Ggra5658.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5658.t1
Unique NameGgra5658.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1278680..1279261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5658Ggra5658Gracilaria gracilis GNS1m malegenetig00000842_pilon 1278680..1279261 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5658.t1.start1Ggra5658.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1278680..1278682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5658.t1.CDS1Ggra5658.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1278680..1279261 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5658.t1.exon1Ggra5658.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1278680..1279261 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5658.t1.stop1Ggra5658.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1279259..1279261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5658.t1Ggra5658.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1278680..1279261 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5658.t1 ID=Ggra5658.t1|Name=Ggra5658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=194bp
MGALCSCLEPPEQRNGNPKVFHHAMFAYESKAVFSDEAKTTQGDHENSLQ
FRQSRERRRPTNLLHIPIVMIQTVSPHRLTPAARRELFQGNGMGSVNSRY
LNTKNPTSRKVCQSSDHCEVDSRTSVKNSDVALSEDIATKDHSMVEKLRS
TSAMIHMMRCERMESKAKMDPKKLLKTVSEQCSSTGRTFCSYQ*
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spliced messenger RNA

>Ggra5658.t1 ID=Ggra5658.t1|Name=Ggra5658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000842_pilon:1278680..1279261+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCACTTTGTAGCTGTTTGGAACCACCGGAGCAGAGGAATGGCAA
TCCAAAAGTCTTTCATCACGCTATGTTTGCGTATGAGTCTAAAGCCGTGT
TTTCAGATGAAGCAAAAACGACTCAAGGTGATCACGAGAATAGTCTTCAG
TTTCGGCAATCACGCGAAAGAAGGCGCCCAACGAATCTTCTTCACATTCC
TATCGTGATGATTCAAACTGTATCCCCGCATAGACTTACTCCCGCAGCGC
GTCGCGAACTTTTTCAAGGCAACGGCATGGGATCGGTGAATTCTCGTTAC
TTGAACACAAAAAACCCAACGAGCAGAAAGGTCTGCCAGAGCTCAGACCA
TTGTGAGGTCGATTCTCGTACCTCAGTCAAGAACAGTGATGTCGCTCTGT
CTGAAGATATTGCCACCAAAGACCATAGCATGGTTGAGAAACTCCGCTCC
ACGTCTGCTATGATCCACATGATGCGGTGCGAAAGGATGGAAAGCAAAGC
GAAGATGGATCCCAAGAAACTACTGAAAACTGTTTCCGAACAGTGTTCTT
CTACCGGTCGTACATTCTGTTCCTATCAGTGA
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protein sequence of Ggra5658.t1

>Ggra5658.t1 ID=Ggra5658.t1|Name=Ggra5658.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MGALCSCLEPPEQRNGNPKVFHHAMFAYESKAVFSDEAKTTQGDHENSLQ
FRQSRERRRPTNLLHIPIVMIQTVSPHRLTPAARRELFQGNGMGSVNSRY
LNTKNPTSRKVCQSSDHCEVDSRTSVKNSDVALSEDIATKDHSMVEKLRS
TSAMIHMMRCERMESKAKMDPKKLLKTVSEQCSSTGRTFCSYQ*
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mRNA from alignment at tig00000842_pilon:1278680..1279261+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5658.t1 ID=Ggra5658.t1|Name=Ggra5658.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000842_pilon:1278680..1279261+ (Gracilaria gracilis GNS1m male)
ATGGGTGCACTTTGTAGCTGTTTGGAACCACCGGAGCAGAGGAATGGCAA
TCCAAAAGTCTTTCATCACGCTATGTTTGCGTATGAGTCTAAAGCCGTGT
TTTCAGATGAAGCAAAAACGACTCAAGGTGATCACGAGAATAGTCTTCAG
TTTCGGCAATCACGCGAAAGAAGGCGCCCAACGAATCTTCTTCACATTCC
TATCGTGATGATTCAAACTGTATCCCCGCATAGACTTACTCCCGCAGCGC
GTCGCGAACTTTTTCAAGGCAACGGCATGGGATCGGTGAATTCTCGTTAC
TTGAACACAAAAAACCCAACGAGCAGAAAGGTCTGCCAGAGCTCAGACCA
TTGTGAGGTCGATTCTCGTACCTCAGTCAAGAACAGTGATGTCGCTCTGT
CTGAAGATATTGCCACCAAAGACCATAGCATGGTTGAGAAACTCCGCTCC
ACGTCTGCTATGATCCACATGATGCGGTGCGAAAGGATGGAAAGCAAAGC
GAAGATGGATCCCAAGAAACTACTGAAAACTGTTTCCGAACAGTGTTCTT
CTACCGGTCGTACATTCTGTTCCTATCAGTGA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1278680..1279261+

>Ggra5658.t1 ID=Ggra5658.t1|Name=Ggra5658.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000842_pilon:1278680..1279261+ (Gracilaria gracilis GNS1m male)
ATGGGTGCACTTTGTAGCTGTTTGGAACCACCGGAGCAGAGGAATGGCAA
TCCAAAAGTCTTTCATCACGCTATGTTTGCGTATGAGTCTAAAGCCGTGT
TTTCAGATGAAGCAAAAACGACTCAAGGTGATCACGAGAATAGTCTTCAG
TTTCGGCAATCACGCGAAAGAAGGCGCCCAACGAATCTTCTTCACATTCC
TATCGTGATGATTCAAACTGTATCCCCGCATAGACTTACTCCCGCAGCGC
GTCGCGAACTTTTTCAAGGCAACGGCATGGGATCGGTGAATTCTCGTTAC
TTGAACACAAAAAACCCAACGAGCAGAAAGGTCTGCCAGAGCTCAGACCA
TTGTGAGGTCGATTCTCGTACCTCAGTCAAGAACAGTGATGTCGCTCTGT
CTGAAGATATTGCCACCAAAGACCATAGCATGGTTGAGAAACTCCGCTCC
ACGTCTGCTATGATCCACATGATGCGGTGCGAAAGGATGGAAAGCAAAGC
GAAGATGGATCCCAAGAAACTACTGAAAACTGTTTCCGAACAGTGTTCTT
CTACCGGTCGTACATTCTGTTCCTATCAGTGA
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