Ggra5466.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5466.t1
Unique NameGgra5466.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:379049..379542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SQC9
PFAMsClpS
Max annot lvl33090|Viridiplantae
KEGG koko:K06891
Evalue5.25e-18
EggNOG OGsCOG2127@1|root,2RY43@2759|Eukaryota,37U4M@33090|Viridiplantae
DescriptionATP-dependent Clp protease adapter protein
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5466Ggra5466Gracilaria gracilis GNS1m malegenetig00000842_pilon 379049..379542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5466.t1Ggra5466.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 379049..379542 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5466.t1.stop1Ggra5466.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 379049..379051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5466.t1.CDS1Ggra5466.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 379049..379083 -
Ggra5466.t1.CDS2Ggra5466.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 379167..379542 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5466.t1.exon1Ggra5466.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 379049..379083 -
Ggra5466.t1.exon2Ggra5466.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 379167..379542 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5466.t1.intron1Ggra5466.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 379084..379166 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5466.t1.start1Ggra5466.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 379540..379542 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5466.t1 ID=Ggra5466.t1|Name=Ggra5466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=137bp
MSSPVQKLLNASSSRSVCASRIAQQAARNMTVLVAAPPVKEKVLEKKVNT
QLKKEFKQPEMYRLYIYNDPVNKRERVVDVLLKTCQGLTFSRAYAAMQEA
HENGRGLVLVIAQEIAEHYCASINSAGVFSTIEPDK*
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spliced messenger RNA

>Ggra5466.t1 ID=Ggra5466.t1|Name=Ggra5466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000842_pilon:379049..379542- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCACCGGTACAGAAGCTTCTCAATGCCAGTTCTTCTCGCAGCGT
ATGCGCGTCACGAATTGCGCAACAGGCTGCGAGAAATATGACTGTGCTGG
TCGCCGCACCACCAGTGAAAGAGAAGGTGCTCGAAAAGAAAGTGAACACC
CAGCTGAAGAAGGAATTCAAACAACCTGAAATGTATCGACTTTACATTTA
CAACGATCCGGTCAACAAGCGAGAACGTGTGGTAGATGTGTTGCTGAAGA
CGTGTCAGGGGCTTACGTTTTCCAGGGCATACGCTGCTATGCAAGAGGCC
CATGAGAACGGCAGAGGTCTGGTTTTAGTCATTGCACAGGAGATTGCCGA
GCACTACTGCGCCTCTATCAATTCAGCTGGCGTCTTCAGCACTATTGAGC
CGGACAAGTAG
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protein sequence of Ggra5466.t1

>Ggra5466.t1 ID=Ggra5466.t1|Name=Ggra5466.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=137bp
MSSPVQKLLNASSSRSVCASRIAQQAARNMTVLVAAPPVKEKVLEKKVNT
QLKKEFKQPEMYRLYIYNDPVNKRERVVDVLLKTCQGLTFSRAYAAMQEA
HENGRGLVLVIAQEIAEHYCASINSAGVFSTIEPDK*
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mRNA from alignment at tig00000842_pilon:379049..379542-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5466.t1 ID=Ggra5466.t1|Name=Ggra5466.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp|location=Sequence derived from alignment at tig00000842_pilon:379049..379542- (Gracilaria gracilis GNS1m male)
ATGTCATCACCGGTACAGAAGCTTCTCAATGCCAGTTCTTCTCGCAGCGT
ATGCGCGTCACGAATTGCGCAACAGGCTGCGAGAAATATGACTGTGCTGG
TCGCCGCACCACCAGTGAAAGAGAAGGTGCTCGAAAAGAAAGTGAACACC
CAGCTGAAGAAGGAATTCAAACAACCTGAAATGTATCGACTTTACATTTA
CAACGATCCGGTCAACAAGCGAGAACGTGTGGTAGATGTGTTGCTGAAGA
CGTGTCAGGGGCTTACGTTTTCCAGGGCATACGCTGCTATGCAAGAGGCC
CATGAGAACGGCAGAGGTCTGGTTTTAGTCATTGCACAGGAGATTGCCGA
GCACTACTGCGCCTCTATCAATTCAGGTATGTCTCACCACATATTGTATC
TTGTCACTCCTTCGAAACACGAGTTCTAACATTGTGTTCACATTTTGGTT
GGCCTGCAGCTGGCGTCTTCAGCACTATTGAGCCGGACAAGTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:379049..379542-

>Ggra5466.t1 ID=Ggra5466.t1|Name=Ggra5466.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000842_pilon:379049..379542- (Gracilaria gracilis GNS1m male)
ATGTCATCACCGGTACAGAAGCTTCTCAATGCCAGTTCTTCTCGCAGCGT
ATGCGCGTCACGAATTGCGCAACAGGCTGCGAGAAATATGACTGTGCTGG
TCGCCGCACCACCAGTGAAAGAGAAGGTGCTCGAAAAGAAAGTGAACACC
CAGCTGAAGAAGGAATTCAAACAACCTGAAATGTATCGACTTTACATTTA
CAACGATCCGGTCAACAAGCGAGAACGTGTGGTAGATGTGTTGCTGAAGA
CGTGTCAGGGGCTTACGTTTTCCAGGGCATACGCTGCTATGCAAGAGGCC
CATGAGAACGGCAGAGGTCTGGTTTTAGTCATTGCACAGGAGATTGCCGA
GCACTACTGCGCCTCTATCAATTCAGCTGGCGTCTTCAGCACTATTGAGC
CGGACAAGTAG
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