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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005703598.1 |
| Preferred name | PRT1 |
| PFAMs | RRM_1,eIF2A |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K03253 |
| KEGG Pathway | ko03013,map03013 |
| GOs | GO:0000003,GO:0002064,GO:0002065,GO:0002066,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0007276,GO:0007281,GO:0007292,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009277,GO:0009847,GO:0009888,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0016032,GO:0016282,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030312,GO:0030707,GO:0030855,GO:0031323,GO:0031326,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032947,GO:0032991,GO:0033290,GO:0034248,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043614,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0048468,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0065007,GO:0070887,GO:0070993,GO:0071540,GO:0071541,GO:0071704,GO:0071944,GO:0075522,GO:0075525,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112 |
| Evalue | 3.46e-199 |
| EggNOG OGs | COG5354@1|root,KOG2314@2759|Eukaryota |
| Description | Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome |
| COG category | J |
| BRITE | ko00000,ko00001,ko03012,ko03019 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3622.t1.stop1 | Ggra3622.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000850_pilon 332414..332416 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3622.t1.intron1 | Ggra3622.t1.intron1 | Gracilaria gracilis GNS1m male | intron | tig00000850_pilon 333983..334239 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra3622.t1.start1 | Ggra3622.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000850_pilon 334792..334794 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra3622.t1 ID=Ggra3622.t1|Name=Ggra3622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=708bp MPGVGPDDVIPIDSIEDDFQRKQEEMRRVAKDCVVVIDNVPKIGPEKYDK LVGKLTPMFEKSARMRRDEQDNPRLNFVRNEGGSTLGFAIAEYITPEEAY KAVASLHNFQLDRSHRFWACTAGELERLQNIPEEFVPPPPLPASLKNRPN FKSWLLDERGRDQFMIRHNHETSIYWHDHIVKPQMDYAKVMWTDAGVVWS PRGTYLATFHQRGIKLWGRVTSPDGEVDWVIVMRFEHTNVSLVHFSPCEQ YLITFNGTEPERDDKRNPRAIIIWNVLTGKKKRGFMGPPRSMIGPDGTIP