Ggra3740.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3740.t1
Unique Name	Ggra3740.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	449

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000850_pilon	contig	tig00000850_pilon:1278704..1280050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3740	Ggra3740	Gracilaria gracilis GNS1m male	gene	tig00000850_pilon 1278704..1280050 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3740.t1.start1	Ggra3740.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000850_pilon 1278704..1278706 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3740.t1.CDS1	Ggra3740.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000850_pilon 1278704..1280050 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3740.t1.exon1	Ggra3740.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000850_pilon 1278704..1280050 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3740.t1.stop1	Ggra3740.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000850_pilon 1280048..1280050 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3740.t1	Ggra3740.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000850_pilon 1278704..1280050 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000850_pilon:1278704..1280050+
coding sequence from alignment at tig00000850_pilon:1278704..1280050+

mRNA sequence

>Ggra3740.t1 ID=Ggra3740.t1|Name=Ggra3740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=449bp
MGAVTIRHPLPRIAALSAVPTIRSITGIDVCPPAPSPLPPLLPPPPPPHM
SACKPRCASSSDDEKPFPLGKPRISSVTDSDSTPSSPRASVRADRSASPP
LRRKHPDVGVHPPGPSTPSDDDHDGDDHNDDHHDNDDNDDDNASTYSHAS
VLNLDELDDDHLLGALRLRRPTLRLSRARKNNNNNIININIKPSGRRAVV
LACNEFQPHNRLQPLFERALHALVDAVDADALSASAAVASFRAFSPLFTS
TERTVVAQLFRNVCAQLRREAPTPWRSPLCSETTRVAYPPGVDEALLRAV
MYGAHILPAAGAETILIRLAGAYHREQLRKRCSKWHRVMVPLSFAMTLTA
LLAALSRLECSPSFRRLRSRAATSRAAEPHAVVAVKVNYDGARLAFDVSL
HGEAPCTVLFRKPRLMAARKLCDFDALVSEIGGVISEFGQHVSAGEAC*

spliced messenger RNA

>Ggra3740.t1 ID=Ggra3740.t1|Name=Ggra3740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000850_pilon:1278704..1280050+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCCGTCACCATCCGACACCCGCTGCCGCGGATAGCGGCGCTTTC
CGCCGTGCCCACCATTCGTTCCATCACGGGCATCGACGTCTGCccgccgg
cgccgtcgccgctgccgccgctgctgccgccgccgccgccgccgcACATG
AGCGCGTGTAAGCCGCGCTGCGCGTCGTCGTCGGACGACGAGAAGCCCTT
CCCGCTGGGCAAGCCACGCATCTCCTCCGTCACCGACTCGGACTCCAcgc
cgtcgtcgccgcgcgcctccgtgcgcgccgaccgctcagcctcgccgccg
ctgcgccgcAAGCACCCGGACGTGGGCGTGCATCCGCCGGGGCCCTCCAC
GCCGTCGGACGATGACCACGACGGCGacgaccacaacgacgaccaccacg
acaacgacgacaacgacgacGACAACGCCAGCACGTACAGCCACGCGTCC
GTGCTCAACCTGGACGAGCTGGACGATGACCACCTGCTGGGCGCGCTGCG
TCTGCGCCGCCCGACGCTACGCCTGTCGCGCGCGCGcaaaaacaacaaca
acaacatcatcaacatcaacatcaaGCCCAGCGGCCGCCGCGCGGTGGTG
CTGGCGTGCAACGAGTTCCAGCCGCACAACCGGCTGCAACCGCTGTTCGA
ACGCGCGTTGCACGCGTTGGTAGACGCCGTGGACGCCGACGCGCTGTCGG
CCAGCGCGGCGGTGGCGTCGTTCCGAGCGTTCTCGCCGCTGTTCACCAGC
ACGGAACGCACGGTGGTGGCGCAGCTGTTCCGCAACGTGTGCGCGCAGCT
ACGGCGCGAGGCGCCCACACCGTGGCGCTCGCCGCTGTGCAGCGAGACCA
CGCGCGTGGCGTACCCGCCCGGCGTGGACGAAGCGCTGCTGCGCGCCGTC
ATGTACGGCGCGCACATCCTGCCCGCGGCCGGCGCCGAGACCATCCTGAT
CCGGCTGGCGGGCGCGTACCACCGCGAGCAGCTGCGCAAGCGGTGCTCCA
AGTGGCATCGCGTGATGGTGCCGCTGTCGTTCGCCATGACGCTGACAGCG
TTGCTGGCGGCGCTGTCGAGGCTGGAGTGCTCGCCGTCGTTCCGTAGGCT
GCGCAGCCGCGCCGCCACCAGCCGCGCGGCGGAGCCGCACGCGGTGGTGG
CGGTCAAGGTGAACTACGACGGCGCGCGGCTGGCGTTCGACGTGTCGCTG
CATGGCGAGGCGCCCTGTACGGTGCTGTTCCGGAAACCGCGGCTGATGGC
GGCGCGCAAGTTGTGCGACTTTGACGCGCTGGTCAGCGAGATCGGCGGCG
TCATCAGCGAGTTTGGGCAGCACGTGAGCGCGGGCGAGGCGTGCTAA

