Ggra10266.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10266.t1
Unique NameGgra10266.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length520
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:294383..295942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10266Ggra10266Gracilaria gracilis GNS1m malegenetig00000016_pilon 294383..295942 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10266.t1.stop1Ggra10266.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 294383..294385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10266.t1.CDS1Ggra10266.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 294383..295942 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10266.t1.exon1Ggra10266.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 294383..295942 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10266.t1.start1Ggra10266.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 295940..295942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10266.t1Ggra10266.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 294383..295942 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10266.t1 ID=Ggra10266.t1|Name=Ggra10266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=520bp
MANPIVSDLPFTERIDMREKALAWISRDTGLQEFLVPDELTSKWSADQKK
VWTTTVIDRFMSAKHQAGREARARVFARENAGWLRRACVRLQQDLSDHRD
LTRMAVLLETLWNEVSATLSDSRWAECYIMFDSALISLRVAYVWLYDKLE
NEDADLQSRKNVFETVVNSFFNAQAPTDDKADKHSANFRALQRVWRTEFE
SYTKADDLEAKLKRLEESQNLMKVATAVSKFLNAVDVDSSWMWEMQRLQE
DIKAGNVKRRQTPKKRREPAPEPPEPESSGSYEPRAADSDFDIHIAEKVA
SNEDEEEESEEESDELMRGSMSQRKDNGTTVRRSMRVAKAKVDRYRPTHG
ERKGRQKRAAARRAALRFSESPTPSLSDDVPIAHRGRPQRGRRTGRVPAR
IYEGRDVDPNDDVANIRRIVKLPARSNTRRAMPRSGISRGRVLKDGRRRT
TLRSTTNVVKDDEDEDGLGDYGSLGTALGLGNDDMHGDFGSPTIGGSIPG
APVSLPDRRTRLAALLEPS*
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spliced messenger RNA

>Ggra10266.t1 ID=Ggra10266.t1|Name=Ggra10266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000016_pilon:294383..295942- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAATCCTATCGTCTCTGACCTGCCGTTCACCGAGCGCATTGACAT
GCGAGAGAAGGCGTTGGCCTGGATTTCTCGTGACACCGGTCTGCAAGAGT
TTCTTGTTCCGGACGAGTTGACAAGCAAATGGAGCGCAGATCAGAAAAAA
GTATGGACCACGACCGTCATTGATCGATTCATGAGCGCGAAACATCAAGC
CGGTCGCGAAGCACGTGCGCGTGTCTTCGCGCGAGAGAATGCGGGCTGGT
TACGACGAGCGTGCGTTCGTTTGCAACAAGATCTTTCGGACCATAGGGAT
CTCACCCGCATGGCCGTCTTGCTTGAGACGTTGTGGAACGAAGTAAGCGC
TACTCTGAGTGACTCGAGGTGGGCCGAATGCTATATTATGTTCGATTCTG
CGCTCATTTCGTTGCGCGTCGCGTATGTTTGGCTGTACGACAAGCTCGAG
AATGAAGATGCCGATTTGCAATCTAGGAAAAATGTGTTTGAGACTGTCGT
CAATTCCTTCTTTAACGCCCAAGCTCCCACCGATGATAAAGCCGACAAGC
ACTCGGCCAATTTTCGCGCTTTGCAACGAGTTTGGCGAACTGAATTTGAA
AGCTATACCAAAGCCGACGATCTTGAAGCAAAACTCAAACGTTTGGAGGA
GTCTCAGAACTTGATGAAGGTCGCTACAGCTGTGAGTAAGTTCCTGAACG