WPIFQWSHDDKYFARLNENGISVYQTPDMGLVDRKSMKIPHVRGFAWSPT SNIMAYWTPEVNDSPARVTVVELPSKKEIRQNALYSVSSIVLHWQQEGKF LCCKVDRLTKSKKGQFTHFELFRVQAKDIPIEVVEYKEKDIVQAFGWEPQ GHRFAVIHGYSDKPGRTDVSFFTMEGITGELKPLFTLESRTVNQMRWSPK GRFILLAALGSPNGNLEWYDVNDATGKESPEPVGTNQHFLCNDVQWDPSG RFVSSFVTYWRNSNENGYIIWTMYGKELCRVSVDMLYQFAWRPRPPSLLS PKQRKAVKKSLKTRKEKYEREDKDLRDTVSSGKAAQRKAQRDAFYAFRNQ AKKVLEEEATLRHQAIAVYDTAGDDKETITEIVETVLSVKNEIDFSKKLL TSDDERD* back to topspliced messenger RNA >Ggra3622.t1 ID=Ggra3622.t1|Name=Ggra3622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2124bp|location=Sequence derived from alignment at tig00000850_pilon:332414..334794- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCAGGTGTTGGACCTGATGACGTGATCCCCATCGATTCGATCGAAGA TGATTTCCAGAGGAAGCAGGAGGAAATGCGTCGAGTCGCGAAGGACTGCG TCGTCGTCATTGACAATGTCCCGAAAATTGGACCAGAGAAGTACGACAAG CTTGTTGGCAAGCTGACTCCAATGTTTGAGAAGTCTGCTCGTATGCGCCG AGACGAGCAGGACAATCCGCGCTTAAACTTTGTTCGTAATGAAGGCGGGT CTACTTTGGGGTTTGCTATCGCGGAGTATATTACTCCAGAGGAGGCGTAC AAAGCGGTTGCCTCTCTTCATAACTTTCAACTGGATCGCTCTCATCGCTT CTGGGCTTGCACCGCAGGGGAACTCGAGAGGTTGCAGAATATCCCCGAAG AGTTTGTCCCGCCCCCTCCTCTTCCTGCCAGTCTGAAGAACAGGCCAAAT TTCAAGAGCTGGTTGCTTGACGAGCGCGGACGTGATCAGTTCATGATCCG ACACAACCATGAAACGAGCATTTATTGGCATGATCATATTGTGAAGCCTC AAATGGATTACGCGAAGGTCATGTGGACAGACGCTGGAGTAGTGTGGTCT CCTCGTGGGACATACCTAGCTACCTTCCATCAACGGGGTATTAAGCTGTG GGGTCGCGTTACGTCTCCTGATGGTGAAGTAGATTGGGTGATAGTTATGC GCTTTGAGCACACAAATGTGTCTCTTGTTCACTTCTCGCCTTGTGAACAG TATCTCATTACCTTTAATGGTACTGAACCCGAGAGAGATGACAAGAGAAA CCCACGTGCTATTATCATATGGAATGTTTTGACTGGAAAGAAGAAGCGTG GATTCATGGGTCCCCCGCGGTCCATGATAGGCCCCGATGGTACAATACCG TGGCCTATATTCCAATGGTCGCATGACGACAAGTACTTTGCGAGGTTGAA CGAGAACGGAATTTCTGTATATCAAACCCCAGACATGGGGCTCGTTGATA GGAAATCGATGAAGATTCCACATGTCAGAGGGTTTGCGTGGTCACCAACA TCGAACATTATGGCATACTGGACACCTGAAGTGAATGACTCACCTGCTCG AGTGACAGTCGTCGAGTTGCCCTCTAAGAAAGAAATCCGACAAAATGCGT TGTATTCGGTGTCATCTATTGTTCTTCATTGGCAGCAAGAAGGGAAATTC CTTTGCTGCAAAGTGGACCGCCTTACTAAAAGCAAGAAGGGGCAGTTTAC CCACTTTGAACTGTTCCGTGTGCAAGCTAAGGACATTCCAATTGAGGTTG TGGAATACAAGGAGAAGGATATCGTACAAGCGTTTGGGTGGGAACCACAA GGGCATCGTTTTGCTGTTATACACGGGTATAGTGACAAGCCCGGAAGAAC TGACGTGAGCTTCTTCACAATGGAGGGCATCACCGGAGAGCTTAAGCCAT TGTTTACTCTCGAAAGTAGAACTGTGAACCAGATGCGGTGGTCTCCAAAA GGACGCTTTATTCTTCTTGCAGCCCTTGGATCGCCAAATGGAAACCTTGA