Ggra1507.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1507.t1
Unique NameGgra1507.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:278883..279974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707112.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
GOsGO:0000064,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006839,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009507,GO:0009536,GO:0015075,GO:0015171,GO:0015179,GO:0015238,GO:0015318,GO:0015711,GO:0015807,GO:0015822,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0098655,GO:0098656,GO:1902475,GO:1903352,GO:1903825,GO:1905039
Evalue2.8e-109
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1507Ggra1507Gracilaria gracilis GNS1m malegenetig00000844_pilon 278883..279974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1507.t1Ggra1507.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 278883..279974 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1507.t1.stop1Ggra1507.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 278883..278885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1507.t1.CDS1Ggra1507.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 278883..279109 -
Ggra1507.t1.CDS2Ggra1507.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 279196..279778 -
Ggra1507.t1.CDS3Ggra1507.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 279867..279974 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1507.t1.exon1Ggra1507.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 278883..279109 -
Ggra1507.t1.exon2Ggra1507.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 279196..279778 -
Ggra1507.t1.exon3Ggra1507.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 279867..279974 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1507.t1.intron1Ggra1507.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 279110..279195 -
Ggra1507.t1.intron2Ggra1507.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 279779..279866 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1507.t1.start1Ggra1507.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 279972..279974 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1507.t1 ID=Ggra1507.t1|Name=Ggra1507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp
MTAQQEDKLVANSPASPPSLAVAKELFAGTIGGTAQICVGHPFDTVKVKL
QSMKPPKPGEPPIYTGAMDVVRKVVSREGVRGLFAGIQAPLPFVAVFNAT
LFAANGTMRRVLGRGRSEDQLSIPEIGLAGVGAGAAVSFVACPTELVKCR
LQAQPGAFAGAIDCTRQVVANRGMSGLFTGMQATLVRELPGNALYFMTYV
GTQRCLIPEGGTMKDLTSWHHLFAGGMAGLAFWMPCYPMDLCKTLIQTDS
ETNPKYNGFLDCVRKVVRAEGVRGLYKGIGPCLARAFPANAVTLLAYEWT
KGILG*
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spliced messenger RNA

>Ggra1507.t1 ID=Ggra1507.t1|Name=Ggra1507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000844_pilon:278883..279974- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCGCAGCAGGAGGACAAACTGGTTGCTAACTCTCCGGCTTCGCC
GCCTTCCCTGGCGGTCGCCAAGGAGTTGTTTGCTGGTACCATCGGCGGAA
CTGCACAGATATGCGTCGGCCATCCGTTCGATACCGTCAAGGTTAAGCTG
CAAAGCATGAAGCCACCCAAGCCTGGTGAGCCACCCATATACACGGGTGC
CATGGACGTCGTTAGAAAGGTCGTCTCGCGAGAAGGCGTACGTGGGTTGT
TTGCAGGCATTCAAGCACCGCTTCCGTTCGTCGCCGTGTTCAACGCCACC
CTGTTTGCCGCGAATGGCACCATGAGACGAGTGCTCGGCAGGGGAAGATC
AGAGGATCAATTGTCCATCCCCGAGATTGGCTTGGCGGGCGTCGGTGCTG
GCGCGGCTGTTAGCTTTGTCGCCTGTCCTACTGAGCTTGTCAAGTGTAGA
CTTCAAGCGCAGCCGGGCGCTTTTGCGGGCGCTATTGACTGTACGAGACA
GGTTGTTGCTAACAGAGGCATGAGTGGCTTGTTTACGGGTATGCAGGCCA
CCTTGGTTCGCGAGCTTCCGGGAAATGCGTTGTACTTTATGACCTATGTG
GGTACCCAAAGATGTTTGATTCCTGAAGGTGGCACTATGAAGGACCTGAC
CTCGTGGCATCATCTGTTTGCCGGTGGTATGGCAGGACTGGCATTTTGGA
TGCCTTGCTATCCTATGGATCTGTGCAAGACATTGATTCAAACTGACAGT
GAAACCAATCCAAAGTATAACGGTTTCCTCGACTGCGTTCGCAAGGTGGT
GAGGGCTGAAGGAGTAAGAGGGTTATACAAAGGTATTGGCCCTTGCCTCG
CACGAGCTTTCCCTGCTAACGCCGTCACTCTGCTCGCGTATGAATGGACT
AAGGGAATTCTTGGATGA
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protein sequence of Ggra1507.t1

