Ggra5682.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5682.t1
Unique NameGgra5682.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length458
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1345456..1347708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2711.XP_006475458.1
PFAMsCwfJ_C_1,CwfJ_C_2,zf-CCCH
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue8.31e-27
EggNOG OGsKOG2476@1|root,KOG2476@2759|Eukaryota,37IYE@33090|Viridiplantae,3GCXX@35493|Streptophyta
DescriptionZinc finger CCCH domain-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5682Ggra5682Gracilaria gracilis GNS1m malegenetig00000842_pilon 1345456..1347708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5682.t1Ggra5682.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1345456..1347708 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5682.t1.start1Ggra5682.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1345456..1345458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5682.t1.CDS1Ggra5682.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1345456..1345540 +
Ggra5682.t1.CDS2Ggra5682.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1345638..1345652 +
Ggra5682.t1.CDS3Ggra5682.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1345747..1345779 +
Ggra5682.t1.CDS4Ggra5682.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1346468..1347708 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5682.t1.exon1Ggra5682.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1345456..1345540 +
Ggra5682.t1.exon2Ggra5682.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 1345638..1345652 +
Ggra5682.t1.exon3Ggra5682.t1.exon3Gracilaria gracilis GNS1m maleexontig00000842_pilon 1345747..1345779 +
Ggra5682.t1.exon4Ggra5682.t1.exon4Gracilaria gracilis GNS1m maleexontig00000842_pilon 1346468..1347708 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5682.t1.intron1Ggra5682.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1345541..1345637 +
Ggra5682.t1.intron2Ggra5682.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1345653..1345746 +
Ggra5682.t1.intron3Ggra5682.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000842_pilon 1345780..1346467 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5682.t1.stop1Ggra5682.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1347706..1347708 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5682.t1 ID=Ggra5682.t1|Name=Ggra5682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=458bp
