Ggra5632.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5632.t1
Unique NameGgra5632.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1206755..1208125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008873378.1
Preferred nameHCCS
PFAMsCyto_heme_lyase
Max annot lvl2759|Eukaryota
KEGG rclassRC00727,RC02130
KEGG koko:K01764
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
Evalue2.13e-67
EggNOG OGsKOG3996@1|root,KOG3996@2759|Eukaryota
EC4.4.1.17
Descriptionholocytochrome-c synthase activity
COG categoryH
BiGG ReactioniRC1080.CRv4_Au5_s12_g3580_t1
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5632Ggra5632Gracilaria gracilis GNS1m malegenetig00000842_pilon 1206755..1208125 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5632.t1.start1Ggra5632.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1206755..1206757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5632.t1.CDS1Ggra5632.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1206755..1208125 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5632.t1.exon1Ggra5632.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1206755..1208125 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5632.t1.stop1Ggra5632.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1208123..1208125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5632.t1Ggra5632.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1206755..1208125 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5632.t1 ID=Ggra5632.t1|Name=Ggra5632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MGSTLSTASFAEAQCPVDHHNMSDDQIRAFMSSSNSVHPAKTSPAQQTEH
EQSKCPVDHKNMSKEQIEAYMSKHRTADDSPQPTDHTASSPSQTVYDVYG
QEIDRANMMPATPNQLPAPGQKQPLPTDREKSTIPKSGQNGQTWTYPSPQ
MFYNALKRKGKSDGVNERDMLAVVSVHNTMNERTWKQVMEWERKYHCHQC
EQPKLKNFLGRPNDLSPAAWFRTTFRGYPMPFDRHDWVVDRCGEQEVRYV
IDYYYRAGPDPIEIHVRPAVDSPTAVFDRLRNSAQLFRDYLTGVTTAAQQ
DPEAVSQRELNAVVSGERLDSSEFDFLSTLSSKAIREIADDVQQRCEKVS
RAFAEAGDDPVKMEQANVSVNFCMAKSICKRQAADFMSALESGEGEGPAY
EKMTACLNRFHIMARRTLLEEAGVKQSGPEFRPGELNSVDPTPRPAVASS
VDQKEQ*
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spliced messenger RNA

>Ggra5632.t1 ID=Ggra5632.t1|Name=Ggra5632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000842_pilon:1206755..1208125+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTCTACGTTAAGCACCGCCTCCTTCGCAGAAGCTCAATGCCCCGT
CGACCATCACAACATGTCCGACGATCAGATCCGCGCATTCATGTCTTCAT
CAAACTCTGTGCACCCAGCAAAAACGTCCCCTGCTCAACAAACAGAACAT
GAACAATCCAAATGCCCAGTTGACCACAAGAACATGTCCAAGGAGCAAAT
TGAAGCATACATGTCCAAACATAGAACAGCAGATGATTCACCACAGCCTA
CCGACCACACTGCATCCAGTCCGAGTCAAACCGTCTATGATGTGTACGGG
