRDGHGAKSDTWTYIVARNEWGLLADDALGSNERPPP
LYGAVGGYRFVDGENTPFLYVALGTSDGARSLNTEMWVMEFRNFTWRRVT
VKGEKPEPRFGAIGSLERFSKPDGTVQPALIISHGYGRNGPLSDTYKCTF
DEKDPYRATWTRLRRPVSQYSTRNPHSLWYQANSFTANRDVVVFGGCYAS
ERTGGICPNNDVWLLEYKQEETHTGSALQSALEPSSSSLKAETVRWQIMP
RGPAPRVGAAMAQGLNSFEGAYESRLGIAVLYSGSQDTTNLPSDHIISAH
KFDGSEIDLVSTQARTWLRERVNFNGPNELEKTAFMPRKGASLDIVRNRT
EEDDLDVPNEFFLFFGGELDNGQFSNDLMRISFDPFLESDLIEGSSRYIS
RPFVHGLLMFIAWGVLMSAGAFVARYLKHPNGRPKYFLVHLLLQTLGLVL
SWVGVAVAIQGRRSASTPFLHARLGIALIIVASLQPVIASVGIVAQMRVN
PVLVLISKPDAPKLVLSRAARTCRLFHRIIAVLVLAMGWVNITLGLFLIV
VPTILWVHWLVYAIMLLVTAGWLELMRRKGSTRVITRAVSSNRASVERPS
SVLGRVMRSIRGDSTVKLRTDKESNGTAERISQSDSIKEAKAGDEIGPEA
VAAGTVARDGKYVVIEDFVESDIVRQVVEQERAQQRAEEEKEEKVAEQKR
ARENAAGHDRDQEDFDAFSMQRSISEATSMYTYRDPDAY*

spliced messenger RNA

>Ggra3679.t1 ID=Ggra3679.t1|Name=Ggra3679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2370bp|location=Sequence derived from alignment at tig00000850_pilon:1066403..1068772- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGATCACTTCGTTCTCAACTTGGCTTCTCATCTCGTTGATTTCTAT
TTCCGATTCTGCCACTGCTCAACATCGGTTTTCTCTTACGCCCCTGGACA
CTGCGACGCCGAGGCGTCCCTCTCCTCGAAGCGATCATCTTTCGGTAGTT
GTAAATTCTGGCGACGGCCCGCTGCTTATTATTCATGGTGGTAGAGATGG
GCACGGTGCAAAGTCTGACACTTGGACTTACATCGTCGCACGAAATGAGT
GGGGACTCCTCGCTGATGATGCCCTGGGATCAAATGAACGACCGCCTCCC
CTTTATGGTGCAGTTGGTGGGTACCGCTTTGTCGATGGGGAAAACACCCC
ATTTCTCTACGTTGCGTTGGGAACCAGTGACGGAGCGAGGTCATTGAATA
CGGAAATGTGGGTTATGGAATTTCGGAACTTCACGTGGCGACGAGTAACC
GTCAAAGGCGAGAAGCCAGAGCCTCGTTTCGGTGCGATTGGTAGTTTAGA
AAGGTTCAGCAAACCCGACGGAACTGTTCAACCAGCTCTCATTATCAGTC
ATGGGTACGGCAGAAATGGACCTCTAAGCGATACTTACAAATGTACATTC
GATGAAAAGGACCCGTATCGAGCCACATGGACAAGATTGCGAAGGCCTGT
TTCCCAGTATTCAACTCGAAATCCCCATTCATTGTGGTATCAAGCGAATT
CTTTCACTGCCAATCGCGACGTTGTCGTCTTCGGTGGATGTTATGCGAGT
GAAAGAACAGGAGGAATATGTCCTAATAATGATGTTTGGCTTCTCGAATA
CAAACAAGAAGAAACCCATACGGGGAGCGCTCTCCAGTCAGCCCTAGAAC
CATCTTCGAGTTCTTTGAAAGCAGAAACTGTTCGGTGGCAGATCATGCCA
AGAGGGCCAGCTCCTCGGGTGGGAGCAGCAATGGCACAGGGTCTAAACTC