MRFGNAGSQVLLPAYQLNIVFVLFAFVRDRDVLVDIKMGLDRWSVVPKLQ
KLNKQNGSFHAILLLSQPSSAQAMPLPTYFAAESFDGSEEKRTVAENMHY
VGPSALKILSGLAVLFVGEETESMFSANVDVLISSAPSGMGNDERSARLG
LRVKPKYHFFAGENFEKYEPFLLRGCSYATRLIQVAEMGRGKWLFAADIT
PIAEIGEQEVASGKVLYEVGKSRPLKRRRQECWFCLSNKVEEHLVTYVGK
EVYVALAKGGLNESHFVIVPVSHVTSCIDISDDTMEEIERIMDGIGRYYK
QKRGGEGFFFERVMSSEQQLQGNNQKKRIMHMCIQAICIKESKSGAMVEE
IERASERLGFENLKVSAGGGKHESCMREVRAKGWRNSFWAQLSSGKQIAV
ECTEKRSVPPVFGRVVAARVLGTPQRVAWRECVLTKEQEQALAEQVAIEL
DEYIKDG*
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spliced messenger RNA

>Ggra5682.t1 ID=Ggra5682.t1|Name=Ggra5682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1374bp|location=Sequence derived from alignment at tig00000842_pilon:1345456..1347708+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATTTGGCAACGCTGGATCTCAAGTTCTGCTCCCCGCTTATCAACT
AAACATCGTTTTCGTTTTGTTTGCCTTCGTTCGGGACAGAGATGTACTGG
TTGACATCAAAATGGGTCTTGATCGCTGGAGCGTAGTGCCGAAGCTACAG
AAACTGAACAAGCAGAATGGTTCATTTCACGCAATATTGCTTCTTTCTCA
GCCGTCATCCGCGCAAGCAATGCCTTTGCCAACGTATTTTGCGGCAGAAA
GCTTCGACGGATCCGAAGAGAAGCGAACTGTGGCAGAAAATATGCACTAC
GTAGGACCGAGCGCGTTGAAGATACTTAGCGGTTTGGCTGTACTGTTTGT
GGGCGAGGAAACCGAAAGCATGTTTAGCGCTAACGTAGACGTACTGATCA
GTAGTGCCCCGTCAGGAATGGGAAATGATGAAAGATCAGCGAGACTGGGA
TTGCGCGTCAAGCCAAAGTATCACTTCTTCGCCGGTGAGAACTTTGAGAA
GTACGAACCTTTTCTTCTGAGGGGGTGTTCATATGCCACTAGATTGATAC
AAGTGGCTGAAATGGGGCGCGGCAAATGGCTGTTTGCGGCCGATATCACA
CCAATAGCAGAAATAGGAGAACAAGAGGTTGCGAGTGGCAAAGTGCTGTA
CGAAGTAGGGAAATCAAGACCGCTGAAGAGAAGAAGACAGGAGTGCTGGT
TTTGTCTTTCGAACAAAGTCGAGGAACATCTTGTGACATACGTCGGAAAA
GAGGTATATGTTGCTCTCGCAAAAGGAGGGCTGAATGAGAGCCACTTTGT
AATTGTTCCGGTTAGTCATGTGACTAGCTGTATCGACATCAGTGATGACA
CGATGGAAGAAATAGAACGCATCATGGACGGGATTGGACGTTATTACAAA
CAGAAACGAGGGGGAGAAGGATTCTTTTTTGAGAGAGTTATGAGCAGCGA
ACAGCAATTACAGGGCAACAACCAAAAGAAGAGAATCATGCATATGTGCA
TACAGGCAATATGTATCAAGGAATCGAAGAGTGGAGCAATGGTGGAAGAA
ATTGAGCGCGCAAGTGAACGATTAGGGTTCGAGAATTTGAAAGTGAGTGC
TGGCGGTGGCAAACATGAGAGTTGTATGCGCGAAGTGAGAGCAAAGGGGT
GGCGTAACTCTTTTTGGGCTCAGCTTTCATCCGGAAAACAAATAGCGGTG
GAGTGTACTGAGAAGAGATCCGTTCCGCCAGTTTTCGGGCGAGTGGTTGC
TGCACGTGTGCTGGGAACACCGCAGCGAGTGGCATGGAGAGAATGTGTAT
TGACGAAGGAACAAGAACAAGCGCTTGCAGAACAGGTAGCGATAGAGTTG
GACGAATACATCAAGGACGGTTAA
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protein sequence of Ggra5682.t1

>Ggra5682.t1 ID=Ggra5682.t1|Name=Ggra5682.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=458bp