CCGTCGATGTGGATTCCAGTTGGATGTGGGAAATGCAGAGACTCCAAGAA
GATATCAAAGCGGGTAACGTTAAACGACGACAAACGCCAAAGAAACGACG
GGAACCGGCTCCTGAACCCCCAGAACCTGAGTCCTCTGGTTCGTATGAAC
CGCGTGCCGCCGATAGTGACTTCGATATCCACATCGCCGAAAAGGTGGCT
AGCAACGAAGATGAAGAAGAGGAGTCTGAAGAAGAGTCCGACGAACTCAT
GCGCGGGTCCATGTCACAAAGGAAGGATAACGGAACCACGGTTCGTAGGT
CGATGCGCGTTGCTAAAGCAAAAGTGGACCGGTACAGACCAACTCACGGA
GAACGAAAAGGAAGGCAAAAGAGAGCTGCAGCTCGCCGCGCCGCACTTCG
GTTTTCGGAATCCCCGACTCCAAGCTTATCTGACGATGTTCCGATTGCGC
ATCGGGGACGCCCGCAACGGGGACGTCGCACTGGACGGGTCCCCGCTCGT
ATTTACGAAGGGCGAGACGTAGATCCCAATGACGACGTGGCGAATATTAG
GCGCATTGTGAAACTACCAGCAAGGAGCAATACAAGACGTGCGATGCCTC
GCTCCGGTATTTCTAGAGGTCGGGTACTAAAGGATGGTCGTAGAAGAACA
ACTCTCCGCAGCACAACAAATGTGGTTAAGGATGATGAAGATGAGGATGG
CTTGGGTGATTATGGAAGTCTTGGAACTGCCCTTGGTTTGGGTAACGATG
ATATGCACGGAGATTTTGGTAGTCCTACTATAGGCGGCTCTATACCCGGA
GCACCGGTCTCTCTTCCAGACCGCAGAACTCGCCTTGCTGCGTTGTTGGA
ACCTTCGTGA
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protein sequence of Ggra10266.t1

>Ggra10266.t1 ID=Ggra10266.t1|Name=Ggra10266.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=520bp
MANPIVSDLPFTERIDMREKALAWISRDTGLQEFLVPDELTSKWSADQKK
VWTTTVIDRFMSAKHQAGREARARVFARENAGWLRRACVRLQQDLSDHRD
LTRMAVLLETLWNEVSATLSDSRWAECYIMFDSALISLRVAYVWLYDKLE
NEDADLQSRKNVFETVVNSFFNAQAPTDDKADKHSANFRALQRVWRTEFE
SYTKADDLEAKLKRLEESQNLMKVATAVSKFLNAVDVDSSWMWEMQRLQE
DIKAGNVKRRQTPKKRREPAPEPPEPESSGSYEPRAADSDFDIHIAEKVA
SNEDEEEESEEESDELMRGSMSQRKDNGTTVRRSMRVAKAKVDRYRPTHG
ERKGRQKRAAARRAALRFSESPTPSLSDDVPIAHRGRPQRGRRTGRVPAR
IYEGRDVDPNDDVANIRRIVKLPARSNTRRAMPRSGISRGRVLKDGRRRT
TLRSTTNVVKDDEDEDGLGDYGSLGTALGLGNDDMHGDFGSPTIGGSIPG
APVSLPDRRTRLAALLEPS*
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mRNA from alignment at tig00000016_pilon:294383..295942-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10266.t1 ID=Ggra10266.t1|Name=Ggra10266.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000016_pilon:294383..295942- (Gracilaria gracilis GNS1m male)
ATGGCTAATCCTATCGTCTCTGACCTGCCGTTCACCGAGCGCATTGACAT
GCGAGAGAAGGCGTTGGCCTGGATTTCTCGTGACACCGGTCTGCAAGAGT
TTCTTGTTCCGGACGAGTTGACAAGCAAATGGAGCGCAGATCAGAAAAAA
GTATGGACCACGACCGTCATTGATCGATTCATGAGCGCGAAACATCAAGC
CGGTCGCGAAGCACGTGCGCGTGTCTTCGCGCGAGAGAATGCGGGCTGGT
TACGACGAGCGTGCGTTCGTTTGCAACAAGATCTTTCGGACCATAGGGAT
CTCACCCGCATGGCCGTCTTGCTTGAGACGTTGTGGAACGAAGTAAGCGC
TACTCTGAGTGACTCGAGGTGGGCCGAATGCTATATTATGTTCGATTCTG
CGCTCATTTCGTTGCGCGTCGCGTATGTTTGGCTGTACGACAAGCTCGAG
AATGAAGATGCCGATTTGCAATCTAGGAAAAATGTGTTTGAGACTGTCGT
CAATTCCTTCTTTAACGCCCAAGCTCCCACCGATGATAAAGCCGACAAGC
ACTCGGCCAATTTTCGCGCTTTGCAACGAGTTTGGCGAACTGAATTTGAA
AGCTATACCAAAGCCGACGATCTTGAAGCAAAACTCAAACGTTTGGAGGA
GTCTCAGAACTTGATGAAGGTCGCTACAGCTGTGAGTAAGTTCCTGAACG
CCGTCGATGTGGATTCCAGTTGGATGTGGGAAATGCAGAGACTCCAAGAA
GATATCAAAGCGGGTAACGTTAAACGACGACAAACGCCAAAGAAACGACG
