Ggra5524.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5524.t1
Unique NameGgra5524.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:810808..812333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog144197.XP_008284251.1
Preferred nameSTEAP3
PFAMsF420_oxidored,Ferric_reduct
Max annot lvl33208|Metazoa
KEGG koko:K10142
KEGG TC5.B.6.1.1
KEGG Pathwayko04115,ko04216,map04115,map04216
GOsGO:0000041,GO:0000293,GO:0002790,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006825,GO:0006826,GO:0006887,GO:0008104,GO:0008150,GO:0008152,GO:0008823,GO:0009306,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015677,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0016491,GO:0016722,GO:0016723,GO:0023051,GO:0023056,GO:0030001,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0032940,GO:0033036,GO:0033216,GO:0033572,GO:0034220,GO:0034755,GO:0042802,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046903,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0052851,GO:0055085,GO:0055114,GO:0065007,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0080134,GO:0080135,GO:0097286,GO:0097708,GO:0097734,GO:0098588,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098706,GO:0098711,GO:0098739,GO:0098805,GO:0099587,GO:0140112,GO:1901796,GO:1901798,GO:1902165,GO:1902167,GO:1902229,GO:1902231,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1990182,GO:2001020,GO:2001022,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue1.14e-24
EggNOG OGsCOG2085@1|root,2QRP3@2759|Eukaryota,38EHP@33154|Opisthokonta,3BCDK@33208|Metazoa,3CVBI@33213|Bilateria,47YX6@7711|Chordata,48ZP1@7742|Vertebrata,49Z7K@7898|Actinopterygii
DescriptionSTEAP family member 3, metalloreductase
COG categoryS
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5524Ggra5524Gracilaria gracilis GNS1m malegenetig00000842_pilon 810808..812333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5524.t1Ggra5524.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 810808..812333 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5524.t1.stop1Ggra5524.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 810808..810810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5524.t1.CDS1Ggra5524.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 810808..810957 -
Ggra5524.t1.CDS2Ggra5524.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 811045..811246 -
Ggra5524.t1.CDS3Ggra5524.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 811339..812333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5524.t1.exon1Ggra5524.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 810808..810957 -
Ggra5524.t1.exon2Ggra5524.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 811045..811246 -
Ggra5524.t1.exon3Ggra5524.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 811339..812333 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5524.t1.intron1Ggra5524.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 810958..811044 -
Ggra5524.t1.intron2Ggra5524.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 811247..811338 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5524.t1.start1Ggra5524.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 812331..812333 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5524.t1 ID=Ggra5524.t1|Name=Ggra5524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=449bp