MRFGNAGSQVLLPAYQLNIVFVLFAFVRDRDVLVDIKMGLDRWSVVPKLQ
KLNKQNGSFHAILLLSQPSSAQAMPLPTYFAAESFDGSEEKRTVAENMHY
VGPSALKILSGLAVLFVGEETESMFSANVDVLISSAPSGMGNDERSARLG
LRVKPKYHFFAGENFEKYEPFLLRGCSYATRLIQVAEMGRGKWLFAADIT
PIAEIGEQEVASGKVLYEVGKSRPLKRRRQECWFCLSNKVEEHLVTYVGK
EVYVALAKGGLNESHFVIVPVSHVTSCIDISDDTMEEIERIMDGIGRYYK
QKRGGEGFFFERVMSSEQQLQGNNQKKRIMHMCIQAICIKESKSGAMVEE
IERASERLGFENLKVSAGGGKHESCMREVRAKGWRNSFWAQLSSGKQIAV
ECTEKRSVPPVFGRVVAARVLGTPQRVAWRECVLTKEQEQALAEQVAIEL
DEYIKDG*
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mRNA from alignment at tig00000842_pilon:1345456..1347708+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5682.t1 ID=Ggra5682.t1|Name=Ggra5682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2253bp|location=Sequence derived from alignment at tig00000842_pilon:1345456..1347708+ (Gracilaria gracilis GNS1m male)
ATGCGATTTGGCAACGCTGGATCTCAAGTTCTGCTCCCCGCTTATCAACT
AAACATCGTTTTCGTTTTGTTTGCCTTCGTTCGGGGTGAGTTATCCATAA
CGACGCACGTACACGGCTGCATTAGCAAATGAAGCCCAACGCCAAAACGG
AGTCACTCACATTCTCCGCTTCGATGTCATAGACAGAGATGTACTGGGTA
GGCCGAGATTGTAATTGACACACCTACGGCGAGAGAAATCATACATACCG
CTCCAGCGATCAAGACCCATTTTGTGTCGTTGCTGTTGAAGTTGACATCA
AAATGGGTCTTGATCGCTGGAGCGGTATGTACTGATTTCGAGGAGAGGAA
GGAAATGGAATCCGGTCATGTGCGAATGCATAGCTTTTTGTTCGGCAAAT
ACTAAAAGCTCGATGGCCGTAGAGATTTCTAGACGTTATTTTTAGATAAA
CTTTATCTGGAGCGAGCTTTCGGATTCCATACAGAGAATTCTGACAAGAA
GCGTCATTATCTTCTTCATCAACTGCTCATGCGTTTGATAACGAACCTCC
GACATCCAGCCACCAGCTATTCACAAGGTGCTGAATACCTACCGAAGGTA
TTCCACGAAACTCGTGTTCGGCGGCCCCGACTGCAAAAGAGGTTTTTTGG
AAAGTGACCTACGGAATTTGCAAGTCCGGTAGCCCTACAAGGGTAGTACA
GACGTCTGTAGCCTTCGTTACTACGTTCGTTCGTTAACACCAAGCTCAAT
GATGCCTATCTTTCACTGATGAGCAGGCGCAAAGATTGGAAAAGATCGTG
CAACGCAGAAATATCCGTGAAGTCTACGAATTAAAGCATCCAGAAACGAG
TTCGAGCTCTCTTCCTGTGACGGTCGGTAAGTTCCTACCGGACAGCTATA
TCTGTGACAAGTCAGGACTTTGAAGCGAAGTAAGTTTGAATCGTGGTTAT
CCAGGAACTGTTGCAAATGGTACGCGTGGTTGTGGTGAATCCTGGTTCTG
ATTTCGAAGCAGTAGTGCCGAAGCTACAGAAACTGAACAAGCAGAATGGT
TCATTTCACGCAATATTGCTTCTTTCTCAGCCGTCATCCGCGCAAGCAAT
GCCTTTGCCAACGTATTTTGCGGCAGAAAGCTTCGACGGATCCGAAGAGA
AGCGAACTGTGGCAGAAAATATGCACTACGTAGGACCGAGCGCGTTGAAG
ATACTTAGCGGTTTGGCTGTACTGTTTGTGGGCGAGGAAACCGAAAGCAT
GTTTAGCGCTAACGTAGACGTACTGATCAGTAGTGCCCCGTCAGGAATGG
GAAATGATGAAAGATCAGCGAGACTGGGATTGCGCGTCAAGCCAAAGTAT
CACTTCTTCGCCGGTGAGAACTTTGAGAAGTACGAACCTTTTCTTCTGAG
GGGGTGTTCATATGCCACTAGATTGATACAAGTGGCTGAAATGGGGCGCG
GCAAATGGCTGTTTGCGGCCGATATCACACCAATAGCAGAAATAGGAGAA
CAAGAGGTTGCGAGTGGCAAAGTGCTGTACGAAGTAGGGAAATCAAGACC
GCTGAAGAGAAGAAGACAGGAGTGCTGGTTTTGTCTTTCGAACAAAGTCG