CAGGAAATTGATCGAGCCAACATGATGCCGGCCACTCCAAATCAGCTTCC
GGCCCCAGGACAGAAACAACCTCTACCCACGGATCGTGAAAAGTCTACCA
TCCCAAAATCCGGCCAAAACGGACAGACATGGACGTATCCATCGCCCCAA
ATGTTCTACAATGCTCTCAAACGAAAGGGAAAAAGCGACGGCGTTAATGA
GAGAGACATGCTTGCCGTGGTATCGGTACATAACACCATGAACGAGAGAA
CTTGGAAGCAAGTCATGGAATGGGAGCGCAAATACCATTGTCATCAGTGC
GAACAACCCAAGCTCAAGAACTTTTTGGGACGACCGAACGATCTTTCACC
AGCCGCGTGGTTCCGCACTACTTTTCGAGGTTATCCAATGCCTTTTGACC
GCCATGACTGGGTTGTTGATCGTTGCGGTGAGCAGGAAGTGCGATACGTT
ATTGATTACTACTATCGCGCAGGACCTGATCCCATTGAGATCCATGTTCG
TCCTGCGGTGGATTCACCGACGGCCGTCTTCGATAGACTGCGAAATAGCG
CGCAACTCTTTCGGGACTACTTGACGGGTGTAACAACTGCCGCCCAACAG
GATCCTGAAGCTGTTTCGCAACGTGAGCTCAACGCAGTTGTGTCAGGTGA
GCGATTAGATTCGTCCGAATTTGACTTCCTGAGTACGCTTTCGTCTAAAG
CAATACGTGAAATAGCAGATGACGTTCAGCAGCGATGCGAGAAAGTCAGC
CGCGCCTTTGCTGAAGCTGGAGACGATCCTGTCAAGATGGAACAGGCCAA
TGTGTCTGTGAACTTTTGCATGGCAAAATCGATTTGCAAGCGTCAAGCAG
CAGACTTCATGAGCGCGCTCGAAAGCGGGGAAGGCGAGGGTCCGGCGTAC
GAAAAAATGACCGCGTGCTTAAACAGATTCCATATCATGGCAAGAAGAAC
ACTGCTTGAAGAAGCCGGAGTCAAGCAATCTGGACCAGAATTCCGGCCAG
GTGAACTGAATTCCGTTGACCCGACACCGCGTCCCGCCGTGGCATCAAGC
GTAGATCAAAAGGAGCAATAA
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protein sequence of Ggra5632.t1

>Ggra5632.t1 ID=Ggra5632.t1|Name=Ggra5632.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MGSTLSTASFAEAQCPVDHHNMSDDQIRAFMSSSNSVHPAKTSPAQQTEH
EQSKCPVDHKNMSKEQIEAYMSKHRTADDSPQPTDHTASSPSQTVYDVYG
QEIDRANMMPATPNQLPAPGQKQPLPTDREKSTIPKSGQNGQTWTYPSPQ
MFYNALKRKGKSDGVNERDMLAVVSVHNTMNERTWKQVMEWERKYHCHQC
EQPKLKNFLGRPNDLSPAAWFRTTFRGYPMPFDRHDWVVDRCGEQEVRYV
IDYYYRAGPDPIEIHVRPAVDSPTAVFDRLRNSAQLFRDYLTGVTTAAQQ
DPEAVSQRELNAVVSGERLDSSEFDFLSTLSSKAIREIADDVQQRCEKVS
RAFAEAGDDPVKMEQANVSVNFCMAKSICKRQAADFMSALESGEGEGPAY
EKMTACLNRFHIMARRTLLEEAGVKQSGPEFRPGELNSVDPTPRPAVASS
VDQKEQ*
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mRNA from alignment at tig00000842_pilon:1206755..1208125+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5632.t1 ID=Ggra5632.t1|Name=Ggra5632.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000842_pilon:1206755..1208125+ (Gracilaria gracilis GNS1m male)
ATGGGTTCTACGTTAAGCACCGCCTCCTTCGCAGAAGCTCAATGCCCCGT
CGACCATCACAACATGTCCGACGATCAGATCCGCGCATTCATGTCTTCAT
CAAACTCTGTGCACCCAGCAAAAACGTCCCCTGCTCAACAAACAGAACAT
GAACAATCCAAATGCCCAGTTGACCACAAGAACATGTCCAAGGAGCAAAT
TGAAGCATACATGTCCAAACATAGAACAGCAGATGATTCACCACAGCCTA
CCGACCACACTGCATCCAGTCCGAGTCAAACCGTCTATGATGTGTACGGG
CAGGAAATTGATCGAGCCAACATGATGCCGGCCACTCCAAATCAGCTTCC
GGCCCCAGGACAGAAACAACCTCTACCCACGGATCGTGAAAAGTCTACCA
TCCCAAAATCCGGCCAAAACGGACAGACATGGACGTATCCATCGCCCCAA
ATGTTCTACAATGCTCTCAAACGAAAGGGAAAAAGCGACGGCGTTAATGA
