Ggra3854.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3854.t1
Unique NameGgra3854.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000850_piloncontigtig00000850_pilon:2235857..2236910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709120.1
Preferred nameSTRAP
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K13137
KEGG Pathwayko03013,map03013
KEGG ModuleM00426
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001894,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007586,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010632,GO:0010633,GO:0010646,GO:0010648,GO:0010669,GO:0010717,GO:0010719,GO:0016043,GO:0016070,GO:0016071,GO:0017015,GO:0019219,GO:0019220,GO:0019222,GO:0022600,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023057,GO:0030277,GO:0030334,GO:0030336,GO:0030512,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032991,GO:0034622,GO:0034641,GO:0034719,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045892,GO:0045934,GO:0045936,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051270,GO:0051271,GO:0060249,GO:0060255,GO:0060393,GO:0060394,GO:0060429,GO:0060562,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0120114,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1903844,GO:1903845,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2001141
Evalue4.58e-81
EggNOG OGsKOG0278@1|root,KOG0278@2759|Eukaryota
Descriptionnegative regulation of transforming growth factor beta receptor signaling pathway
COG categoryE
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3854Ggra3854Gracilaria gracilis GNS1m malegenetig00000850_pilon 2235857..2236910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3854.t1Ggra3854.t1Gracilaria gracilis GNS1m malepolypeptidetig00000850_pilon 2235857..2236910 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3854.t1.start1Ggra3854.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000850_pilon 2235857..2235859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3854.t1.CDS1Ggra3854.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2235857..2236767 +
Ggra3854.t1.CDS2Ggra3854.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000850_pilon 2236877..2236910 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3854.t1.exon1Ggra3854.t1.exon1Gracilaria gracilis GNS1m maleexontig00000850_pilon 2235857..2236767 +
Ggra3854.t1.exon2Ggra3854.t1.exon2Gracilaria gracilis GNS1m maleexontig00000850_pilon 2236877..2236910 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3854.t1.intron1Ggra3854.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000850_pilon 2236768..2236876 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3854.t1.stop1Ggra3854.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000850_pilon 2236908..2236910 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3854.t1 ID=Ggra3854.t1|Name=Ggra3854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=315bp
MPMVCPGHNRGIVELQYSPPGSEGVFLMSACLDGTPMLRDGISGDWIGSF
VGHKGAVWGACISSDASLAATAGADFTARLWDAITGQCKTVLTQKHICKS
VAFSSDSSRLLTAGNTSSINIYDVAACEDTPVALLTPKDSTNAKHSVKLA
RYVNSGTNTVVSAISSAQEEKVLSIWDVRSGNVERKLPLGSACKSGELTS
DGKILTVTGADSTLSVYDLDKMERIMQIGLPEHTESASLRYPNMDMMVTG
GQDLTVRRFEVAEDSTTMEKEANRGHHGPVWVVRFAPDGESYASGSDDGT
IRLWKTTVDPSLVA*
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spliced messenger RNA

>Ggra3854.t1 ID=Ggra3854.t1|Name=Ggra3854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000850_pilon:2235857..2236910+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCATGGTATGTCCAGGTCATAATCGCGGCATCGTCGAGCTTCAGTA
CTCTCCACCTGGGTCAGAGGGAGTTTTTCTAATGTCTGCTTGCCTCGATG
GCACCCCGATGTTACGAGATGGAATATCTGGTGATTGGATTGGTTCCTTT
GTTGGTCACAAGGGGGCAGTTTGGGGCGCTTGTATATCATCCGACGCTTC
CTTGGCGGCTACTGCGGGCGCTGATTTCACTGCACGCCTTTGGGATGCTA
TAACAGGTCAATGCAAAACTGTTCTAACTCAAAAGCACATTTGCAAATCC
GTTGCTTTTTCGTCAGATAGCTCGAGACTGCTCACAGCAGGTAATACCAG
TTCCATCAATATCTACGATGTAGCCGCATGTGAGGATACTCCGGTTGCAT
TGTTAACACCAAAAGATTCTACCAATGCCAAGCACAGCGTCAAACTGGCG
AGATACGTTAACTCGGGCACGAACACAGTCGTTTCTGCGATAAGCAGCGC
CCAAGAAGAGAAGGTGTTGTCTATATGGGATGTTAGGTCAGGAAATGTGG
AACGCAAATTGCCGCTGGGCTCTGCTTGTAAATCTGGTGAGCTAACTTCG
GACGGCAAGATCCTCACTGTGACTGGTGCCGATTCAACTTTGTCAGTTTA
TGACCTTGACAAGATGGAACGTATAATGCAGATAGGTCTGCCGGAGCATA
CAGAGAGCGCAAGTCTTCGGTACCCGAATATGGACATGATGGTCACCGGG
GGCCAAGATCTGACGGTCAGAAGGTTTGAAGTAGCAGAGGACAGCACAAC
TATGGAGAAAGAGGCTAACAGAGGTCATCATGGGCCAGTTTGGGTTGTTC
GTTTCGCACCTGATGGAGAGAGCTACGCAAGTGGTTCGGATGATGGTACA
ATTCGCTTATGGAAAACCACGGTCGATCCATCCCTAGTCGCTTGA
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protein sequence of Ggra3854.t1