protein sequence of Ggra3740.t1

>Ggra3740.t1 ID=Ggra3740.t1|Name=Ggra3740.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=449bp
MGAVTIRHPLPRIAALSAVPTIRSITGIDVCPPAPSPLPPLLPPPPPPHM
SACKPRCASSSDDEKPFPLGKPRISSVTDSDSTPSSPRASVRADRSASPP
LRRKHPDVGVHPPGPSTPSDDDHDGDDHNDDHHDNDDNDDDNASTYSHAS
VLNLDELDDDHLLGALRLRRPTLRLSRARKNNNNNIININIKPSGRRAVV
LACNEFQPHNRLQPLFERALHALVDAVDADALSASAAVASFRAFSPLFTS
TERTVVAQLFRNVCAQLRREAPTPWRSPLCSETTRVAYPPGVDEALLRAV
MYGAHILPAAGAETILIRLAGAYHREQLRKRCSKWHRVMVPLSFAMTLTA
LLAALSRLECSPSFRRLRSRAATSRAAEPHAVVAVKVNYDGARLAFDVSL
HGEAPCTVLFRKPRLMAARKLCDFDALVSEIGGVISEFGQHVSAGEAC*

mRNA from alignment at tig00000850_pilon:1278704..1280050+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3740.t1 ID=Ggra3740.t1|Name=Ggra3740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000850_pilon:1278704..1280050+ (Gracilaria gracilis GNS1m male)
ATGGGAGCCGTCACCATCCGACACCCGCTGCCGCGGATAGCGGCGCTTTC
CGCCGTGCCCACCATTCGTTCCATCACGGGCATCGACGTCTGCccgccgg
cgccgtcgccgctgccgccgctgctgccgccgccgccgccgccgcACATG
AGCGCGTGTAAGCCGCGCTGCGCGTCGTCGTCGGACGACGAGAAGCCCTT
CCCGCTGGGCAAGCCACGCATCTCCTCCGTCACCGACTCGGACTCCAcgc
cgtcgtcgccgcgcgcctccgtgcgcgccgaccgctcagcctcgccgccg
ctgcgccgcAAGCACCCGGACGTGGGCGTGCATCCGCCGGGGCCCTCCAC
GCCGTCGGACGATGACCACGACGGCGacgaccacaacgacgaccaccacg
acaacgacgacaacgacgacGACAACGCCAGCACGTACAGCCACGCGTCC
GTGCTCAACCTGGACGAGCTGGACGATGACCACCTGCTGGGCGCGCTGCG
TCTGCGCCGCCCGACGCTACGCCTGTCGCGCGCGCGcaaaaacaacaaca
acaacatcatcaacatcaacatcaaGCCCAGCGGCCGCCGCGCGGTGGTG
CTGGCGTGCAACGAGTTCCAGCCGCACAACCGGCTGCAACCGCTGTTCGA
ACGCGCGTTGCACGCGTTGGTAGACGCCGTGGACGCCGACGCGCTGTCGG
CCAGCGCGGCGGTGGCGTCGTTCCGAGCGTTCTCGCCGCTGTTCACCAGC
ACGGAACGCACGGTGGTGGCGCAGCTGTTCCGCAACGTGTGCGCGCAGCT
ACGGCGCGAGGCGCCCACACCGTGGCGCTCGCCGCTGTGCAGCGAGACCA
CGCGCGTGGCGTACCCGCCCGGCGTGGACGAAGCGCTGCTGCGCGCCGTC
ATGTACGGCGCGCACATCCTGCCCGCGGCCGGCGCCGAGACCATCCTGAT
CCGGCTGGCGGGCGCGTACCACCGCGAGCAGCTGCGCAAGCGGTGCTCCA
AGTGGCATCGCGTGATGGTGCCGCTGTCGTTCGCCATGACGCTGACAGCG
TTGCTGGCGGCGCTGTCGAGGCTGGAGTGCTCGCCGTCGTTCCGTAGGCT
GCGCAGCCGCGCCGCCACCAGCCGCGCGGCGGAGCCGCACGCGGTGGTGG
CGGTCAAGGTGAACTACGACGGCGCGCGGCTGGCGTTCGACGTGTCGCTG
CATGGCGAGGCGCCCTGTACGGTGCTGTTCCGGAAACCGCGGCTGATGGC
GGCGCGCAAGTTGTGCGACTTTGACGCGCTGGTCAGCGAGATCGGCGGCG
TCATCAGCGAGTTTGGGCAGCACGTGAGCGCGGGCGAGGCGTGCTAA

