Ggra5432.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5432.t1
Unique NameGgra5432.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:108179..108985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000016839
PFAMsChromate_transp
Max annot lvl121069|Pythiales
Evalue5.29e-15
EggNOG OGsCOG2059@1|root,2QRJG@2759|Eukaryota,1MCJA@121069|Pythiales
DescriptionChromate Ion Transporter (CHR) Family. Source PGD
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5432Ggra5432Gracilaria gracilis GNS1m malegenetig00000842_pilon 108179..108985 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5432.t1.stop1Ggra5432.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 108179..108181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5432.t1.CDS1Ggra5432.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 108179..108985 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5432.t1.exon1Ggra5432.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 108179..108985 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5432.t1.start1Ggra5432.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 108983..108985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5432.t1Ggra5432.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 108179..108985 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5432.t1 ID=Ggra5432.t1|Name=Ggra5432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=269bp
MSLAGVWSYLHLHDHRLLALILRLTELDIGFIPVAFAFVLIAAFRIVHGT
CASHPVRMAIAIVSMFVSVVFPPAFSSWVFIPLLLAGVFSYYVYTTLTAT
SSRLQKQPSPIPQWHANVCTTGIALLCNCALVTVIIAALPPSDLGFILLK
IFWPIGLCVFGGGAIVVPMLMKYVCSITYTPRSTPFLPSLPTTPTDEPFH
AVKSLNSDLLPTYVILAGFALFGCIPGPMFNMAPFLGAAIIPIKGTFFGS
QGLFGSGLLIQIGLLPFW*
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spliced messenger RNA

>Ggra5432.t1 ID=Ggra5432.t1|Name=Ggra5432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000842_pilon:108179..108985- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTGGCGGGCGTGTGGTCTTACTTGCACCTGCATGACCACCGTTT
GCTTGCGCTTATTCTGCGCCTCACCGAGCTAGATATCGGCTTCATTCCTG
TGGCGTTTGCCTTTGTGTTGATCGCTGCCTTTCGCATTGTTCATGGCACT
TGTGCTTCGCACCCCGTCAGAATGGCTATTGCTATCGTCTCCATGTTTGT
CTCCGTCGTTTTTCCACCCGCTTTTTCGTCCTGGGTCTTTATTCCGCTCC
TGCTGGCTGGTGTTTTTTCTTACTATGTGTACACCACGCTCACTGCTACC
TCCTCTCGCCTGCAGAAGCAACCCTCCCCCATTCCGCAATGGCATGCCAA
CGTTTGTACCACCGGAATTGCTCTGCTCTGCAACTGCGCTCTCGTCACCG
TTATCATCGCCGCATTGCCGCCCTCTGATCTGGGCTTCATCTTGCTCAAG
ATCTTCTGGCCCATCGGCCTGTGCGTGTTTGGAGGCGGTGCCATTGTCGT
CCCCATGCTTATGAAATACGTATGCTCAATAACATACACCCCGCGTAGCA
CACCCTTTTTACCCTCTCTCCCAACCACCCCCACCGACGAACCGTTTCAC
GCAGTGAAATCACTGAATTCTGATCTCTTACCAACCTACGTCATTCTGGC
CGGTTTCGCACTGTTCGGCTGTATCCCTGGCCCCATGTTCAACATGGCGC
CGTTCCTGGGCGCCGCCATCATCCCGATCAAGGGTACATTTTTCGGCTCG
CAAGGATTGTTCGGCTCCGGTCTTCTCATTCAGATTGGCTTGCTGCCGTT
TTGGTAG
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protein sequence of Ggra5432.t1

