Ggra10200.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10200.t1
Unique NameGgra10200.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:76853..77518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO47205
Preferred namePRDX6
PFAMs1-cysPrx_C,AhpC-TSA
Max annot lvl33208|Metazoa
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
GOsGO:0000302,GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004601,GO:0004602,GO:0004620,GO:0004623,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009636,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016042,GO:0016043,GO:0016192,GO:0016209,GO:0016298,GO:0016491,GO:0016684,GO:0016787,GO:0016788,GO:0016999,GO:0017001,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019899,GO:0022607,GO:0030030,GO:0030031,GO:0030141,GO:0031323,GO:0031325,GO:0031410,GO:0031625,GO:0031974,GO:0031982,GO:0031983,GO:0032060,GO:0032940,GO:0033120,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042221,GO:0042582,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043484,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045935,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046903,GO:0046983,GO:0047499,GO:0048024,GO:0048026,GO:0048471,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051252,GO:0051254,GO:0051716,GO:0052689,GO:0055114,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0072593,GO:0080090,GO:0097237,GO:0097708,GO:0098754,GO:0098869,GO:0099503,GO:0120031,GO:0120036,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990748
Evalue1.5e-92
EggNOG OGsCOG0450@1|root,KOG0854@2759|Eukaryota,38CN4@33154|Opisthokonta,3BBQ4@33208|Metazoa
EC1.11.1.15,1.11.1.7
DescriptionThiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Can reduce H(2)O(2) and short chain organic, fatty acid, and phospholipid hydroperoxides. Also has phospholipase activity, and can therefore either reduce the oxidized sn-2 fatty acyl grup of phospholipids (peroxidase activity) or hydrolyze the sn-2 ester bond of phospholipids (phospholipase activity). These activities are dependent on binding to phospholipids at acidic pH and to oxidized phospholipds at cytosolic pH. Plays a role in cell protection against oxidative stress by detoxifying peroxides and in phospholipid homeostasis
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10200Ggra10200Gracilaria gracilis GNS1m malegenetig00000016_pilon 76853..77518 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10200.t1.stop1Ggra10200.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 76853..76855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10200.t1.CDS1Ggra10200.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 76853..77518 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10200.t1.exon1Ggra10200.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 76853..77518 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10200.t1.start1Ggra10200.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 77516..77518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10200.t1Ggra10200.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 76853..77518 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10200.t1 ID=Ggra10200.t1|Name=Ggra10200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MAPLIGETAPDFKADSTVGEIRFHEYIKDSWAILFSHPADFTPVCTTELA
RVSQLLPEFEKRGVKCLALSCDDAASHKAWLPDICAYAQSGGSDIGYPIV
ADDDRSVARLYGMLPASESGGMAMTVRSVFVMGPDAKVKLSLTYPASTGR
NFDEILRVIDSLQLAVSSKVATPVDWNKGDDCVVLPSVSDEQAATLFPKG
FNAKALPSGKPYLRMTPMPDA*
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spliced messenger RNA

>Ggra10200.t1 ID=Ggra10200.t1|Name=Ggra10200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000016_pilon:76853..77518- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCTCTGATCGGCGAGACGGCGCCCGACTTCAAGGCAGACAGCAC
CGTGGGCGAGATCCGCTTCCACGAGTACATCAAGGACTCTTGGGCGATTC
TTTTCTCGCACCCGGCCGATTTCACGCCCGTATGCACCACCGAGCTGGCG
CGCGTCTCACAGCTGCTACCCGAGTTCGAGAAGCGCGGCGTCAAGTGCCT
GGCGCTGTCATGCGACGACGCGGCGTCGCACAAGGCGTGGCTGCCGGACA
TCTGCGCGTACGCGCAGAGCGGCGGCTCCGACATCGGCTACCCGATCGTG
GCGGACGACGACCGCAGCGTGGCGCGGCTGTACGGCATGCTGCCGGCGAG
TGAGTCCGGCGGCATGGCAATGACGGTGCGGTCGGTGTTCGTGATGGGAC
CGGACGCCAAGGTGAAGCTGTCGCTGACATACCCCGCCAGCACCGGGCGC
AACTTTGACGAGATTCTGCGCGTGATCGACTCGCTGCAGCTGGCCGTCAG
CAGCAAGGTGGCCACACCGGTGGACTGGAACAAGGGCGACGACTGCGTGG
TGCTACCCAGCGTGAGCGACGAGCAGGCGGCCACGCTGTTCCCGAAGGGC
TTCAACGCCAAGGCGCTACCCAGCGGCAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTAA
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protein sequence of Ggra10200.t1