TTTTGAAGGTGCTTACGAGAGCCGGTTGGGTATTGCTGTTTTGTACAGTG
GTTCTCAGGATACAACTAACTTGCCTTCAGACCATATCATCTCTGCGCAC
AAGTTTGATGGAAGTGAAATTGATCTTGTTTCTACCCAAGCGCGCACCTG
GCTGAGAGAACGAGTTAATTTCAACGGCCCTAACGAACTTGAGAAGACAG
CATTCATGCCGCGGAAGGGGGCTTCCTTGGATATCGTCAGAAATAGAACC
GAAGAAGATGATCTGGATGTACCGAATGAATTCTTTTTGTTCTTTGGCGG
AGAACTCGACAACGGACAGTTTTCTAATGACTTGATGAGAATATCGTTCG
ATCCCTTCCTGGAATCAGACTTGATTGAAGGCTCTTCACGTTATATTTCT
CGCCCCTTTGTTCATGGCTTGCTGATGTTCATCGCGTGGGGGGTATTGAT
GAGTGCGGGGGCGTTTGTTGCAAGATATCTGAAGCATCCTAATGGACGGC
CCAAATACTTCCTTGTTCATCTGCTCCTTCAAACGCTCGGACTCGTTCTA
AGCTGGGTGGGTGTTGCAGTGGCGATTCAAGGCAGAAGAAGTGCTTCAAC
TCCGTTCCTACATGCTCGATTGGGAATTGCGTTGATCATAGTCGCTTCCT
TGCAGCCTGTCATCGCTTCAGTGGGAATCGTCGCTCAAATGCGTGTTAAC
CCTGTTCTGGTATTAATTAGCAAGCCTGATGCACCCAAATTGGTTCTGAG
TCGAGCTGCCAGAACATGTCGCTTGTTCCATCGAATCATCGCGGTGCTTG
TCCTCGCGATGGGCTGGGTGAATATTACGCTCGGTTTGTTTTTAATAGTT
GTTCCCACTATTCTCTGGGTACATTGGCTGGTTTACGCGATCATGTTGCT
GGTTACAGCTGGCTGGTTAGAACTAATGAGACGAAAGGGCAGTACAAGAG
TAATCACAAGAGCAGTTTCAAGTAACAGGGCAAGTGTGGAAAGACCTTCT
TCCGTTCTCGGCAGGGTGATGAGATCTATAAGAGGGGATTCGACGGTGAA
GCTAAGGACGGATAAAGAAAGTAATGGGACGGCAGAAAGGATCTCGCAAT
CTGACAGTATAAAGGAAGCAAAGGCAGGAGACGAAATAGGACCAGAAGCG
GTCGCCGCAGGGACAGTAGCGCGTGATGGAAAATACGTGGTTATCGAGGA
TTTTGTGGAGTCGGACATTGTCCGCCAAGTTGTGGAACAAGAAAGGGCTC
AGCAACGCGCCGAAGAAGAGAAGGAAGAGAAAGTTGCGGAGCAAAAGCGA
GCTCGAGAGAACGCTGCTGGGCATGATAGAGATCAGGAAGATTTTGATGC
CTTCAGTATGCAAAGATCAATATCGGAGGCAACTTCGATGTATACCTATC
GCGATCCTGACGCGTATTAG

protein sequence of Ggra3679.t1

>Ggra3679.t1 ID=Ggra3679.t1|Name=Ggra3679.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=790bp
MTITSFSTWLLISLISISDSATAQHRFSLTPLDTATPRRPSPRSDHLSVV
VNSGDGPLLIIHGGRDGHGAKSDTWTYIVARNEWGLLADDALGSNERPPP
LYGAVGGYRFVDGENTPFLYVALGTSDGARSLNTEMWVMEFRNFTWRRVT
VKGEKPEPRFGAIGSLERFSKPDGTVQPALIISHGYGRNGPLSDTYKCTF
DEKDPYRATWTRLRRPVSQYSTRNPHSLWYQANSFTANRDVVVFGGCYAS
ERTGGICPNNDVWLLEYKQEETHTGSALQSALEPSSSSLKAETVRWQIMP
RGPAPRVGAAMAQGLNSFEGAYESRLGIAVLYSGSQDTTNLPSDHIISAH