>Ggra1507.t1 ID=Ggra1507.t1|Name=Ggra1507.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=306bp
MTAQQEDKLVANSPASPPSLAVAKELFAGTIGGTAQICVGHPFDTVKVKL
QSMKPPKPGEPPIYTGAMDVVRKVVSREGVRGLFAGIQAPLPFVAVFNAT
LFAANGTMRRVLGRGRSEDQLSIPEIGLAGVGAGAAVSFVACPTELVKCR
LQAQPGAFAGAIDCTRQVVANRGMSGLFTGMQATLVRELPGNALYFMTYV
GTQRCLIPEGGTMKDLTSWHHLFAGGMAGLAFWMPCYPMDLCKTLIQTDS
ETNPKYNGFLDCVRKVVRAEGVRGLYKGIGPCLARAFPANAVTLLAYEWT
KGILG*
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mRNA from alignment at tig00000844_pilon:278883..279974-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1507.t1 ID=Ggra1507.t1|Name=Ggra1507.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000844_pilon:278883..279974- (Gracilaria gracilis GNS1m male)
ATGACCGCGCAGCAGGAGGACAAACTGGTTGCTAACTCTCCGGCTTCGCC
GCCTTCCCTGGCGGTCGCCAAGGAGTTGTTTGCTGGTACCATCGGCGGAA
CTGCACAGGTGAGTTCACCACATCATTCATTCTTCGCATTGCCTTCCGGT
TTCTGTGCTTGTTTGTCTCCATGCTCACACGTTCTGTTCTTTGTAGATAT
GCGTCGGCCATCCGTTCGATACCGTCAAGGTTAAGCTGCAAAGCATGAAG
CCACCCAAGCCTGGTGAGCCACCCATATACACGGGTGCCATGGACGTCGT
TAGAAAGGTCGTCTCGCGAGAAGGCGTACGTGGGTTGTTTGCAGGCATTC
AAGCACCGCTTCCGTTCGTCGCCGTGTTCAACGCCACCCTGTTTGCCGCG
AATGGCACCATGAGACGAGTGCTCGGCAGGGGAAGATCAGAGGATCAATT
GTCCATCCCCGAGATTGGCTTGGCGGGCGTCGGTGCTGGCGCGGCTGTTA
GCTTTGTCGCCTGTCCTACTGAGCTTGTCAAGTGTAGACTTCAAGCGCAG
CCGGGCGCTTTTGCGGGCGCTATTGACTGTACGAGACAGGTTGTTGCTAA
CAGAGGCATGAGTGGCTTGTTTACGGGTATGCAGGCCACCTTGGTTCGCG
AGCTTCCGGGAAATGCGTTGTACTTTATGACCTATGTGGGTACCCAAAGA
TGTTTGATTCCTGAAGGTGGCACTATGAAGGACCTGACCTCGTGGCATCA
TCTGTTTGCCGGTGGTATGGCAGGACTGGGTAAGTGGCTGTTTCTACTTT
GTATTTGCTCTTCTTGACAAGCATAGAGTAACTGACCAATAGGCTTATTT
CTGTTGTGGCTTCAGCATTTTGGATGCCTTGCTATCCTATGGATCTGTGC
AAGACATTGATTCAAACTGACAGTGAAACCAATCCAAAGTATAACGGTTT
CCTCGACTGCGTTCGCAAGGTGGTGAGGGCTGAAGGAGTAAGAGGGTTAT
ACAAAGGTATTGGCCCTTGCCTCGCACGAGCTTTCCCTGCTAACGCCGTC
ACTCTGCTCGCGTATGAATGGACTAAGGGAATTCTTGGATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:278883..279974-

>Ggra1507.t1 ID=Ggra1507.t1|Name=Ggra1507.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000844_pilon:278883..279974- (Gracilaria gracilis GNS1m male)
ATGACCGCGCAGCAGGAGGACAAACTGGTTGCTAACTCTCCGGCTTCGCC
GCCTTCCCTGGCGGTCGCCAAGGAGTTGTTTGCTGGTACCATCGGCGGAA
CTGCACAGATATGCGTCGGCCATCCGTTCGATACCGTCAAGGTTAAGCTG
CAAAGCATGAAGCCACCCAAGCCTGGTGAGCCACCCATATACACGGGTGC
CATGGACGTCGTTAGAAAGGTCGTCTCGCGAGAAGGCGTACGTGGGTTGT
TTGCAGGCATTCAAGCACCGCTTCCGTTCGTCGCCGTGTTCAACGCCACC
CTGTTTGCCGCGAATGGCACCATGAGACGAGTGCTCGGCAGGGGAAGATC
AGAGGATCAATTGTCCATCCCCGAGATTGGCTTGGCGGGCGTCGGTGCTG
GCGCGGCTGTTAGCTTTGTCGCCTGTCCTACTGAGCTTGTCAAGTGTAGA
CTTCAAGCGCAGCCGGGCGCTTTTGCGGGCGCTATTGACTGTACGAGACA
GGTTGTTGCTAACAGAGGCATGAGTGGCTTGTTTACGGGTATGCAGGCCA
CCTTGGTTCGCGAGCTTCCGGGAAATGCGTTGTACTTTATGACCTATGTG
GGTACCCAAAGATGTTTGATTCCTGAAGGTGGCACTATGAAGGACCTGAC
CTCGTGGCATCATCTGTTTGCCGGTGGTATGGCAGGACTGGCATTTTGGA
TGCCTTGCTATCCTATGGATCTGTGCAAGACATTGATTCAAACTGACAGT
GAAACCAATCCAAAGTATAACGGTTTCCTCGACTGCGTTCGCAAGGTGGT
GAGGGCTGAAGGAGTAAGAGGGTTATACAAAGGTATTGGCCCTTGCCTCG
CACGAGCTTTCCCTGCTAACGCCGTCACTCTGCTCGCGTATGAATGGACT
AAGGGAATTCTTGGATGA
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