ATGGTACGATGTCAACGATGCAACTGGGAAGGAGAGTCCAGAGCCTGTTG GGACAAATCAACACTTTCTGTGTAATGACGTGCAATGGGACCCGTCCGGG CGATTCGTATCGAGCTTTGTCACGTATTGGCGAAACAGCAATGAGAACGG GTACATCATTTGGACAATGTATGGCAAAGAGTTGTGCCGCGTTAGTGTCG ACATGTTGTACCAGTTTGCCTGGAGACCAAGGCCCCCGTCTCTTCTTTCC CCCAAGCAACGCAAGGCAGTGAAGAAAAGCTTGAAGACCAGGAAAGAGAA GTATGAAAGGGAAGACAAGGACCTCAGAGACACTGTTAGCAGTGGAAAGG CCGCTCAGCGAAAAGCACAACGCGATGCTTTCTATGCCTTCCGAAACCAA GCCAAGAAAGTTCTCGAAGAAGAGGCTACATTGCGACACCAAGCGATCGC TGTGTACGATACAGCCGGAGATGACAAAGAAACCATTACCGAGATTGTTG AGACTGTTCTATCCGTCAAGAATGAAATTGACTTCAGCAAGAAATTACTT ACCAGCGATGATGAACGTGACTAA back to topprotein sequence of Ggra3622.t1 >Ggra3622.t1 ID=Ggra3622.t1|Name=Ggra3622.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=708bp
MPGVGPDDVIPIDSIEDDFQRKQEEMRRVAKDCVVVIDNVPKIGPEKYDK LVGKLTPMFEKSARMRRDEQDNPRLNFVRNEGGSTLGFAIAEYITPEEAY KAVASLHNFQLDRSHRFWACTAGELERLQNIPEEFVPPPPLPASLKNRPN FKSWLLDERGRDQFMIRHNHETSIYWHDHIVKPQMDYAKVMWTDAGVVWS PRGTYLATFHQRGIKLWGRVTSPDGEVDWVIVMRFEHTNVSLVHFSPCEQ YLITFNGTEPERDDKRNPRAIIIWNVLTGKKKRGFMGPPRSMIGPDGTIP WPIFQWSHDDKYFARLNENGISVYQTPDMGLVDRKSMKIPHVRGFAWSPT SNIMAYWTPEVNDSPARVTVVELPSKKEIRQNALYSVSSIVLHWQQEGKF LCCKVDRLTKSKKGQFTHFELFRVQAKDIPIEVVEYKEKDIVQAFGWEPQ GHRFAVIHGYSDKPGRTDVSFFTMEGITGELKPLFTLESRTVNQMRWSPK GRFILLAALGSPNGNLEWYDVNDATGKESPEPVGTNQHFLCNDVQWDPSG RFVSSFVTYWRNSNENGYIIWTMYGKELCRVSVDMLYQFAWRPRPPSLLS PKQRKAVKKSLKTRKEKYEREDKDLRDTVSSGKAAQRKAQRDAFYAFRNQ AKKVLEEEATLRHQAIAVYDTAGDDKETITEIVETVLSVKNEIDFSKKLL TSDDERD* back to topmRNA from alignment at tig00000850_pilon:332414..334794- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra3622.t1 ID=Ggra3622.t1|Name=Ggra3622.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2381bp|location=Sequence derived from alignment at tig00000850_pilon:332414..334794- (Gracilaria gracilis GNS1m male) ATGCCAGGTGTTGGACCTGATGACGTGATCCCCATCGATTCGATCGAAGA
TGATTTCCAGAGGAAGCAGGAGGAAATGCGTCGAGTCGCGAAGGACTGCG
TCGTCGTCATTGACAATGTCCCGAAAATTGGACCAGAGAAGTACGACAAG
CTTGTTGGCAAGCTGACTCCAATGTTTGAGAAGTCTGCTCGTATGCGCCG
AGACGAGCAGGACAATCCGCGCTTAAACTTTGTTCGTAATGAAGGCGGGT
CTACTTTGGGGTTTGCTATCGCGGAGTATATTACTCCAGAGGAGGCGTAC
AAAGCGGTTGCCTCTCTTCATAACTTTCAACTGGATCGCTCTCATCGCTT
CTGGGCTTGCACCGCAGGGGAACTCGAGAGGTTGCAGAATATCCCCGAAG
AGTTTGTCCCGCCCCCTCCTCTTCCTGCCAGTCTGAAGAACAGGCCAAAT
