Ggra5452.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5452.t1
Unique NameGgra5452.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:340420..340811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog588596.U9SSQ4
PFAMsTB2_DP1_HVA22
Max annot lvl4751|Fungi
KEGG koko:K17338
GOsGO:0006996,GO:0007029,GO:0008150,GO:0009987,GO:0010256,GO:0016043,GO:0061024,GO:0071786,GO:0071840,GO:0090158,GO:1990809
Evalue1.64e-13
EggNOG OGsCOG5052@1|root,KOG1726@2759|Eukaryota,3AA49@33154|Opisthokonta,3P1AY@4751|Fungi
DescriptionHVA22 domain membrane protein
COG categoryV
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5452Ggra5452Gracilaria gracilis GNS1m malegenetig00000842_pilon 340420..340811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5452.t1Ggra5452.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 340420..340811 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5452.t1.start1Ggra5452.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 340420..340422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5452.t1.CDS1Ggra5452.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 340420..340448 +
Ggra5452.t1.CDS2Ggra5452.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 340529..340811 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5452.t1.exon1Ggra5452.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 340420..340448 +
Ggra5452.t1.exon2Ggra5452.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 340529..340811 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5452.t1.intron1Ggra5452.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 340449..340528 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5452.t1.stop1Ggra5452.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 340809..340811 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5452.t1 ID=Ggra5452.t1|Name=Ggra5452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MGNVVTNLACHAIANLYASYGSYRALKNNSSNVQLIHILITWVFTTSFLI
VTENVLDPVFGQWLPFYFLMKLLMVGWMVYPGTRGACYLFARYIEPMLPE
IAQ*
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spliced messenger RNA

>Ggra5452.t1 ID=Ggra5452.t1|Name=Ggra5452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000842_pilon:340420..340811+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAACGTTGTTACAAACCTCGCGTGCCATGCAATAGCGAACCTTTA
CGCATCGTACGGTAGCTATCGCGCGTTGAAGAACAATTCGTCGAACGTAC
AGTTGATTCACATTCTCATCACATGGGTTTTCACCACATCCTTTCTAATC
GTCACTGAAAACGTACTTGACCCGGTTTTCGGACAGTGGCTACCGTTCTA
TTTCTTGATGAAGTTGCTCATGGTTGGATGGATGGTTTATCCAGGAACGC
GTGGCGCATGTTATCTTTTCGCGAGATATATCGAACCCATGCTCCCTGAA
ATCGCACAATAG
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protein sequence of Ggra5452.t1

>Ggra5452.t1 ID=Ggra5452.t1|Name=Ggra5452.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MGNVVTNLACHAIANLYASYGSYRALKNNSSNVQLIHILITWVFTTSFLI
VTENVLDPVFGQWLPFYFLMKLLMVGWMVYPGTRGACYLFARYIEPMLPE
IAQ*
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mRNA from alignment at tig00000842_pilon:340420..340811+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5452.t1 ID=Ggra5452.t1|Name=Ggra5452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=392bp|location=Sequence derived from alignment at tig00000842_pilon:340420..340811+ (Gracilaria gracilis GNS1m male)
ATGGGGAACGTTGTTACAAACCTCGCGTGGTAAGTCTCTAAAATACCATC
GGTTGCTTTTCCACCCATGTGCTGAACAACAAACTAACTGGCTCTATTTC
ACCACGCAGCCATGCAATAGCGAACCTTTACGCATCGTACGGTAGCTATC
GCGCGTTGAAGAACAATTCGTCGAACGTACAGTTGATTCACATTCTCATC
ACATGGGTTTTCACCACATCCTTTCTAATCGTCACTGAAAACGTACTTGA
CCCGGTTTTCGGACAGTGGCTACCGTTCTATTTCTTGATGAAGTTGCTCA
TGGTTGGATGGATGGTTTATCCAGGAACGCGTGGCGCATGTTATCTTTTC
GCGAGATATATCGAACCCATGCTCCCTGAAATCGCACAATAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:340420..340811+

>Ggra5452.t1 ID=Ggra5452.t1|Name=Ggra5452.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000842_pilon:340420..340811+ (Gracilaria gracilis GNS1m male)
ATGGGGAACGTTGTTACAAACCTCGCGTGCCATGCAATAGCGAACCTTTA
CGCATCGTACGGTAGCTATCGCGCGTTGAAGAACAATTCGTCGAACGTAC
AGTTGATTCACATTCTCATCACATGGGTTTTCACCACATCCTTTCTAATC
GTCACTGAAAACGTACTTGACCCGGTTTTCGGACAGTGGCTACCGTTCTA
TTTCTTGATGAAGTTGCTCATGGTTGGATGGATGGTTTATCCAGGAACGC
GTGGCGCATGTTATCTTTTCGCGAGATATATCGAACCCATGCTCCCTGAA
ATCGCACAATAG
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