Ggra3583.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3583.t1
Unique NameGgra3583.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:33702..34472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3583Ggra3583Gracilaria gracilis GNS1m malegenetig00000850_pilon 33702..34472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3583.t1Ggra3583.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 33702..34472 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3583.t1.start1Ggra3583.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 33702..33704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3583.t1.CDS1Ggra3583.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 33702..33936 +
Ggra3583.t1.CDS2Ggra3583.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 34069..34472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3583.t1.exon1Ggra3583.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 33702..33936 +
Ggra3583.t1.exon2Ggra3583.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 34069..34472 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3583.t1.intron1Ggra3583.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 33937..34068 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3583.t1.stop1Ggra3583.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 34470..34472 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3583.t1 ID=Ggra3583.t1|Name=Ggra3583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MPIVHGHIVLYDPFRRRSLKSTKSFRIGKAMEQATQIHNENLEEGDEAIR
IQFGSTARQYSNNIMDTVGRQLQISRVSDWGALRSIKQKLRNEVAHCNQK
KNTSSKTKGKVGGTKRKHPDEASTKTRGPILECTGRREAKKVTKYVRKRG
GLHNSGIVRKRINESRDIDSSNDDSCSQTQTRSSTKHMRNRRMVSNTDGD
ESFESSSGKHHG*
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spliced messenger RNA

>Ggra3583.t1 ID=Ggra3583.t1|Name=Ggra3583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000850_pilon:33702..34472+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATCGTTCATGGCCACATCGTTCTCTACGATCCCTTTCGTCGAAG
AAGTTTGAAATCTACGAAAAGTTTCAGAATAGGTAAAGCAATGGAACAGG
CTACACAGATTCACAACGAGAACCTGGAAGAAGGAGATGAAGCGATTCGA
ATTCAATTCGGTTCCACCGCGAGACAGTACTCCAACAACATCATGGACAC
AGTTGGGCGCCAGCTGCAGATTTCTCGCGTGTCCGATTGGGGAGCCCTCC
GCTCCATCAAGCAGAAACTTCGAAACGAGGTTGCCCATTGCAACCAAAAG
AAGAACACATCGTCGAAAACGAAGGGTAAGGTCGGTGGAACGAAACGGAA
ACATCCGGATGAGGCCTCGACGAAGACACGGGGACCCATCTTGGAATGCA
CCGGACGCCGCGAAGCAAAGAAGGTCACGAAGTACGTTAGGAAAAGAGGA
GGTCTTCATAATTCCGGTATTGTTCGTAAGCGCATCAATGAGAGCCGTGA
TATTGATTCGAGTAATGACGACAGCTGTTCTCAGACTCAAACACGATCTT
CCACCAAGCATATGAGAAATCGAAGAATGGTTTCAAATACTGATGGAGAC
GAGAGCTTTGAATCTTCAAGCGGAAAGCACCACGGGTGA
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protein sequence of Ggra3583.t1

>Ggra3583.t1 ID=Ggra3583.t1|Name=Ggra3583.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MPIVHGHIVLYDPFRRRSLKSTKSFRIGKAMEQATQIHNENLEEGDEAIR
IQFGSTARQYSNNIMDTVGRQLQISRVSDWGALRSIKQKLRNEVAHCNQK
KNTSSKTKGKVGGTKRKHPDEASTKTRGPILECTGRREAKKVTKYVRKRG
GLHNSGIVRKRINESRDIDSSNDDSCSQTQTRSSTKHMRNRRMVSNTDGD
ESFESSSGKHHG*
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mRNA from alignment at tig00000850_pilon:33702..34472+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3583.t1 ID=Ggra3583.t1|Name=Ggra3583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000850_pilon:33702..34472+ (Gracilaria gracilis GNS1m male)
ATGCCCATCGTTCATGGCCACATCGTTCTCTACGATCCCTTTCGTCGAAG
AAGTTTGAAATCTACGAAAAGTTTCAGAATAGGTAAAGCAATGGAACAGG
CTACACAGATTCACAACGAGAACCTGGAAGAAGGAGATGAAGCGATTCGA
ATTCAATTCGGTTCCACCGCGAGACAGTACTCCAACAACATCATGGACAC
AGTTGGGCGCCAGCTGCAGATTTCTCGCGTGTCCGGTAAGCACGTCGGCA
GGCGAAGTTATGGAGAGATAAAGAAGACCACAGATCGTAAGGCATTTAAC
GATGCGGTTCACAGCATCATCTGATACGTAAACGAGAAGCATAAGCTGTT
GATGTACACCGATGGAGATTGGGGAGCCCTCCGCTCCATCAAGCAGAAAC
TTCGAAACGAGGTTGCCCATTGCAACCAAAAGAAGAACACATCGTCGAAA
ACGAAGGGTAAGGTCGGTGGAACGAAACGGAAACATCCGGATGAGGCCTC
GACGAAGACACGGGGACCCATCTTGGAATGCACCGGACGCCGCGAAGCAA
AGAAGGTCACGAAGTACGTTAGGAAAAGAGGAGGTCTTCATAATTCCGGT
ATTGTTCGTAAGCGCATCAATGAGAGCCGTGATATTGATTCGAGTAATGA
CGACAGCTGTTCTCAGACTCAAACACGATCTTCCACCAAGCATATGAGAA
ATCGAAGAATGGTTTCAAATACTGATGGAGACGAGAGCTTTGAATCTTCA
AGCGGAAAGCACCACGGGTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:33702..34472+

>Ggra3583.t1 ID=Ggra3583.t1|Name=Ggra3583.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000850_pilon:33702..34472+ (Gracilaria gracilis GNS1m male)
ATGCCCATCGTTCATGGCCACATCGTTCTCTACGATCCCTTTCGTCGAAG
AAGTTTGAAATCTACGAAAAGTTTCAGAATAGGTAAAGCAATGGAACAGG
CTACACAGATTCACAACGAGAACCTGGAAGAAGGAGATGAAGCGATTCGA
ATTCAATTCGGTTCCACCGCGAGACAGTACTCCAACAACATCATGGACAC
AGTTGGGCGCCAGCTGCAGATTTCTCGCGTGTCCGATTGGGGAGCCCTCC
GCTCCATCAAGCAGAAACTTCGAAACGAGGTTGCCCATTGCAACCAAAAG
AAGAACACATCGTCGAAAACGAAGGGTAAGGTCGGTGGAACGAAACGGAA
ACATCCGGATGAGGCCTCGACGAAGACACGGGGACCCATCTTGGAATGCA
CCGGACGCCGCGAAGCAAAGAAGGTCACGAAGTACGTTAGGAAAAGAGGA
GGTCTTCATAATTCCGGTATTGTTCGTAAGCGCATCAATGAGAGCCGTGA
TATTGATTCGAGTAATGACGACAGCTGTTCTCAGACTCAAACACGATCTT
CCACCAAGCATATGAGAAATCGAAGAATGGTTTCAAATACTGATGGAGAC
GAGAGCTTTGAATCTTCAAGCGGAAAGCACCACGGGTGA
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