>Ggra3854.t1 ID=Ggra3854.t1|Name=Ggra3854.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=315bp
MPMVCPGHNRGIVELQYSPPGSEGVFLMSACLDGTPMLRDGISGDWIGSF
VGHKGAVWGACISSDASLAATAGADFTARLWDAITGQCKTVLTQKHICKS
VAFSSDSSRLLTAGNTSSINIYDVAACEDTPVALLTPKDSTNAKHSVKLA
RYVNSGTNTVVSAISSAQEEKVLSIWDVRSGNVERKLPLGSACKSGELTS
DGKILTVTGADSTLSVYDLDKMERIMQIGLPEHTESASLRYPNMDMMVTG
GQDLTVRRFEVAEDSTTMEKEANRGHHGPVWVVRFAPDGESYASGSDDGT
IRLWKTTVDPSLVA*
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mRNA from alignment at tig00000850_pilon:2235857..2236910+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3854.t1 ID=Ggra3854.t1|Name=Ggra3854.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1054bp|location=Sequence derived from alignment at tig00000850_pilon:2235857..2236910+ (Gracilaria gracilis GNS1m male)
ATGCCCATGGTATGTCCAGGTCATAATCGCGGCATCGTCGAGCTTCAGTA
CTCTCCACCTGGGTCAGAGGGAGTTTTTCTAATGTCTGCTTGCCTCGATG
GCACCCCGATGTTACGAGATGGAATATCTGGTGATTGGATTGGTTCCTTT
GTTGGTCACAAGGGGGCAGTTTGGGGCGCTTGTATATCATCCGACGCTTC
CTTGGCGGCTACTGCGGGCGCTGATTTCACTGCACGCCTTTGGGATGCTA
TAACAGGTCAATGCAAAACTGTTCTAACTCAAAAGCACATTTGCAAATCC
GTTGCTTTTTCGTCAGATAGCTCGAGACTGCTCACAGCAGGTAATACCAG
TTCCATCAATATCTACGATGTAGCCGCATGTGAGGATACTCCGGTTGCAT
TGTTAACACCAAAAGATTCTACCAATGCCAAGCACAGCGTCAAACTGGCG
AGATACGTTAACTCGGGCACGAACACAGTCGTTTCTGCGATAAGCAGCGC
CCAAGAAGAGAAGGTGTTGTCTATATGGGATGTTAGGTCAGGAAATGTGG
AACGCAAATTGCCGCTGGGCTCTGCTTGTAAATCTGGTGAGCTAACTTCG
GACGGCAAGATCCTCACTGTGACTGGTGCCGATTCAACTTTGTCAGTTTA
TGACCTTGACAAGATGGAACGTATAATGCAGATAGGTCTGCCGGAGCATA
CAGAGAGCGCAAGTCTTCGGTACCCGAATATGGACATGATGGTCACCGGG
GGCCAAGATCTGACGGTCAGAAGGTTTGAAGTAGCAGAGGACAGCACAAC
TATGGAGAAAGAGGCTAACAGAGGTCATCATGGGCCAGTTTGGGTTGTTC
GTTTCGCACCTGATGGAGAGAGCTACGCAAGTGGTTCGGATGATGGTACA
ATTCGCTTATGGTAGGTTGCTCGCAAGCGTTTTAGAAGGTATTGGGCGTA
ACATGTGTAACATGTATTCGTTAGTTACTAACTTGTTATTTACTGCGATA
TGATAACCAATCATTTCTAGGAAAACCACGGTCGATCCATCCCTAGTCGC
TTGA
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Coding sequence (CDS) from alignment at tig00000850_pilon:2235857..2236910+

>Ggra3854.t1 ID=Ggra3854.t1|Name=Ggra3854.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=945bp|location=Sequence derived from alignment at tig00000850_pilon:2235857..2236910+ (Gracilaria gracilis GNS1m male)
ATGCCCATGGTATGTCCAGGTCATAATCGCGGCATCGTCGAGCTTCAGTA
CTCTCCACCTGGGTCAGAGGGAGTTTTTCTAATGTCTGCTTGCCTCGATG
GCACCCCGATGTTACGAGATGGAATATCTGGTGATTGGATTGGTTCCTTT
GTTGGTCACAAGGGGGCAGTTTGGGGCGCTTGTATATCATCCGACGCTTC
CTTGGCGGCTACTGCGGGCGCTGATTTCACTGCACGCCTTTGGGATGCTA
TAACAGGTCAATGCAAAACTGTTCTAACTCAAAAGCACATTTGCAAATCC
GTTGCTTTTTCGTCAGATAGCTCGAGACTGCTCACAGCAGGTAATACCAG
TTCCATCAATATCTACGATGTAGCCGCATGTGAGGATACTCCGGTTGCAT
TGTTAACACCAAAAGATTCTACCAATGCCAAGCACAGCGTCAAACTGGCG
AGATACGTTAACTCGGGCACGAACACAGTCGTTTCTGCGATAAGCAGCGC
CCAAGAAGAGAAGGTGTTGTCTATATGGGATGTTAGGTCAGGAAATGTGG
AACGCAAATTGCCGCTGGGCTCTGCTTGTAAATCTGGTGAGCTAACTTCG
GACGGCAAGATCCTCACTGTGACTGGTGCCGATTCAACTTTGTCAGTTTA
TGACCTTGACAAGATGGAACGTATAATGCAGATAGGTCTGCCGGAGCATA
CAGAGAGCGCAAGTCTTCGGTACCCGAATATGGACATGATGGTCACCGGG
GGCCAAGATCTGACGGTCAGAAGGTTTGAAGTAGCAGAGGACAGCACAAC
TATGGAGAAAGAGGCTAACAGAGGTCATCATGGGCCAGTTTGGGTTGTTC
GTTTCGCACCTGATGGAGAGAGCTACGCAAGTGGTTCGGATGATGGTACA
ATTCGCTTATGGAAAACCACGGTCGATCCATCCCTAGTCGCTTGA
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