Ggra8694.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8694.t1
Unique NameGgra8694.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length711
Homology
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A2V3IPK5 (Methionine synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPK5_9FLOR)

HSP 1 Score: 306 bits (784), Expect = 1.580e-86
Identity = 166/242 (68.60%), Postives = 178/242 (73.55%), Query Frame = 0
Query:  434 LILSVDEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLMD 628
            L + VDEF+RHAKL KRYGAAVVVM FDE GQAA+RD++VRIC+RAYKILVEDVKFNPNDIIFDPNILTV T                                               AMHSAFL++GI+NGMDMGIVNAG+IPVY DIPE LLNLIED LLNR +EATENLLEFSLNMDKKSSLG G DADKNKWR L V +RLSHALVKGIDEFV GDVEEARQAADKPL VIEGPLMD
Sbjct:  471 LKVGVDEFIRHAKLVKRYGAAVVVMAFDEYGQAATRDEKVRICSRAYKILVEDVKFNPNDIIFDPNILTVATGIEEHNNYAKDFFEATRIIKDTLPHCHISGGVSNISFSFRGNNALREAMHSAFLFHGISNGMDMGIVNAGIIPVYSDIPENLLNLIEDVLLNRKAEATENLLEFSLNMDKKSSLGAGNDADKNKWRELPVNQRLSHALVKGIDEFVNGDVEEARQAADKPLSVIEGPLMD 712          
BLAST of Ggra8694.t1 vs. uniprot
Match: R7QHF9 (Methionine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF9_CHOCR)

HSP 1 Score: 283 bits (725), Expect = 1.720e-78
Identity = 153/237 (64.56%), Postives = 169/237 (71.31%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLMD 628
            +EF+RHA+L K+YGAAVVVM FDEEGQAA+RDD+VRIC RAY+ILV+ V FNPNDIIFDPNILTV T                                               AMHSAFLY+GI+ GMDMGIVNAG+IPVY D+P+KL++LIED LLNRS E TENLLEFSL MDKKSS  G TDA+KNKWR L V ERLSHALVKGID FVLGDVEEAR  ADKPLDVIEGPLMD
Sbjct:  477 EEFIRHARLVKQYGAAVVVMAFDEEGQAATRDDKVRICERAYRILVDVVNFNPNDIIFDPNILTVATGIEEHNNYAVDFFEATTLIREKLPHCHISGGVSNISFSFRGNNALREAMHSAFLYHGISKGMDMGIVNAGIIPVYSDVPQKLMDLIEDVLLNRSPEGTENLLEFSLTMDKKSSTAGQTDAEKNKWRELPVTERLSHALVKGIDAFVLGDVEEARVEADKPLDVIEGPLMD 713          
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A2V3IPK2 (Methionine synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPK2_9FLOR)

HSP 1 Score: 260 bits (664), Expect = 4.420e-74
Identity = 144/218 (66.06%), Postives = 154/218 (70.64%), Query Frame = 0
Query:  458 MGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLMD 628
            M FDE  QAA+RD++VRI +R YKILVEDVKFNPNDIIFDPNILTV T                                               AMHSAFL++GI+NGMDMGIVNAG+IPVY DIPE LLNLIED LLNR +EATENLLEFSLNMDKKSSLG G DADKNKWR L V +RLSHALVKGIDEFV GDVEEARQAADKPL VIEGPLMD
Sbjct:    1 MAFDEYEQAATRDEKVRIRSRPYKILVEDVKFNPNDIIFDPNILTVATGIEEHNNYAKDFFEATRIIKDTLPHCHISGGVSNISFSFRGNNALREAMHSAFLFHGISNGMDMGIVNAGIIPVYSDIPENLLNLIEDVLLNRKAEATENLLEFSLNMDKKSSLGAGNDADKNKWRELPVNQRLSHALVKGIDEFVNGDVEEARQAADKPLSVIEGPLMD 218          
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A1X6NND8 (Methionine synthase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NND8_PORUM)

HSP 1 Score: 247 bits (630), Expect = 7.570e-66
Identity = 139/237 (58.65%), Postives = 156/237 (65.82%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDTA-----------------------------------------------MHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLMD 628
            DEF RHA+L +RYGAAVVVM FDEEGQAA+ +D++RIC RAY+ILV++V F P+DIIFDPNILTV T                                                MHSAFLYYGI  GMD+GIVNAG+IPVY DIPE LL LIED LLNRS EATE LL  SL M K   +   TD +KNKWR L V+ERLSHALVKGIDEFV+GD EEARQ   KPL+VIEGPLMD
Sbjct:  475 DEFRRHARLVQRYGAAVVVMAFDEEGQAATTEDKIRICTRAYRILVDEVGFYPHDIIFDPNILTVATGIDEHNGYAVSFFDATEAIRKTLPGAHVSGGVSNISFSFRGNTYLRECMHSAFLYYGIKRGMDVGIVNAGLIPVYTDIPENLLKLIEDVLLNRSDEATEALLAHSLTMGK--GVKRQTDEEKNKWRELVVQERLSHALVKGIDEFVVGDTEEARQQYPKPLEVIEGPLMD 709          
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A1Y1IQU7 (Methionine synthase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQU7_KLENI)