MDTSADNLDTSTRPREHVVVLGNGHFGASLAQHISRTAANTPYFTVSHTS
RRCLDLPVTAAVSQADILILAIPSAAYESLILDITPHLRHDAIVIDVANT
PLSIFRRPKPQIPSTTILSKLLPPTVSVVKAFNTLSANLLTELNERLVPL
PTNITAPFAADRNESVLHRMHSFVTAMGFSPYYMGPLSSSAKQMESLPHV
FFPAYKCTFIVSTIVWAFWLLYSILSTYVIHGSRGEPSRPWDKFPLSSFM
ASTAEASITLFAITFLAGPFTILYKKFAHNVPAWLKNWLNRRKQLGLSAF
VFASAHGIAGAISKSHFDDGWKGQLYFVPGILSYVMFAILAVYSSDQSAT
SLSWAEFSAVFSWLGTAALALGTLHQGLWGLIIHKHRPDPSFWVGGGAIM
PIYWVGIILPLLALALRLTSWMPCFWNTSKPTGVEYCGEVAENRKQTV*
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spliced messenger RNA

>Ggra5524.t1 ID=Ggra5524.t1|Name=Ggra5524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000842_pilon:810808..812333- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACTTCAGCCGACAACCTCGATACGTCCACACGTCCGAGAGAGCA
CGTAGTCGTGCTTGGCAACGGTCATTTCGGAGCCTCTCTTGCCCAACACA
TATCTCGCACAGCCGCCAATACACCATACTTTACCGTCTCGCACACCAGC
CGCAGATGCCTCGACCTTCCTGTCACAGCCGCCGTGTCTCAGGCGGACAT
TCTCATTCTGGCCATCCCGTCAGCTGCTTACGAATCACTCATCCTCGATA
TCACCCCGCATCTCCGTCACGATGCCATTGTTATCGACGTTGCGAACACC
CCGCTCTCCATTTTTCGCCGCCCCAAGCCACAGATTCCGTCTACCACCAT
ATTGAGCAAGCTGCTTCCGCCAACTGTATCTGTCGTGAAGGCGTTCAACA
CGCTATCCGCCAATCTTCTCACGGAGCTCAATGAAAGGTTAGTGCCACTA
CCGACCAATATCACTGCCCCGTTTGCTGCTGATCGAAATGAATCCGTTTT
GCATCGTATGCATTCTTTCGTCACGGCCATGGGTTTCTCGCCGTATTATA
TGGGACCATTGTCATCGTCGGCCAAACAGATGGAATCTCTACCACATGTA
TTCTTCCCGGCATACAAGTGTACCTTCATTGTTTCCACCATAGTGTGGGC
GTTTTGGCTTCTCTACTCCATATTGTCAACGTACGTGATTCATGGTTCTC
GAGGGGAACCCTCACGTCCATGGGATAAATTCCCGTTGTCTAGTTTCATG
GCATCTACGGCTGAGGCATCCATCACTCTGTTCGCCATCACCTTCCTTGC
GGGGCCGTTCACGATTTTGTACAAGAAGTTTGCTCACAACGTACCCGCGT
GGTTGAAGAACTGGTTGAATCGAAGGAAGCAACTTGGACTTTCCGCATTT
GTATTTGCTAGTGCACACGGAATCGCGGGAGCCATATCGAAGAGTCACTT
TGACGACGGTTGGAAAGGGCAGTTGTACTTTGTGCCAGGCATCCTTTCAT
ATGTCATGTTCGCCATTCTTGCAGTGTACAGCTCCGATCAGAGCGCCACC
TCTCTTTCATGGGCTGAGTTTAGTGCTGTCTTTTCTTGGCTTGGTACCGC
GGCCTTGGCCTTAGGAACTCTTCATCAAGGACTTTGGGGACTAATTATTC
ACAAGCATCGTCCAGATCCCAGTTTCTGGGTAGGCGGTGGAGCAATTATG
CCTATTTACTGGGTTGGAATTATACTACCACTTCTGGCCTTGGCTTTGCG
ATTGACTTCGTGGATGCCATGCTTCTGGAACACTTCCAAACCGACAGGAG
TGGAGTATTGTGGGGAAGTGGCGGAAAACCGCAAACAAACTGTTTAG
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protein sequence of Ggra5524.t1

>Ggra5524.t1 ID=Ggra5524.t1|Name=Ggra5524.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=449bp
MDTSADNLDTSTRPREHVVVLGNGHFGASLAQHISRTAANTPYFTVSHTS
RRCLDLPVTAAVSQADILILAIPSAAYESLILDITPHLRHDAIVIDVANT
PLSIFRRPKPQIPSTTILSKLLPPTVSVVKAFNTLSANLLTELNERLVPL
PTNITAPFAADRNESVLHRMHSFVTAMGFSPYYMGPLSSSAKQMESLPHV
FFPAYKCTFIVSTIVWAFWLLYSILSTYVIHGSRGEPSRPWDKFPLSSFM
ASTAEASITLFAITFLAGPFTILYKKFAHNVPAWLKNWLNRRKQLGLSAF
VFASAHGIAGAISKSHFDDGWKGQLYFVPGILSYVMFAILAVYSSDQSAT
SLSWAEFSAVFSWLGTAALALGTLHQGLWGLIIHKHRPDPSFWVGGGAIM
PIYWVGIILPLLALALRLTSWMPCFWNTSKPTGVEYCGEVAENRKQTV*
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mRNA from alignment at tig00000842_pilon:810808..812333-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5524.t1 ID=Ggra5524.t1|Name=Ggra5524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1526bp|location=Sequence derived from alignment at tig00000842_pilon:810808..812333- (Gracilaria gracilis GNS1m male)