>Ggra5432.t1 ID=Ggra5432.t1|Name=Ggra5432.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MSLAGVWSYLHLHDHRLLALILRLTELDIGFIPVAFAFVLIAAFRIVHGT
CASHPVRMAIAIVSMFVSVVFPPAFSSWVFIPLLLAGVFSYYVYTTLTAT
SSRLQKQPSPIPQWHANVCTTGIALLCNCALVTVIIAALPPSDLGFILLK
IFWPIGLCVFGGGAIVVPMLMKYVCSITYTPRSTPFLPSLPTTPTDEPFH
AVKSLNSDLLPTYVILAGFALFGCIPGPMFNMAPFLGAAIIPIKGTFFGS
QGLFGSGLLIQIGLLPFW*
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mRNA from alignment at tig00000842_pilon:108179..108985-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5432.t1 ID=Ggra5432.t1|Name=Ggra5432.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000842_pilon:108179..108985- (Gracilaria gracilis GNS1m male)
ATGAGCTTGGCGGGCGTGTGGTCTTACTTGCACCTGCATGACCACCGTTT
GCTTGCGCTTATTCTGCGCCTCACCGAGCTAGATATCGGCTTCATTCCTG
TGGCGTTTGCCTTTGTGTTGATCGCTGCCTTTCGCATTGTTCATGGCACT
TGTGCTTCGCACCCCGTCAGAATGGCTATTGCTATCGTCTCCATGTTTGT
CTCCGTCGTTTTTCCACCCGCTTTTTCGTCCTGGGTCTTTATTCCGCTCC
TGCTGGCTGGTGTTTTTTCTTACTATGTGTACACCACGCTCACTGCTACC
TCCTCTCGCCTGCAGAAGCAACCCTCCCCCATTCCGCAATGGCATGCCAA
CGTTTGTACCACCGGAATTGCTCTGCTCTGCAACTGCGCTCTCGTCACCG
TTATCATCGCCGCATTGCCGCCCTCTGATCTGGGCTTCATCTTGCTCAAG
ATCTTCTGGCCCATCGGCCTGTGCGTGTTTGGAGGCGGTGCCATTGTCGT
CCCCATGCTTATGAAATACGTATGCTCAATAACATACACCCCGCGTAGCA
CACCCTTTTTACCCTCTCTCCCAACCACCCCCACCGACGAACCGTTTCAC
GCAGTGAAATCACTGAATTCTGATCTCTTACCAACCTACGTCATTCTGGC
CGGTTTCGCACTGTTCGGCTGTATCCCTGGCCCCATGTTCAACATGGCGC
CGTTCCTGGGCGCCGCCATCATCCCGATCAAGGGTACATTTTTCGGCTCG
CAAGGATTGTTCGGCTCCGGTCTTCTCATTCAGATTGGCTTGCTGCCGTT
TTGGTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:108179..108985-

>Ggra5432.t1 ID=Ggra5432.t1|Name=Ggra5432.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000842_pilon:108179..108985- (Gracilaria gracilis GNS1m male)
ATGAGCTTGGCGGGCGTGTGGTCTTACTTGCACCTGCATGACCACCGTTT
GCTTGCGCTTATTCTGCGCCTCACCGAGCTAGATATCGGCTTCATTCCTG
TGGCGTTTGCCTTTGTGTTGATCGCTGCCTTTCGCATTGTTCATGGCACT
TGTGCTTCGCACCCCGTCAGAATGGCTATTGCTATCGTCTCCATGTTTGT
CTCCGTCGTTTTTCCACCCGCTTTTTCGTCCTGGGTCTTTATTCCGCTCC
TGCTGGCTGGTGTTTTTTCTTACTATGTGTACACCACGCTCACTGCTACC
TCCTCTCGCCTGCAGAAGCAACCCTCCCCCATTCCGCAATGGCATGCCAA
CGTTTGTACCACCGGAATTGCTCTGCTCTGCAACTGCGCTCTCGTCACCG
TTATCATCGCCGCATTGCCGCCCTCTGATCTGGGCTTCATCTTGCTCAAG
ATCTTCTGGCCCATCGGCCTGTGCGTGTTTGGAGGCGGTGCCATTGTCGT
CCCCATGCTTATGAAATACGTATGCTCAATAACATACACCCCGCGTAGCA
CACCCTTTTTACCCTCTCTCCCAACCACCCCCACCGACGAACCGTTTCAC
GCAGTGAAATCACTGAATTCTGATCTCTTACCAACCTACGTCATTCTGGC
CGGTTTCGCACTGTTCGGCTGTATCCCTGGCCCCATGTTCAACATGGCGC
CGTTCCTGGGCGCCGCCATCATCCCGATCAAGGGTACATTTTTCGGCTCG
CAAGGATTGTTCGGCTCCGGTCTTCTCATTCAGATTGGCTTGCTGCCGTT
TTGGTAG
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