Coding sequence (CDS) from alignment at tig00000850_pilon:1278704..1280050+

>Ggra3740.t1 ID=Ggra3740.t1|Name=Ggra3740.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00000850_pilon:1278704..1280050+ (Gracilaria gracilis GNS1m male)
ATGGGAGCCGTCACCATCCGACACCCGCTGCCGCGGATAGCGGCGCTTTC
CGCCGTGCCCACCATTCGTTCCATCACGGGCATCGACGTCTGCccgccgg
cgccgtcgccgctgccgccgctgctgccgccgccgccgccgccgcACATG
AGCGCGTGTAAGCCGCGCTGCGCGTCGTCGTCGGACGACGAGAAGCCCTT
CCCGCTGGGCAAGCCACGCATCTCCTCCGTCACCGACTCGGACTCCAcgc
cgtcgtcgccgcgcgcctccgtgcgcgccgaccgctcagcctcgccgccg
ctgcgccgcAAGCACCCGGACGTGGGCGTGCATCCGCCGGGGCCCTCCAC
GCCGTCGGACGATGACCACGACGGCGacgaccacaacgacgaccaccacg
acaacgacgacaacgacgacGACAACGCCAGCACGTACAGCCACGCGTCC
GTGCTCAACCTGGACGAGCTGGACGATGACCACCTGCTGGGCGCGCTGCG
TCTGCGCCGCCCGACGCTACGCCTGTCGCGCGCGCGcaaaaacaacaaca
acaacatcatcaacatcaacatcaaGCCCAGCGGCCGCCGCGCGGTGGTG
CTGGCGTGCAACGAGTTCCAGCCGCACAACCGGCTGCAACCGCTGTTCGA
ACGCGCGTTGCACGCGTTGGTAGACGCCGTGGACGCCGACGCGCTGTCGG
CCAGCGCGGCGGTGGCGTCGTTCCGAGCGTTCTCGCCGCTGTTCACCAGC
ACGGAACGCACGGTGGTGGCGCAGCTGTTCCGCAACGTGTGCGCGCAGCT
ACGGCGCGAGGCGCCCACACCGTGGCGCTCGCCGCTGTGCAGCGAGACCA
CGCGCGTGGCGTACCCGCCCGGCGTGGACGAAGCGCTGCTGCGCGCCGTC
ATGTACGGCGCGCACATCCTGCCCGCGGCCGGCGCCGAGACCATCCTGAT
CCGGCTGGCGGGCGCGTACCACCGCGAGCAGCTGCGCAAGCGGTGCTCCA
AGTGGCATCGCGTGATGGTGCCGCTGTCGTTCGCCATGACGCTGACAGCG
TTGCTGGCGGCGCTGTCGAGGCTGGAGTGCTCGCCGTCGTTCCGTAGGCT
GCGCAGCCGCGCCGCCACCAGCCGCGCGGCGGAGCCGCACGCGGTGGTGG
CGGTCAAGGTGAACTACGACGGCGCGCGGCTGGCGTTCGACGTGTCGCTG
CATGGCGAGGCGCCCTGTACGGTGCTGTTCCGGAAACCGCGGCTGATGGC
GGCGCGCAAGTTGTGCGACTTTGACGCGCTGGTCAGCGAGATCGGCGGCG
TCATCAGCGAGTTTGGGCAGCACGTGAGCGCGGGCGAGGCGTGCTAA