GGAACCGGCTCCTGAACCCCCAGAACCTGAGTCCTCTGGTTCGTATGAAC
CGCGTGCCGCCGATAGTGACTTCGATATCCACATCGCCGAAAAGGTGGCT
AGCAACGAAGATGAAGAAGAGGAGTCTGAAGAAGAGTCCGACGAACTCAT
GCGCGGGTCCATGTCACAAAGGAAGGATAACGGAACCACGGTTCGTAGGT
CGATGCGCGTTGCTAAAGCAAAAGTGGACCGGTACAGACCAACTCACGGA
GAACGAAAAGGAAGGCAAAAGAGAGCTGCAGCTCGCCGCGCCGCACTTCG
GTTTTCGGAATCCCCGACTCCAAGCTTATCTGACGATGTTCCGATTGCGC
ATCGGGGACGCCCGCAACGGGGACGTCGCACTGGACGGGTCCCCGCTCGT
ATTTACGAAGGGCGAGACGTAGATCCCAATGACGACGTGGCGAATATTAG
GCGCATTGTGAAACTACCAGCAAGGAGCAATACAAGACGTGCGATGCCTC
GCTCCGGTATTTCTAGAGGTCGGGTACTAAAGGATGGTCGTAGAAGAACA
ACTCTCCGCAGCACAACAAATGTGGTTAAGGATGATGAAGATGAGGATGG
CTTGGGTGATTATGGAAGTCTTGGAACTGCCCTTGGTTTGGGTAACGATG
ATATGCACGGAGATTTTGGTAGTCCTACTATAGGCGGCTCTATACCCGGA
GCACCGGTCTCTCTTCCAGACCGCAGAACTCGCCTTGCTGCGTTGTTGGA
ACCTTCGTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:294383..295942-

>Ggra10266.t1 ID=Ggra10266.t1|Name=Ggra10266.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1560bp|location=Sequence derived from alignment at tig00000016_pilon:294383..295942- (Gracilaria gracilis GNS1m male)
ATGGCTAATCCTATCGTCTCTGACCTGCCGTTCACCGAGCGCATTGACAT
GCGAGAGAAGGCGTTGGCCTGGATTTCTCGTGACACCGGTCTGCAAGAGT
TTCTTGTTCCGGACGAGTTGACAAGCAAATGGAGCGCAGATCAGAAAAAA
GTATGGACCACGACCGTCATTGATCGATTCATGAGCGCGAAACATCAAGC
CGGTCGCGAAGCACGTGCGCGTGTCTTCGCGCGAGAGAATGCGGGCTGGT
TACGACGAGCGTGCGTTCGTTTGCAACAAGATCTTTCGGACCATAGGGAT
CTCACCCGCATGGCCGTCTTGCTTGAGACGTTGTGGAACGAAGTAAGCGC
TACTCTGAGTGACTCGAGGTGGGCCGAATGCTATATTATGTTCGATTCTG
CGCTCATTTCGTTGCGCGTCGCGTATGTTTGGCTGTACGACAAGCTCGAG
AATGAAGATGCCGATTTGCAATCTAGGAAAAATGTGTTTGAGACTGTCGT
CAATTCCTTCTTTAACGCCCAAGCTCCCACCGATGATAAAGCCGACAAGC
ACTCGGCCAATTTTCGCGCTTTGCAACGAGTTTGGCGAACTGAATTTGAA
AGCTATACCAAAGCCGACGATCTTGAAGCAAAACTCAAACGTTTGGAGGA
GTCTCAGAACTTGATGAAGGTCGCTACAGCTGTGAGTAAGTTCCTGAACG
CCGTCGATGTGGATTCCAGTTGGATGTGGGAAATGCAGAGACTCCAAGAA
GATATCAAAGCGGGTAACGTTAAACGACGACAAACGCCAAAGAAACGACG
GGAACCGGCTCCTGAACCCCCAGAACCTGAGTCCTCTGGTTCGTATGAAC
CGCGTGCCGCCGATAGTGACTTCGATATCCACATCGCCGAAAAGGTGGCT
AGCAACGAAGATGAAGAAGAGGAGTCTGAAGAAGAGTCCGACGAACTCAT
GCGCGGGTCCATGTCACAAAGGAAGGATAACGGAACCACGGTTCGTAGGT
CGATGCGCGTTGCTAAAGCAAAAGTGGACCGGTACAGACCAACTCACGGA
GAACGAAAAGGAAGGCAAAAGAGAGCTGCAGCTCGCCGCGCCGCACTTCG
GTTTTCGGAATCCCCGACTCCAAGCTTATCTGACGATGTTCCGATTGCGC
ATCGGGGACGCCCGCAACGGGGACGTCGCACTGGACGGGTCCCCGCTCGT
ATTTACGAAGGGCGAGACGTAGATCCCAATGACGACGTGGCGAATATTAG
GCGCATTGTGAAACTACCAGCAAGGAGCAATACAAGACGTGCGATGCCTC
GCTCCGGTATTTCTAGAGGTCGGGTACTAAAGGATGGTCGTAGAAGAACA
ACTCTCCGCAGCACAACAAATGTGGTTAAGGATGATGAAGATGAGGATGG
CTTGGGTGATTATGGAAGTCTTGGAACTGCCCTTGGTTTGGGTAACGATG
ATATGCACGGAGATTTTGGTAGTCCTACTATAGGCGGCTCTATACCCGGA
GCACCGGTCTCTCTTCCAGACCGCAGAACTCGCCTTGCTGCGTTGTTGGA
ACCTTCGTGA
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