KFDGSEIDLVSTQARTWLRERVNFNGPNELEKTAFMPRKGASLDIVRNRT
EEDDLDVPNEFFLFFGGELDNGQFSNDLMRISFDPFLESDLIEGSSRYIS
RPFVHGLLMFIAWGVLMSAGAFVARYLKHPNGRPKYFLVHLLLQTLGLVL
SWVGVAVAIQGRRSASTPFLHARLGIALIIVASLQPVIASVGIVAQMRVN
PVLVLISKPDAPKLVLSRAARTCRLFHRIIAVLVLAMGWVNITLGLFLIV
VPTILWVHWLVYAIMLLVTAGWLELMRRKGSTRVITRAVSSNRASVERPS
SVLGRVMRSIRGDSTVKLRTDKESNGTAERISQSDSIKEAKAGDEIGPEA
VAAGTVARDGKYVVIEDFVESDIVRQVVEQERAQQRAEEEKEEKVAEQKR
ARENAAGHDRDQEDFDAFSMQRSISEATSMYTYRDPDAY*

mRNA from alignment at tig00000850_pilon:1066403..1068772-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3679.t1 ID=Ggra3679.t1|Name=Ggra3679.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2370bp|location=Sequence derived from alignment at tig00000850_pilon:1066403..1068772- (Gracilaria gracilis GNS1m male)
ATGACGATCACTTCGTTCTCAACTTGGCTTCTCATCTCGTTGATTTCTAT
TTCCGATTCTGCCACTGCTCAACATCGGTTTTCTCTTACGCCCCTGGACA
CTGCGACGCCGAGGCGTCCCTCTCCTCGAAGCGATCATCTTTCGGTAGTT
GTAAATTCTGGCGACGGCCCGCTGCTTATTATTCATGGTGGTAGAGATGG
GCACGGTGCAAAGTCTGACACTTGGACTTACATCGTCGCACGAAATGAGT
GGGGACTCCTCGCTGATGATGCCCTGGGATCAAATGAACGACCGCCTCCC
CTTTATGGTGCAGTTGGTGGGTACCGCTTTGTCGATGGGGAAAACACCCC
ATTTCTCTACGTTGCGTTGGGAACCAGTGACGGAGCGAGGTCATTGAATA
CGGAAATGTGGGTTATGGAATTTCGGAACTTCACGTGGCGACGAGTAACC
GTCAAAGGCGAGAAGCCAGAGCCTCGTTTCGGTGCGATTGGTAGTTTAGA
AAGGTTCAGCAAACCCGACGGAACTGTTCAACCAGCTCTCATTATCAGTC
ATGGGTACGGCAGAAATGGACCTCTAAGCGATACTTACAAATGTACATTC
GATGAAAAGGACCCGTATCGAGCCACATGGACAAGATTGCGAAGGCCTGT
TTCCCAGTATTCAACTCGAAATCCCCATTCATTGTGGTATCAAGCGAATT
CTTTCACTGCCAATCGCGACGTTGTCGTCTTCGGTGGATGTTATGCGAGT
GAAAGAACAGGAGGAATATGTCCTAATAATGATGTTTGGCTTCTCGAATA
CAAACAAGAAGAAACCCATACGGGGAGCGCTCTCCAGTCAGCCCTAGAAC
CATCTTCGAGTTCTTTGAAAGCAGAAACTGTTCGGTGGCAGATCATGCCA
AGAGGGCCAGCTCCTCGGGTGGGAGCAGCAATGGCACAGGGTCTAAACTC
TTTTGAAGGTGCTTACGAGAGCCGGTTGGGTATTGCTGTTTTGTACAGTG
GTTCTCAGGATACAACTAACTTGCCTTCAGACCATATCATCTCTGCGCAC
AAGTTTGATGGAAGTGAAATTGATCTTGTTTCTACCCAAGCGCGCACCTG
GCTGAGAGAACGAGTTAATTTCAACGGCCCTAACGAACTTGAGAAGACAG
CATTCATGCCGCGGAAGGGGGCTTCCTTGGATATCGTCAGAAATAGAACC