TTCAAGAGCTGGTTGCTTGACGAGCGCGGACGTGATCAGTTCATGATCCG
ACACAACCATGAAACGAGCATTTATTGGCATGATCATATTGTGAAGCCTC
AAATGGTAAGTTTCACGTTCAGTCTTTCTTTGATACAAACCTTAGCGAGG
AAGAAGATAGCGGACATTTCTACCGATGTCTCCTCACTGGCTCGAATGCT
TTGTGTGGGAGGATGCGGATTGTCTCAGAGGCTGTTTCAGAGCCTGCGTT
TCGTTCGATGAGATCCATAGTCTTATGGACATGGGTCTCGTTTATCGTAT
CGAGAATATGACGCTAACCTATACTATCGTTTCTTTTTTTTTTGTTTGTG
CTCTATGAGTAGGATTACGCGAAGGTCATGTGGACAGACGCTGGAGTAGT
GTGGTCTCCTCGTGGGACATACCTAGCTACCTTCCATCAACGGGGTATTA
AGCTGTGGGGTCGCGTTACGTCTCCTGATGGTGAAGTAGATTGGGTGATA
GTTATGCGCTTTGAGCACACAAATGTGTCTCTTGTTCACTTCTCGCCTTG
TGAACAGTATCTCATTACCTTTAATGGTACTGAACCCGAGAGAGATGACA
AGAGAAACCCACGTGCTATTATCATATGGAATGTTTTGACTGGAAAGAAG
AAGCGTGGATTCATGGGTCCCCCGCGGTCCATGATAGGCCCCGATGGTAC
AATACCGTGGCCTATATTCCAATGGTCGCATGACGACAAGTACTTTGCGA
GGTTGAACGAGAACGGAATTTCTGTATATCAAACCCCAGACATGGGGCTC
GTTGATAGGAAATCGATGAAGATTCCACATGTCAGAGGGTTTGCGTGGTC
ACCAACATCGAACATTATGGCATACTGGACACCTGAAGTGAATGACTCAC
CTGCTCGAGTGACAGTCGTCGAGTTGCCCTCTAAGAAAGAAATCCGACAA
AATGCGTTGTATTCGGTGTCATCTATTGTTCTTCATTGGCAGCAAGAAGG
GAAATTCCTTTGCTGCAAAGTGGACCGCCTTACTAAAAGCAAGAAGGGGC
AGTTTACCCACTTTGAACTGTTCCGTGTGCAAGCTAAGGACATTCCAATT
GAGGTTGTGGAATACAAGGAGAAGGATATCGTACAAGCGTTTGGGTGGGA
ACCACAAGGGCATCGTTTTGCTGTTATACACGGGTATAGTGACAAGCCCG
GAAGAACTGACGTGAGCTTCTTCACAATGGAGGGCATCACCGGAGAGCTT
AAGCCATTGTTTACTCTCGAAAGTAGAACTGTGAACCAGATGCGGTGGTC
TCCAAAAGGACGCTTTATTCTTCTTGCAGCCCTTGGATCGCCAAATGGAA
ACCTTGAATGGTACGATGTCAACGATGCAACTGGGAAGGAGAGTCCAGAG
CCTGTTGGGACAAATCAACACTTTCTGTGTAATGACGTGCAATGGGACCC
GTCCGGGCGATTCGTATCGAGCTTTGTCACGTATTGGCGAAACAGCAATG
AGAACGGGTACATCATTTGGACAATGTATGGCAAAGAGTTGTGCCGCGTT
AGTGTCGACATGTTGTACCAGTTTGCCTGGAGACCAAGGCCCCCGTCTCT
TCTTTCCCCCAAGCAACGCAAGGCAGTGAAGAAAAGCTTGAAGACCAGGA
AAGAGAAGTATGAAAGGGAAGACAAGGACCTCAGAGACACTGTTAGCAGT
GGAAAGGCCGCTCAGCGAAAAGCACAACGCGATGCTTTCTATGCCTTCCG
AAACCAAGCCAAGAAAGTTCTCGAAGAAGAGGCTACATTGCGACACCAAG
CGATCGCTGTGTACGATACAGCCGGAGATGACAAAGAAACCATTACCGAG
ATTGTTGAGACTGTTCTATCCGTCAAGAATGAAATTGACTTCAGCAAGAA
