Ggra3696.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3696.t1
Unique NameGgra3696.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:1116996..1117616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_06112T0
PFAMsMaf
Max annot lvl4751|Fungi
Evalue2.17e-51
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota,3A5UJ@33154|Opisthokonta,3PF9V@4751|Fungi
DescriptionMaf-like protein
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3696Ggra3696Gracilaria gracilis GNS1m malegenetig00000850_pilon 1116996..1117616 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3696.t1.stop1Ggra3696.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 1116996..1116998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3696.t1.CDS1Ggra3696.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 1116996..1117616 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3696.t1.exon1Ggra3696.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 1116996..1117616 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3696.t1.start1Ggra3696.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 1117614..1117616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3696.t1Ggra3696.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 1116996..1117616 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3696.t1 ID=Ggra3696.t1|Name=Ggra3696.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp
MASGSEQPVVILGTSSTTRQKLFRASFSTDFKTMSPDIDEKAINPGSGDR
SNTDPKLLTLKIANAKADALQNNLPPNAILITSDQVLVYRGDIREKPQSV
KECREYLESYAKYPATTITAVVIHNSKTNHRISGVDTCTQHFRTIPDQVI
DHLLRKGDVLHCAGGVTVEDELLKPYLSIRQGDLDSFMGLPIRLLRRLLS
EIGIRL*
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spliced messenger RNA

>Ggra3696.t1 ID=Ggra3696.t1|Name=Ggra3696.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000850_pilon:1116996..1117616- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAGGTTCCGAACAACCTGTCGTCATTCTCGGCACCTCGTCCAC
TACGCGTCAAAAGCTGTTCCGCGCCAGCTTTTCCACAGACTTCAAGACCA
TGAGCCCCGACATTGACGAGAAGGCCATCAACCCCGGCTCTGGTGACCGC
AGTAACACTGACCCCAAGCTTTTAACTCTCAAGATTGCAAACGCAAAAGC
CGACGCTTTACAAAACAATCTACCGCCAAACGCTATTCTAATCACTTCCG
ACCAGGTACTCGTGTATAGAGGAGATATTCGTGAGAAGCCACAGTCTGTT
AAAGAGTGCCGCGAGTACCTCGAGAGTTACGCCAAATACCCGGCCACAAC
CATCACCGCCGTCGTTATTCACAACTCCAAAACTAATCACAGAATAAGCG
GCGTCGACACTTGTACACAGCATTTCCGTACCATCCCGGACCAAGTCATC
GATCATCTACTACGCAAGGGAGACGTGCTCCACTGCGCAGGCGGAGTCAC
CGTCGAGGATGAACTGCTCAAGCCGTATCTATCCATTCGACAAGGCGACT
TGGACAGCTTTATGGGCCTACCCATTCGACTCTTGCGTCGGCTTCTGTCC
GAGATTGGCATACGCCTTTGA
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protein sequence of Ggra3696.t1

>Ggra3696.t1 ID=Ggra3696.t1|Name=Ggra3696.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=207bp
MASGSEQPVVILGTSSTTRQKLFRASFSTDFKTMSPDIDEKAINPGSGDR
SNTDPKLLTLKIANAKADALQNNLPPNAILITSDQVLVYRGDIREKPQSV
KECREYLESYAKYPATTITAVVIHNSKTNHRISGVDTCTQHFRTIPDQVI
DHLLRKGDVLHCAGGVTVEDELLKPYLSIRQGDLDSFMGLPIRLLRRLLS
EIGIRL*
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mRNA from alignment at tig00000850_pilon:1116996..1117616-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3696.t1 ID=Ggra3696.t1|Name=Ggra3696.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=621bp|location=Sequence derived from alignment at tig00000850_pilon:1116996..1117616- (Gracilaria gracilis GNS1m male)
ATGGCTTCAGGTTCCGAACAACCTGTCGTCATTCTCGGCACCTCGTCCAC
TACGCGTCAAAAGCTGTTCCGCGCCAGCTTTTCCACAGACTTCAAGACCA
TGAGCCCCGACATTGACGAGAAGGCCATCAACCCCGGCTCTGGTGACCGC
AGTAACACTGACCCCAAGCTTTTAACTCTCAAGATTGCAAACGCAAAAGC
CGACGCTTTACAAAACAATCTACCGCCAAACGCTATTCTAATCACTTCCG
ACCAGGTACTCGTGTATAGAGGAGATATTCGTGAGAAGCCACAGTCTGTT
AAAGAGTGCCGCGAGTACCTCGAGAGTTACGCCAAATACCCGGCCACAAC
CATCACCGCCGTCGTTATTCACAACTCCAAAACTAATCACAGAATAAGCG
GCGTCGACACTTGTACACAGCATTTCCGTACCATCCCGGACCAAGTCATC
GATCATCTACTACGCAAGGGAGACGTGCTCCACTGCGCAGGCGGAGTCAC
CGTCGAGGATGAACTGCTCAAGCCGTATCTATCCATTCGACAAGGCGACT
TGGACAGCTTTATGGGCCTACCCATTCGACTCTTGCGTCGGCTTCTGTCC
GAGATTGGCATACGCCTTTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:1116996..1117616-

>Ggra3696.t1 ID=Ggra3696.t1|Name=Ggra3696.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=621bp|location=Sequence derived from alignment at tig00000850_pilon:1116996..1117616- (Gracilaria gracilis GNS1m male)
ATGGCTTCAGGTTCCGAACAACCTGTCGTCATTCTCGGCACCTCGTCCAC
TACGCGTCAAAAGCTGTTCCGCGCCAGCTTTTCCACAGACTTCAAGACCA
TGAGCCCCGACATTGACGAGAAGGCCATCAACCCCGGCTCTGGTGACCGC
AGTAACACTGACCCCAAGCTTTTAACTCTCAAGATTGCAAACGCAAAAGC
CGACGCTTTACAAAACAATCTACCGCCAAACGCTATTCTAATCACTTCCG
ACCAGGTACTCGTGTATAGAGGAGATATTCGTGAGAAGCCACAGTCTGTT
AAAGAGTGCCGCGAGTACCTCGAGAGTTACGCCAAATACCCGGCCACAAC
CATCACCGCCGTCGTTATTCACAACTCCAAAACTAATCACAGAATAAGCG
GCGTCGACACTTGTACACAGCATTTCCGTACCATCCCGGACCAAGTCATC
GATCATCTACTACGCAAGGGAGACGTGCTCCACTGCGCAGGCGGAGTCAC
CGTCGAGGATGAACTGCTCAAGCCGTATCTATCCATTCGACAAGGCGACT
TGGACAGCTTTATGGGCCTACCCATTCGACTCTTGCGTCGGCTTCTGTCC
GAGATTGGCATACGCCTTTGA
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