AGGAACATCTTGTGACATACGTCGGAAAAGAGGTATATGTTGCTCTCGCA
AAAGGAGGGCTGAATGAGAGCCACTTTGTAATTGTTCCGGTTAGTCATGT
GACTAGCTGTATCGACATCAGTGATGACACGATGGAAGAAATAGAACGCA
TCATGGACGGGATTGGACGTTATTACAAACAGAAACGAGGGGGAGAAGGA
TTCTTTTTTGAGAGAGTTATGAGCAGCGAACAGCAATTACAGGGCAACAA
CCAAAAGAAGAGAATCATGCATATGTGCATACAGGCAATATGTATCAAGG
AATCGAAGAGTGGAGCAATGGTGGAAGAAATTGAGCGCGCAAGTGAACGA
TTAGGGTTCGAGAATTTGAAAGTGAGTGCTGGCGGTGGCAAACATGAGAG
TTGTATGCGCGAAGTGAGAGCAAAGGGGTGGCGTAACTCTTTTTGGGCTC
AGCTTTCATCCGGAAAACAAATAGCGGTGGAGTGTACTGAGAAGAGATCC
GTTCCGCCAGTTTTCGGGCGAGTGGTTGCTGCACGTGTGCTGGGAACACC
GCAGCGAGTGGCATGGAGAGAATGTGTATTGACGAAGGAACAAGAACAAG
CGCTTGCAGAACAGGTAGCGATAGAGTTGGACGAATACATCAAGGACGGT
TAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1345456..1347708+

>Ggra5682.t1 ID=Ggra5682.t1|Name=Ggra5682.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1374bp|location=Sequence derived from alignment at tig00000842_pilon:1345456..1347708+ (Gracilaria gracilis GNS1m male)
ATGCGATTTGGCAACGCTGGATCTCAAGTTCTGCTCCCCGCTTATCAACT
AAACATCGTTTTCGTTTTGTTTGCCTTCGTTCGGGACAGAGATGTACTGG
TTGACATCAAAATGGGTCTTGATCGCTGGAGCGTAGTGCCGAAGCTACAG
AAACTGAACAAGCAGAATGGTTCATTTCACGCAATATTGCTTCTTTCTCA
GCCGTCATCCGCGCAAGCAATGCCTTTGCCAACGTATTTTGCGGCAGAAA
GCTTCGACGGATCCGAAGAGAAGCGAACTGTGGCAGAAAATATGCACTAC
GTAGGACCGAGCGCGTTGAAGATACTTAGCGGTTTGGCTGTACTGTTTGT
GGGCGAGGAAACCGAAAGCATGTTTAGCGCTAACGTAGACGTACTGATCA
GTAGTGCCCCGTCAGGAATGGGAAATGATGAAAGATCAGCGAGACTGGGA
TTGCGCGTCAAGCCAAAGTATCACTTCTTCGCCGGTGAGAACTTTGAGAA
GTACGAACCTTTTCTTCTGAGGGGGTGTTCATATGCCACTAGATTGATAC
AAGTGGCTGAAATGGGGCGCGGCAAATGGCTGTTTGCGGCCGATATCACA
CCAATAGCAGAAATAGGAGAACAAGAGGTTGCGAGTGGCAAAGTGCTGTA
CGAAGTAGGGAAATCAAGACCGCTGAAGAGAAGAAGACAGGAGTGCTGGT
TTTGTCTTTCGAACAAAGTCGAGGAACATCTTGTGACATACGTCGGAAAA
GAGGTATATGTTGCTCTCGCAAAAGGAGGGCTGAATGAGAGCCACTTTGT
AATTGTTCCGGTTAGTCATGTGACTAGCTGTATCGACATCAGTGATGACA
CGATGGAAGAAATAGAACGCATCATGGACGGGATTGGACGTTATTACAAA
CAGAAACGAGGGGGAGAAGGATTCTTTTTTGAGAGAGTTATGAGCAGCGA
ACAGCAATTACAGGGCAACAACCAAAAGAAGAGAATCATGCATATGTGCA
TACAGGCAATATGTATCAAGGAATCGAAGAGTGGAGCAATGGTGGAAGAA
ATTGAGCGCGCAAGTGAACGATTAGGGTTCGAGAATTTGAAAGTGAGTGC
TGGCGGTGGCAAACATGAGAGTTGTATGCGCGAAGTGAGAGCAAAGGGGT
GGCGTAACTCTTTTTGGGCTCAGCTTTCATCCGGAAAACAAATAGCGGTG
GAGTGTACTGAGAAGAGATCCGTTCCGCCAGTTTTCGGGCGAGTGGTTGC
TGCACGTGTGCTGGGAACACCGCAGCGAGTGGCATGGAGAGAATGTGTAT
TGACGAAGGAACAAGAACAAGCGCTTGCAGAACAGGTAGCGATAGAGTTG
GACGAATACATCAAGGACGGTTAA
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