GAGAGACATGCTTGCCGTGGTATCGGTACATAACACCATGAACGAGAGAA
CTTGGAAGCAAGTCATGGAATGGGAGCGCAAATACCATTGTCATCAGTGC
GAACAACCCAAGCTCAAGAACTTTTTGGGACGACCGAACGATCTTTCACC
AGCCGCGTGGTTCCGCACTACTTTTCGAGGTTATCCAATGCCTTTTGACC
GCCATGACTGGGTTGTTGATCGTTGCGGTGAGCAGGAAGTGCGATACGTT
ATTGATTACTACTATCGCGCAGGACCTGATCCCATTGAGATCCATGTTCG
TCCTGCGGTGGATTCACCGACGGCCGTCTTCGATAGACTGCGAAATAGCG
CGCAACTCTTTCGGGACTACTTGACGGGTGTAACAACTGCCGCCCAACAG
GATCCTGAAGCTGTTTCGCAACGTGAGCTCAACGCAGTTGTGTCAGGTGA
GCGATTAGATTCGTCCGAATTTGACTTCCTGAGTACGCTTTCGTCTAAAG
CAATACGTGAAATAGCAGATGACGTTCAGCAGCGATGCGAGAAAGTCAGC
CGCGCCTTTGCTGAAGCTGGAGACGATCCTGTCAAGATGGAACAGGCCAA
TGTGTCTGTGAACTTTTGCATGGCAAAATCGATTTGCAAGCGTCAAGCAG
CAGACTTCATGAGCGCGCTCGAAAGCGGGGAAGGCGAGGGTCCGGCGTAC
GAAAAAATGACCGCGTGCTTAAACAGATTCCATATCATGGCAAGAAGAAC
ACTGCTTGAAGAAGCCGGAGTCAAGCAATCTGGACCAGAATTCCGGCCAG
GTGAACTGAATTCCGTTGACCCGACACCGCGTCCCGCCGTGGCATCAAGC
GTAGATCAAAAGGAGCAATAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1206755..1208125+

>Ggra5632.t1 ID=Ggra5632.t1|Name=Ggra5632.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000842_pilon:1206755..1208125+ (Gracilaria gracilis GNS1m male)
ATGGGTTCTACGTTAAGCACCGCCTCCTTCGCAGAAGCTCAATGCCCCGT
CGACCATCACAACATGTCCGACGATCAGATCCGCGCATTCATGTCTTCAT
CAAACTCTGTGCACCCAGCAAAAACGTCCCCTGCTCAACAAACAGAACAT
GAACAATCCAAATGCCCAGTTGACCACAAGAACATGTCCAAGGAGCAAAT
TGAAGCATACATGTCCAAACATAGAACAGCAGATGATTCACCACAGCCTA
CCGACCACACTGCATCCAGTCCGAGTCAAACCGTCTATGATGTGTACGGG
CAGGAAATTGATCGAGCCAACATGATGCCGGCCACTCCAAATCAGCTTCC
GGCCCCAGGACAGAAACAACCTCTACCCACGGATCGTGAAAAGTCTACCA
TCCCAAAATCCGGCCAAAACGGACAGACATGGACGTATCCATCGCCCCAA
ATGTTCTACAATGCTCTCAAACGAAAGGGAAAAAGCGACGGCGTTAATGA
GAGAGACATGCTTGCCGTGGTATCGGTACATAACACCATGAACGAGAGAA
CTTGGAAGCAAGTCATGGAATGGGAGCGCAAATACCATTGTCATCAGTGC
GAACAACCCAAGCTCAAGAACTTTTTGGGACGACCGAACGATCTTTCACC
AGCCGCGTGGTTCCGCACTACTTTTCGAGGTTATCCAATGCCTTTTGACC
GCCATGACTGGGTTGTTGATCGTTGCGGTGAGCAGGAAGTGCGATACGTT
ATTGATTACTACTATCGCGCAGGACCTGATCCCATTGAGATCCATGTTCG
TCCTGCGGTGGATTCACCGACGGCCGTCTTCGATAGACTGCGAAATAGCG
CGCAACTCTTTCGGGACTACTTGACGGGTGTAACAACTGCCGCCCAACAG
GATCCTGAAGCTGTTTCGCAACGTGAGCTCAACGCAGTTGTGTCAGGTGA
GCGATTAGATTCGTCCGAATTTGACTTCCTGAGTACGCTTTCGTCTAAAG
CAATACGTGAAATAGCAGATGACGTTCAGCAGCGATGCGAGAAAGTCAGC
CGCGCCTTTGCTGAAGCTGGAGACGATCCTGTCAAGATGGAACAGGCCAA
TGTGTCTGTGAACTTTTGCATGGCAAAATCGATTTGCAAGCGTCAAGCAG
CAGACTTCATGAGCGCGCTCGAAAGCGGGGAAGGCGAGGGTCCGGCGTAC
GAAAAAATGACCGCGTGCTTAAACAGATTCCATATCATGGCAAGAAGAAC
ACTGCTTGAAGAAGCCGGAGTCAAGCAATCTGGACCAGAATTCCGGCCAG
GTGAACTGAATTCCGTTGACCCGACACCGCGTCCCGCCGTGGCATCAAGC
GTAGATCAAAAGGAGCAATAA
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