Ggra5706.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5706.t1
Unique NameGgra5706.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:1409321..1409962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391008.Smal_3866
Preferred namegst7
PFAMsGST_C,GST_C_2,GST_N
Max annot lvl135614|Xanthomonadales
KEGG koko:K11209
Evalue3.63e-63
EggNOG OGsCOG0625@1|root,COG0625@2|Bacteria,1MUN3@1224|Proteobacteria,1RMF7@1236|Gammaproteobacteria,1X3GH@135614|Xanthomonadales
DescriptionBelongs to the GST superfamily
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5706Ggra5706Gracilaria gracilis GNS1m malegenetig00000842_pilon 1409321..1409962 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5706.t1.start1Ggra5706.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 1409321..1409323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5706.t1.CDS1Ggra5706.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 1409321..1409962 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5706.t1.exon1Ggra5706.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 1409321..1409962 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5706.t1.stop1Ggra5706.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 1409960..1409962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5706.t1Ggra5706.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 1409321..1409962 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5706.t1 ID=Ggra5706.t1|Name=Ggra5706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MPDYTLYYFPTPNGKKISLALEELQLSYEIKVVDIRNDDQFKPEFIAINP
NSKIPALVDNTAEGGPFAVFESGAILEYLADKHGKLMPSMMQPRARMAVK
QWLYWQMAGFGPMLGQMNFFWVYSKEDIPVGKERYLKEGLRLFSVLDKQL
ESNKFIAGDEYSIADIACYWWSLSPQRIEAVKHQFNAFENIKRWQKQIED
RDAVAKVNAITLE*
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spliced messenger RNA

>Ggra5706.t1 ID=Ggra5706.t1|Name=Ggra5706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000842_pilon:1409321..1409962+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGATTACACTTTGTATTATTTTCCAACTCCCAATGGCAAGAAAAT
CAGTCTTGCTTTGGAAGAGCTGCAACTCTCATACGAGATCAAGGTGGTAG
ACATCCGCAACGATGATCAATTTAAACCTGAATTTATTGCAATCAATCCC
AACTCCAAGATTCCCGCGCTCGTCGATAACACAGCCGAAGGAGGTCCATT
CGCTGTCTTTGAGTCTGGTGCCATTCTCGAATACCTAGCCGACAAGCATG
GCAAGCTCATGCCATCGATGATGCAGCCGAGGGCAAGAATGGCTGTCAAG
CAGTGGCTGTACTGGCAAATGGCTGGTTTTGGTCCAATGCTGGGACAGAT
GAATTTCTTCTGGGTCTATTCCAAAGAAGATATTCCAGTTGGAAAAGAGC
GCTACCTCAAGGAAGGGCTCAGGTTGTTTTCCGTGTTGGACAAGCAGCTT
GAGTCAAACAAATTCATTGCAGGTGATGAGTATTCCATTGCTGATATCGC
CTGTTATTGGTGGAGTCTGTCTCCTCAGCGAATTGAAGCAGTCAAGCATC
AGTTTAACGCCTTTGAGAACATAAAGAGGTGGCAGAAGCAGATCGAGGAC
CGTGACGCAGTTGCCAAGGTTAACGCCATCACACTTGAATAA
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protein sequence of Ggra5706.t1

>Ggra5706.t1 ID=Ggra5706.t1|Name=Ggra5706.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MPDYTLYYFPTPNGKKISLALEELQLSYEIKVVDIRNDDQFKPEFIAINP
NSKIPALVDNTAEGGPFAVFESGAILEYLADKHGKLMPSMMQPRARMAVK
QWLYWQMAGFGPMLGQMNFFWVYSKEDIPVGKERYLKEGLRLFSVLDKQL
ESNKFIAGDEYSIADIACYWWSLSPQRIEAVKHQFNAFENIKRWQKQIED
RDAVAKVNAITLE*
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mRNA from alignment at tig00000842_pilon:1409321..1409962+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5706.t1 ID=Ggra5706.t1|Name=Ggra5706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000842_pilon:1409321..1409962+ (Gracilaria gracilis GNS1m male)
ATGCCCGATTACACTTTGTATTATTTTCCAACTCCCAATGGCAAGAAAAT
CAGTCTTGCTTTGGAAGAGCTGCAACTCTCATACGAGATCAAGGTGGTAG
ACATCCGCAACGATGATCAATTTAAACCTGAATTTATTGCAATCAATCCC
AACTCCAAGATTCCCGCGCTCGTCGATAACACAGCCGAAGGAGGTCCATT
CGCTGTCTTTGAGTCTGGTGCCATTCTCGAATACCTAGCCGACAAGCATG
GCAAGCTCATGCCATCGATGATGCAGCCGAGGGCAAGAATGGCTGTCAAG
CAGTGGCTGTACTGGCAAATGGCTGGTTTTGGTCCAATGCTGGGACAGAT
GAATTTCTTCTGGGTCTATTCCAAAGAAGATATTCCAGTTGGAAAAGAGC
GCTACCTCAAGGAAGGGCTCAGGTTGTTTTCCGTGTTGGACAAGCAGCTT
GAGTCAAACAAATTCATTGCAGGTGATGAGTATTCCATTGCTGATATCGC
CTGTTATTGGTGGAGTCTGTCTCCTCAGCGAATTGAAGCAGTCAAGCATC
AGTTTAACGCCTTTGAGAACATAAAGAGGTGGCAGAAGCAGATCGAGGAC
CGTGACGCAGTTGCCAAGGTTAACGCCATCACACTTGAATAA
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Coding sequence (CDS) from alignment at tig00000842_pilon:1409321..1409962+

>Ggra5706.t1 ID=Ggra5706.t1|Name=Ggra5706.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000842_pilon:1409321..1409962+ (Gracilaria gracilis GNS1m male)
ATGCCCGATTACACTTTGTATTATTTTCCAACTCCCAATGGCAAGAAAAT
CAGTCTTGCTTTGGAAGAGCTGCAACTCTCATACGAGATCAAGGTGGTAG
ACATCCGCAACGATGATCAATTTAAACCTGAATTTATTGCAATCAATCCC
AACTCCAAGATTCCCGCGCTCGTCGATAACACAGCCGAAGGAGGTCCATT
CGCTGTCTTTGAGTCTGGTGCCATTCTCGAATACCTAGCCGACAAGCATG
GCAAGCTCATGCCATCGATGATGCAGCCGAGGGCAAGAATGGCTGTCAAG
CAGTGGCTGTACTGGCAAATGGCTGGTTTTGGTCCAATGCTGGGACAGAT
GAATTTCTTCTGGGTCTATTCCAAAGAAGATATTCCAGTTGGAAAAGAGC
GCTACCTCAAGGAAGGGCTCAGGTTGTTTTCCGTGTTGGACAAGCAGCTT
GAGTCAAACAAATTCATTGCAGGTGATGAGTATTCCATTGCTGATATCGC
CTGTTATTGGTGGAGTCTGTCTCCTCAGCGAATTGAAGCAGTCAAGCATC
AGTTTAACGCCTTTGAGAACATAAAGAGGTGGCAGAAGCAGATCGAGGAC
CGTGACGCAGTTGCCAAGGTTAACGCCATCACACTTGAATAA
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