ATTACTTACCAGCGATGATGAACGTGACTAA back to topCoding sequence (CDS) from alignment at tig00000850_pilon:332414..334794- >Ggra3622.t1 ID=Ggra3622.t1|Name=Ggra3622.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2124bp|location=Sequence derived from alignment at tig00000850_pilon:332414..334794- (Gracilaria gracilis GNS1m male) ATGCCAGGTGTTGGACCTGATGACGTGATCCCCATCGATTCGATCGAAGA TGATTTCCAGAGGAAGCAGGAGGAAATGCGTCGAGTCGCGAAGGACTGCG TCGTCGTCATTGACAATGTCCCGAAAATTGGACCAGAGAAGTACGACAAG CTTGTTGGCAAGCTGACTCCAATGTTTGAGAAGTCTGCTCGTATGCGCCG AGACGAGCAGGACAATCCGCGCTTAAACTTTGTTCGTAATGAAGGCGGGT CTACTTTGGGGTTTGCTATCGCGGAGTATATTACTCCAGAGGAGGCGTAC AAAGCGGTTGCCTCTCTTCATAACTTTCAACTGGATCGCTCTCATCGCTT CTGGGCTTGCACCGCAGGGGAACTCGAGAGGTTGCAGAATATCCCCGAAG AGTTTGTCCCGCCCCCTCCTCTTCCTGCCAGTCTGAAGAACAGGCCAAAT TTCAAGAGCTGGTTGCTTGACGAGCGCGGACGTGATCAGTTCATGATCCG ACACAACCATGAAACGAGCATTTATTGGCATGATCATATTGTGAAGCCTC AAATGGATTACGCGAAGGTCATGTGGACAGACGCTGGAGTAGTGTGGTCT CCTCGTGGGACATACCTAGCTACCTTCCATCAACGGGGTATTAAGCTGTG GGGTCGCGTTACGTCTCCTGATGGTGAAGTAGATTGGGTGATAGTTATGC GCTTTGAGCACACAAATGTGTCTCTTGTTCACTTCTCGCCTTGTGAACAG TATCTCATTACCTTTAATGGTACTGAACCCGAGAGAGATGACAAGAGAAA CCCACGTGCTATTATCATATGGAATGTTTTGACTGGAAAGAAGAAGCGTG GATTCATGGGTCCCCCGCGGTCCATGATAGGCCCCGATGGTACAATACCG TGGCCTATATTCCAATGGTCGCATGACGACAAGTACTTTGCGAGGTTGAA CGAGAACGGAATTTCTGTATATCAAACCCCAGACATGGGGCTCGTTGATA GGAAATCGATGAAGATTCCACATGTCAGAGGGTTTGCGTGGTCACCAACA TCGAACATTATGGCATACTGGACACCTGAAGTGAATGACTCACCTGCTCG AGTGACAGTCGTCGAGTTGCCCTCTAAGAAAGAAATCCGACAAAATGCGT TGTATTCGGTGTCATCTATTGTTCTTCATTGGCAGCAAGAAGGGAAATTC CTTTGCTGCAAAGTGGACCGCCTTACTAAAAGCAAGAAGGGGCAGTTTAC CCACTTTGAACTGTTCCGTGTGCAAGCTAAGGACATTCCAATTGAGGTTG TGGAATACAAGGAGAAGGATATCGTACAAGCGTTTGGGTGGGAACCACAA GGGCATCGTTTTGCTGTTATACACGGGTATAGTGACAAGCCCGGAAGAAC TGACGTGAGCTTCTTCACAATGGAGGGCATCACCGGAGAGCTTAAGCCAT TGTTTACTCTCGAAAGTAGAACTGTGAACCAGATGCGGTGGTCTCCAAAA GGACGCTTTATTCTTCTTGCAGCCCTTGGATCGCCAAATGGAAACCTTGA ATGGTACGATGTCAACGATGCAACTGGGAAGGAGAGTCCAGAGCCTGTTG GGACAAATCAACACTTTCTGTGTAATGACGTGCAATGGGACCCGTCCGGG CGATTCGTATCGAGCTTTGTCACGTATTGGCGAAACAGCAATGAGAACGG GTACATCATTTGGACAATGTATGGCAAAGAGTTGTGCCGCGTTAGTGTCG ACATGTTGTACCAGTTTGCCTGGAGACCAAGGCCCCCGTCTCTTCTTTCC CCCAAGCAACGCAAGGCAGTGAAGAAAAGCTTGAAGACCAGGAAAGAGAA GTATGAAAGGGAAGACAAGGACCTCAGAGACACTGTTAGCAGTGGAAAGG CCGCTCAGCGAAAAGCACAACGCGATGCTTTCTATGCCTTCCGAAACCAA GCCAAGAAAGTTCTCGAAGAAGAGGCTACATTGCGACACCAAGCGATCGC TGTGTACGATACAGCCGGAGATGACAAAGAAACCATTACCGAGATTGTTG AGACTGTTCTATCCGTCAAGAATGAAATTGACTTCAGCAAGAAATTACTT ACCAGCGATGATGAACGTGACTAA back to top
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