GAAGAAGATGATCTGGATGTACCGAATGAATTCTTTTTGTTCTTTGGCGG
AGAACTCGACAACGGACAGTTTTCTAATGACTTGATGAGAATATCGTTCG
ATCCCTTCCTGGAATCAGACTTGATTGAAGGCTCTTCACGTTATATTTCT
CGCCCCTTTGTTCATGGCTTGCTGATGTTCATCGCGTGGGGGGTATTGAT
GAGTGCGGGGGCGTTTGTTGCAAGATATCTGAAGCATCCTAATGGACGGC
CCAAATACTTCCTTGTTCATCTGCTCCTTCAAACGCTCGGACTCGTTCTA
AGCTGGGTGGGTGTTGCAGTGGCGATTCAAGGCAGAAGAAGTGCTTCAAC
TCCGTTCCTACATGCTCGATTGGGAATTGCGTTGATCATAGTCGCTTCCT
TGCAGCCTGTCATCGCTTCAGTGGGAATCGTCGCTCAAATGCGTGTTAAC
CCTGTTCTGGTATTAATTAGCAAGCCTGATGCACCCAAATTGGTTCTGAG
TCGAGCTGCCAGAACATGTCGCTTGTTCCATCGAATCATCGCGGTGCTTG
TCCTCGCGATGGGCTGGGTGAATATTACGCTCGGTTTGTTTTTAATAGTT
GTTCCCACTATTCTCTGGGTACATTGGCTGGTTTACGCGATCATGTTGCT
GGTTACAGCTGGCTGGTTAGAACTAATGAGACGAAAGGGCAGTACAAGAG
TAATCACAAGAGCAGTTTCAAGTAACAGGGCAAGTGTGGAAAGACCTTCT
TCCGTTCTCGGCAGGGTGATGAGATCTATAAGAGGGGATTCGACGGTGAA
GCTAAGGACGGATAAAGAAAGTAATGGGACGGCAGAAAGGATCTCGCAAT
CTGACAGTATAAAGGAAGCAAAGGCAGGAGACGAAATAGGACCAGAAGCG
GTCGCCGCAGGGACAGTAGCGCGTGATGGAAAATACGTGGTTATCGAGGA
TTTTGTGGAGTCGGACATTGTCCGCCAAGTTGTGGAACAAGAAAGGGCTC
AGCAACGCGCCGAAGAAGAGAAGGAAGAGAAAGTTGCGGAGCAAAAGCGA
GCTCGAGAGAACGCTGCTGGGCATGATAGAGATCAGGAAGATTTTGATGC
CTTCAGTATGCAAAGATCAATATCGGAGGCAACTTCGATGTATACCTATC
GCGATCCTGACGCGTATTAG

Coding sequence (CDS) from alignment at tig00000850_pilon:1066403..1068772-

>Ggra3679.t1 ID=Ggra3679.t1|Name=Ggra3679.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2370bp|location=Sequence derived from alignment at tig00000850_pilon:1066403..1068772- (Gracilaria gracilis GNS1m male)
ATGACGATCACTTCGTTCTCAACTTGGCTTCTCATCTCGTTGATTTCTAT
TTCCGATTCTGCCACTGCTCAACATCGGTTTTCTCTTACGCCCCTGGACA
CTGCGACGCCGAGGCGTCCCTCTCCTCGAAGCGATCATCTTTCGGTAGTT
GTAAATTCTGGCGACGGCCCGCTGCTTATTATTCATGGTGGTAGAGATGG
GCACGGTGCAAAGTCTGACACTTGGACTTACATCGTCGCACGAAATGAGT
GGGGACTCCTCGCTGATGATGCCCTGGGATCAAATGAACGACCGCCTCCC
CTTTATGGTGCAGTTGGTGGGTACCGCTTTGTCGATGGGGAAAACACCCC
ATTTCTCTACGTTGCGTTGGGAACCAGTGACGGAGCGAGGTCATTGAATA
CGGAAATGTGGGTTATGGAATTTCGGAACTTCACGTGGCGACGAGTAACC