ATGGACACTTCAGCCGACAACCTCGATACGTCCACACGTCCGAGAGAGCA
CGTAGTCGTGCTTGGCAACGGTCATTTCGGAGCCTCTCTTGCCCAACACA
TATCTCGCACAGCCGCCAATACACCATACTTTACCGTCTCGCACACCAGC
CGCAGATGCCTCGACCTTCCTGTCACAGCCGCCGTGTCTCAGGCGGACAT
TCTCATTCTGGCCATCCCGTCAGCTGCTTACGAATCACTCATCCTCGATA
TCACCCCGCATCTCCGTCACGATGCCATTGTTATCGACGTTGCGAACACC
CCGCTCTCCATTTTTCGCCGCCCCAAGCCACAGATTCCGTCTACCACCAT
ATTGAGCAAGCTGCTTCCGCCAACTGTATCTGTCGTGAAGGCGTTCAACA
CGCTATCCGCCAATCTTCTCACGGAGCTCAATGAAAGGTTAGTGCCACTA
CCGACCAATATCACTGCCCCGTTTGCTGCTGATCGAAATGAATCCGTTTT
GCATCGTATGCATTCTTTCGTCACGGCCATGGGTTTCTCGCCGTATTATA
TGGGACCATTGTCATCGTCGGCCAAACAGATGGAATCTCTACCACATGTA
TTCTTCCCGGCATACAAGTGTACCTTCATTGTTTCCACCATAGTGTGGGC
GTTTTGGCTTCTCTACTCCATATTGTCAACGTACGTGATTCATGGTTCTC
GAGGGGAACCCTCACGTCCATGGGATAAATTCCCGTTGTCTAGTTTCATG
GCATCTACGGCTGAGGCATCCATCACTCTGTTCGCCATCACCTTCCTTGC
GGGGCCGTTCACGATTTTGTACAAGAAGTTTGCTCACAACGTACCCGCGT
GGTTGAAGAACTGGTTGAATCGAAGGAAGCAACTTGGACTTTCCGCATTT
GTATTTGCTAGTGCACACGGAATCGCGGGAGCCATATCGAAGAGTCACTT
TGACGACGGTTGGAAAGGGCAGTTGTACTTTGTGCCAGGCATCCTGTACG
TCCTATTTTTCTTGCCTTCCCATCTATTACGATGCGCATCATTACTAACA
ACGTCCCATCTCATTCGACCCTGTGTCCCTATTGTAGTTCATATGTCATG
TTCGCCATTCTTGCAGTGTACAGCTCCGATCAGAGCGCCACCTCTCTTTC
ATGGGCTGAGTTTAGTGCTGTCTTTTCTTGGCTTGGTACCGCGGCCTTGG
CCTTAGGAACTCTTCATCAAGGACTTTGGGGACTAATTATTCACAAGCAT
CGTCCAGATCCCAGTTTCTGGGTAGGCGGTGGAGCAATTGTAAGTTCATG
TATATGGTGTTTGTCGAACAGAATGGAGAACTAACTGGTGGCATTTCTCC
TATTTGTGTCCCGTCCATTGGTACAGATGCCTATTTACTGGGTTGGAATT
ATACTACCACTTCTGGCCTTGGCTTTGCGATTGACTTCGTGGATGCCATG
CTTCTGGAACACTTCCAAACCGACAGGAGTGGAGTATTGTGGGGAAGTGG
CGGAAAACCGCAAACAAACTGTTTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:810808..812333-

>Ggra5524.t1 ID=Ggra5524.t1|Name=Ggra5524.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00000842_pilon:810808..812333- (Gracilaria gracilis GNS1m male)
ATGGACACTTCAGCCGACAACCTCGATACGTCCACACGTCCGAGAGAGCA
CGTAGTCGTGCTTGGCAACGGTCATTTCGGAGCCTCTCTTGCCCAACACA
TATCTCGCACAGCCGCCAATACACCATACTTTACCGTCTCGCACACCAGC
CGCAGATGCCTCGACCTTCCTGTCACAGCCGCCGTGTCTCAGGCGGACAT
TCTCATTCTGGCCATCCCGTCAGCTGCTTACGAATCACTCATCCTCGATA
TCACCCCGCATCTCCGTCACGATGCCATTGTTATCGACGTTGCGAACACC
CCGCTCTCCATTTTTCGCCGCCCCAAGCCACAGATTCCGTCTACCACCAT
ATTGAGCAAGCTGCTTCCGCCAACTGTATCTGTCGTGAAGGCGTTCAACA
CGCTATCCGCCAATCTTCTCACGGAGCTCAATGAAAGGTTAGTGCCACTA
CCGACCAATATCACTGCCCCGTTTGCTGCTGATCGAAATGAATCCGTTTT
GCATCGTATGCATTCTTTCGTCACGGCCATGGGTTTCTCGCCGTATTATA
TGGGACCATTGTCATCGTCGGCCAAACAGATGGAATCTCTACCACATGTA
TTCTTCCCGGCATACAAGTGTACCTTCATTGTTTCCACCATAGTGTGGGC
GTTTTGGCTTCTCTACTCCATATTGTCAACGTACGTGATTCATGGTTCTC
GAGGGGAACCCTCACGTCCATGGGATAAATTCCCGTTGTCTAGTTTCATG
GCATCTACGGCTGAGGCATCCATCACTCTGTTCGCCATCACCTTCCTTGC
GGGGCCGTTCACGATTTTGTACAAGAAGTTTGCTCACAACGTACCCGCGT
GGTTGAAGAACTGGTTGAATCGAAGGAAGCAACTTGGACTTTCCGCATTT
GTATTTGCTAGTGCACACGGAATCGCGGGAGCCATATCGAAGAGTCACTT
TGACGACGGTTGGAAAGGGCAGTTGTACTTTGTGCCAGGCATCCTTTCAT
ATGTCATGTTCGCCATTCTTGCAGTGTACAGCTCCGATCAGAGCGCCACC
TCTCTTTCATGGGCTGAGTTTAGTGCTGTCTTTTCTTGGCTTGGTACCGC
GGCCTTGGCCTTAGGAACTCTTCATCAAGGACTTTGGGGACTAATTATTC
ACAAGCATCGTCCAGATCCCAGTTTCTGGGTAGGCGGTGGAGCAATTATG
CCTATTTACTGGGTTGGAATTATACTACCACTTCTGGCCTTGGCTTTGCG
ATTGACTTCGTGGATGCCATGCTTCTGGAACACTTCCAAACCGACAGGAG
TGGAGTATTGTGGGGAAGTGGCGGAAAACCGCAAACAAACTGTTTAG
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