Ggra10271.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10271.t1
Unique NameGgra10271.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:310011..310511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10271Ggra10271Gracilaria gracilis GNS1m malegenetig00000016_pilon 310011..310511 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10271.t1.start1Ggra10271.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 310011..310013 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10271.t1.CDS1Ggra10271.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 310011..310511 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10271.t1.exon1Ggra10271.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 310011..310511 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10271.t1.stop1Ggra10271.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 310509..310511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10271.t1Ggra10271.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 310011..310511 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10271.t1 ID=Ggra10271.t1|Name=Ggra10271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=167bp
MSMRTVLLSFADFCTRKNDGQLAFDNHDLVQILIWFREVHEGTVDTSCEQ
IRSIWARASSSLPCGVQNLNGDRSLDLFVEDGLEADQHFRHAEQVASMFM
RELGPAKEVDKATLDLLLEVDPVHGKDCGMCLSCHAKEVNRSVKVAQRSV
RMLMRTIAAYTKSLYR*
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spliced messenger RNA

>Ggra10271.t1 ID=Ggra10271.t1|Name=Ggra10271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000016_pilon:310011..310511+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAATGCGCACTGTACTGCTGAGTTTTGCGGACTTCTGCACCCGAAA
GAACGACGGGCAGCTGGCTTTTGACAACCATGACTTGGTCCAAATCCTCA
TTTGGTTCCGAGAAGTTCATGAGGGAACGGTTGATACATCCTGCGAACAG
ATTAGGTCGATATGGGCAAGAGCGTCCAGCTCTCTGCCATGCGGCGTACA
AAATCTGAACGGAGACCGCAGTCTTGACCTTTTCGTCGAGGATGGACTGG
AAGCGGATCAACATTTTCGACATGCGGAACAAGTTGCATCCATGTTCATG
CGCGAACTAGGGCCGGCCAAGGAGGTCGACAAGGCCACGTTGGACCTACT
GCTGGAGGTTGACCCTGTGCATGGCAAGGATTGTGGAATGTGTTTATCCT
GCCATGCCAAGGAAGTCAACCGGTCGGTGAAGGTGGCCCAGCGCAGTGTG
CGCATGCTGATGCGTACGATTGCAGCGTACACGAAAAGCCTGTATCGGTG
A
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protein sequence of Ggra10271.t1

>Ggra10271.t1 ID=Ggra10271.t1|Name=Ggra10271.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=167bp
MSMRTVLLSFADFCTRKNDGQLAFDNHDLVQILIWFREVHEGTVDTSCEQ
IRSIWARASSSLPCGVQNLNGDRSLDLFVEDGLEADQHFRHAEQVASMFM
RELGPAKEVDKATLDLLLEVDPVHGKDCGMCLSCHAKEVNRSVKVAQRSV
RMLMRTIAAYTKSLYR*
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mRNA from alignment at tig00000016_pilon:310011..310511+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10271.t1 ID=Ggra10271.t1|Name=Ggra10271.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=501bp|location=Sequence derived from alignment at tig00000016_pilon:310011..310511+ (Gracilaria gracilis GNS1m male)
ATGTCAATGCGCACTGTACTGCTGAGTTTTGCGGACTTCTGCACCCGAAA
GAACGACGGGCAGCTGGCTTTTGACAACCATGACTTGGTCCAAATCCTCA
TTTGGTTCCGAGAAGTTCATGAGGGAACGGTTGATACATCCTGCGAACAG
ATTAGGTCGATATGGGCAAGAGCGTCCAGCTCTCTGCCATGCGGCGTACA
AAATCTGAACGGAGACCGCAGTCTTGACCTTTTCGTCGAGGATGGACTGG
AAGCGGATCAACATTTTCGACATGCGGAACAAGTTGCATCCATGTTCATG
CGCGAACTAGGGCCGGCCAAGGAGGTCGACAAGGCCACGTTGGACCTACT
GCTGGAGGTTGACCCTGTGCATGGCAAGGATTGTGGAATGTGTTTATCCT
GCCATGCCAAGGAAGTCAACCGGTCGGTGAAGGTGGCCCAGCGCAGTGTG
CGCATGCTGATGCGTACGATTGCAGCGTACACGAAAAGCCTGTATCGGTG
A
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Coding sequence (CDS) from alignment at tig00000016_pilon:310011..310511+

>Ggra10271.t1 ID=Ggra10271.t1|Name=Ggra10271.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=501bp|location=Sequence derived from alignment at tig00000016_pilon:310011..310511+ (Gracilaria gracilis GNS1m male)
ATGTCAATGCGCACTGTACTGCTGAGTTTTGCGGACTTCTGCACCCGAAA
GAACGACGGGCAGCTGGCTTTTGACAACCATGACTTGGTCCAAATCCTCA
TTTGGTTCCGAGAAGTTCATGAGGGAACGGTTGATACATCCTGCGAACAG
ATTAGGTCGATATGGGCAAGAGCGTCCAGCTCTCTGCCATGCGGCGTACA
AAATCTGAACGGAGACCGCAGTCTTGACCTTTTCGTCGAGGATGGACTGG
AAGCGGATCAACATTTTCGACATGCGGAACAAGTTGCATCCATGTTCATG
CGCGAACTAGGGCCGGCCAAGGAGGTCGACAAGGCCACGTTGGACCTACT
GCTGGAGGTTGACCCTGTGCATGGCAAGGATTGTGGAATGTGTTTATCCT
GCCATGCCAAGGAAGTCAACCGGTCGGTGAAGGTGGCCCAGCGCAGTGTG
CGCATGCTGATGCGTACGATTGCAGCGTACACGAAAAGCCTGTATCGGTG
A
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