GTCAAAGGCGAGAAGCCAGAGCCTCGTTTCGGTGCGATTGGTAGTTTAGA
AAGGTTCAGCAAACCCGACGGAACTGTTCAACCAGCTCTCATTATCAGTC
ATGGGTACGGCAGAAATGGACCTCTAAGCGATACTTACAAATGTACATTC
GATGAAAAGGACCCGTATCGAGCCACATGGACAAGATTGCGAAGGCCTGT
TTCCCAGTATTCAACTCGAAATCCCCATTCATTGTGGTATCAAGCGAATT
CTTTCACTGCCAATCGCGACGTTGTCGTCTTCGGTGGATGTTATGCGAGT
GAAAGAACAGGAGGAATATGTCCTAATAATGATGTTTGGCTTCTCGAATA
CAAACAAGAAGAAACCCATACGGGGAGCGCTCTCCAGTCAGCCCTAGAAC
CATCTTCGAGTTCTTTGAAAGCAGAAACTGTTCGGTGGCAGATCATGCCA
AGAGGGCCAGCTCCTCGGGTGGGAGCAGCAATGGCACAGGGTCTAAACTC
TTTTGAAGGTGCTTACGAGAGCCGGTTGGGTATTGCTGTTTTGTACAGTG
GTTCTCAGGATACAACTAACTTGCCTTCAGACCATATCATCTCTGCGCAC
AAGTTTGATGGAAGTGAAATTGATCTTGTTTCTACCCAAGCGCGCACCTG
GCTGAGAGAACGAGTTAATTTCAACGGCCCTAACGAACTTGAGAAGACAG
CATTCATGCCGCGGAAGGGGGCTTCCTTGGATATCGTCAGAAATAGAACC
GAAGAAGATGATCTGGATGTACCGAATGAATTCTTTTTGTTCTTTGGCGG
AGAACTCGACAACGGACAGTTTTCTAATGACTTGATGAGAATATCGTTCG
ATCCCTTCCTGGAATCAGACTTGATTGAAGGCTCTTCACGTTATATTTCT
CGCCCCTTTGTTCATGGCTTGCTGATGTTCATCGCGTGGGGGGTATTGAT
GAGTGCGGGGGCGTTTGTTGCAAGATATCTGAAGCATCCTAATGGACGGC
CCAAATACTTCCTTGTTCATCTGCTCCTTCAAACGCTCGGACTCGTTCTA
AGCTGGGTGGGTGTTGCAGTGGCGATTCAAGGCAGAAGAAGTGCTTCAAC
TCCGTTCCTACATGCTCGATTGGGAATTGCGTTGATCATAGTCGCTTCCT
TGCAGCCTGTCATCGCTTCAGTGGGAATCGTCGCTCAAATGCGTGTTAAC
CCTGTTCTGGTATTAATTAGCAAGCCTGATGCACCCAAATTGGTTCTGAG
TCGAGCTGCCAGAACATGTCGCTTGTTCCATCGAATCATCGCGGTGCTTG
TCCTCGCGATGGGCTGGGTGAATATTACGCTCGGTTTGTTTTTAATAGTT
GTTCCCACTATTCTCTGGGTACATTGGCTGGTTTACGCGATCATGTTGCT
GGTTACAGCTGGCTGGTTAGAACTAATGAGACGAAAGGGCAGTACAAGAG
TAATCACAAGAGCAGTTTCAAGTAACAGGGCAAGTGTGGAAAGACCTTCT
TCCGTTCTCGGCAGGGTGATGAGATCTATAAGAGGGGATTCGACGGTGAA
GCTAAGGACGGATAAAGAAAGTAATGGGACGGCAGAAAGGATCTCGCAAT
CTGACAGTATAAAGGAAGCAAAGGCAGGAGACGAAATAGGACCAGAAGCG
GTCGCCGCAGGGACAGTAGCGCGTGATGGAAAATACGTGGTTATCGAGGA
TTTTGTGGAGTCGGACATTGTCCGCCAAGTTGTGGAACAAGAAAGGGCTC
AGCAACGCGCCGAAGAAGAGAAGGAAGAGAAAGTTGCGGAGCAAAAGCGA
GCTCGAGAGAACGCTGCTGGGCATGATAGAGATCAGGAAGATTTTGATGC
CTTCAGTATGCAAAGATCAATATCGGAGGCAACTTCGATGTATACCTATC
GCGATCCTGACGCGTATTAG