>Ggra10200.t1 ID=Ggra10200.t1|Name=Ggra10200.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MAPLIGETAPDFKADSTVGEIRFHEYIKDSWAILFSHPADFTPVCTTELA
RVSQLLPEFEKRGVKCLALSCDDAASHKAWLPDICAYAQSGGSDIGYPIV
ADDDRSVARLYGMLPASESGGMAMTVRSVFVMGPDAKVKLSLTYPASTGR
NFDEILRVIDSLQLAVSSKVATPVDWNKGDDCVVLPSVSDEQAATLFPKG
FNAKALPSGKPYLRMTPMPDA*
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mRNA from alignment at tig00000016_pilon:76853..77518-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10200.t1 ID=Ggra10200.t1|Name=Ggra10200.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000016_pilon:76853..77518- (Gracilaria gracilis GNS1m male)
ATGGCACCTCTGATCGGCGAGACGGCGCCCGACTTCAAGGCAGACAGCAC
CGTGGGCGAGATCCGCTTCCACGAGTACATCAAGGACTCTTGGGCGATTC
TTTTCTCGCACCCGGCCGATTTCACGCCCGTATGCACCACCGAGCTGGCG
CGCGTCTCACAGCTGCTACCCGAGTTCGAGAAGCGCGGCGTCAAGTGCCT
GGCGCTGTCATGCGACGACGCGGCGTCGCACAAGGCGTGGCTGCCGGACA
TCTGCGCGTACGCGCAGAGCGGCGGCTCCGACATCGGCTACCCGATCGTG
GCGGACGACGACCGCAGCGTGGCGCGGCTGTACGGCATGCTGCCGGCGAG
TGAGTCCGGCGGCATGGCAATGACGGTGCGGTCGGTGTTCGTGATGGGAC
CGGACGCCAAGGTGAAGCTGTCGCTGACATACCCCGCCAGCACCGGGCGC
AACTTTGACGAGATTCTGCGCGTGATCGACTCGCTGCAGCTGGCCGTCAG
CAGCAAGGTGGCCACACCGGTGGACTGGAACAAGGGCGACGACTGCGTGG
TGCTACCCAGCGTGAGCGACGAGCAGGCGGCCACGCTGTTCCCGAAGGGC
TTCAACGCCAAGGCGCTACCCAGCGGCAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:76853..77518-

>Ggra10200.t1 ID=Ggra10200.t1|Name=Ggra10200.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000016_pilon:76853..77518- (Gracilaria gracilis GNS1m male)
ATGGCACCTCTGATCGGCGAGACGGCGCCCGACTTCAAGGCAGACAGCAC
CGTGGGCGAGATCCGCTTCCACGAGTACATCAAGGACTCTTGGGCGATTC
TTTTCTCGCACCCGGCCGATTTCACGCCCGTATGCACCACCGAGCTGGCG
CGCGTCTCACAGCTGCTACCCGAGTTCGAGAAGCGCGGCGTCAAGTGCCT
GGCGCTGTCATGCGACGACGCGGCGTCGCACAAGGCGTGGCTGCCGGACA
TCTGCGCGTACGCGCAGAGCGGCGGCTCCGACATCGGCTACCCGATCGTG
GCGGACGACGACCGCAGCGTGGCGCGGCTGTACGGCATGCTGCCGGCGAG
TGAGTCCGGCGGCATGGCAATGACGGTGCGGTCGGTGTTCGTGATGGGAC
CGGACGCCAAGGTGAAGCTGTCGCTGACATACCCCGCCAGCACCGGGCGC
AACTTTGACGAGATTCTGCGCGTGATCGACTCGCTGCAGCTGGCCGTCAG
CAGCAAGGTGGCCACACCGGTGGACTGGAACAAGGGCGACGACTGCGTGG
TGCTACCCAGCGTGAGCGACGAGCAGGCGGCCACGCTGTTCCCGAAGGGC
TTCAACGCCAAGGCGCTACCCAGCGGCAAGCCGTACCTGCGCATGACGCC
CATGCCGGACGCGTAA
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