HSP 1 Score: 208 bits (529), Expect = 1.120e-52
Identity = 118/239 (49.37%), Postives = 148/239 (61.92%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAAD--KPLDVIEGPLMD 628
            DEF RHAK+ +R+GAAVVVM FDE+GQAA+  D+VRICARA+KILVE+  FNP DIIFDPNILT+ T                                               A HSAFLY+ I  GMDMGIVNAG I +Y DI + LL  +ED +LNR  +ATE +LEF+  +D K+  G     +K++WR+L V++RLSHALVKGID++V+ D EEAR      +PL +IEGPLMD
Sbjct:  731 DEFKRHAKICRRHGAAVVVMAFDEDGQAATEYDKVRICARAFKILVEECAFNPEDIIFDPNILTIATGLEEHNNYAVDFFRATTKIKQICPGAKISGGVSNISFSFRGNEPVRRAFHSAFLYWAIQAGMDMGIVNAGQIDIYDDIDKDLLAHVEDCILNRRPDATERMLEFATKVDPKA--GAAVGGNKDEWRALPVEKRLSHALVKGIDQYVVADTEEARSGGRFARPLHIIEGPLMD 967          
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A5J4YWK2 (Methionine synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWK2_PORPP)

HSP 1 Score: 205 bits (522), Expect = 8.350e-52
Identity = 122/237 (51.48%), Postives = 144/237 (60.76%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLMD 628
            ++F+  A   KRYGAAVVVM FDEEGQAA+ +D+VRIC RAY+ILV+ V F   DIIFDPNILTV T                                               AMHSAFLY+GI N MDMGIVNAG+IPVY D+   L  LIED LL R++EATE LL  SL M K+      +D +KN+WR+  V+ERL HALVKGID++V+ D EEAR    KPL VIEGPLMD
Sbjct:  618 EKFIEVATTIKRYGAAVVVMAFDEEGQAATTEDKVRICTRAYRILVDRVGFPATDIIFDPNILTVATGIEEHNRYALNFIEACKIIRETLPHCHISGGVSNVSFSFRGNNVLREAMHSAFLYHGIKNKMDMGIVNAGLIPVYTDVDPYLRELIEDVLLYRNNEATEKLLAHSLTMGKEGDRKQ-SDEEKNRWRTGTVQERLHHALVKGIDQYVMDDAEEARLLYPKPLSVIEGPLMD 853          
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A7S4DBJ3 (Methionine synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ3_HETAK)

HSP 1 Score: 205 bits (521), Expect = 1.040e-51
Identity = 115/237 (48.52%), Postives = 143/237 (60.34%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLMD 628
            +EF RHA + K++G A+VVM FDE GQAA+ DD+V +C R+Y ILV++V F P DIIFDPNILTV T                                               AMHS FLY+ +  GMDMGIVNAG++ VY DIP  LL L+ED +LNR  +ATE LL+ SL   +K +  GG      +WR+  V ERL+HAL+KGIDEF+ GDVEE RQA  KPL+VIEGPLM+
Sbjct:  493 EEFKRHATICKKHGCAIVVMAFDENGQAATEDDKVAMCKRSYDILVDEVGFPPEDIIFDPNILTVATGLEEHNNYGVDFINATRRIKEQCPHAKISGGVSNLSFGFRGVNVIREAMHSVFLYHAVAAGMDMGIVNAGMMEVYDDIPADLLALVEDAVLNRRPDATERLLDRSLVEREKQAAAGGKVVKAVEWRTRPVAERLTHALIKGIDEFIDGDVEECRQAVAKPLEVIEGPLMN 729          
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A7S2XWE9 (Methionine synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 6.020e-51
Identity = 113/236 (47.88%), Postives = 144/236 (61.02%), Query Frame = 0
Query:  439 DEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLM 627
            +EF R A + KR+GAAV+VM FDEEGQAA+  ++VRIC R+Y ILV +V+F P DIIFDPNILT+ T                                               A+HS FLY+ +  GMDMGIVNAG++ VY DIP+ LL L+ED +LNR SEATE LLE SL   +K++ GGG    + +WR   V ERL++AL+KGI +++  DVEE RQ  D+PL VIEGPLM
Sbjct:  490 EEFKRQAGIIKRHGAAVIVMAFDEEGQAATESEKVRICKRSYDILVNEVQFPPEDIIFDPNILTIATGIEEHNNYGVDFIEATKKIKEICPYARISGGVSNLSFGFRGVNVIREAIHSVFLYHAVAAGMDMGIVNAGMMEVYDDIPKDLLQLVEDAVLNRHSEATEKLLERSLEEKEKAASGGGPKKKEVEWRIKPVTERLTYALIKGISQYIDEDVEECRQTVDRPLQVIEGPLM 725          
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A379X2J8 (B12-dependent methionine synthase n=2 Tax=Salmonella enterica I TaxID=59201 RepID=A0A379X2J8_SALET)

HSP 1 Score: 190 bits (482), Expect = 7.490e-51
Identity = 107/239 (44.77%), Postives = 139/239 (58.16%), Query Frame = 0
Query:  437 SVDEFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLMD 628
             V+ F+ HAKL +RYGAAVVVM FDE+GQA +R+ ++ IC RAYKIL E+V F P DIIFDPNI  V T                                               A+H+ FLYY I NGMDMGIVNAG + +Y D+P +L + +ED +LNR  + TE LL+ +    + S      +A + +WRS  VK+RL ++LVKGI EF+  D EEARQ A +P++VIEGPLMD
Sbjct:   78 GVEAFIHHAKLLRRYGAAVVVMAFDEQGQADTRERKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLDLAEKY-RGSKTDEAANAQQAEWRSWDVKKRLEYSLVKGITEFIEQDTEEARQQAARPIEVIEGPLMD 315          
BLAST of Ggra8694.t1 vs. uniprot
Match: A0A2T4VNP4 (Methionine synthase n=5 Tax=Archangiaceae TaxID=39 RepID=A0A2T4VNP4_VITXG)

HSP 1 Score: 200 bits (509), Expect = 1.240e-50
Identity = 116/239 (48.54%), Postives = 145/239 (60.67%), Query Frame = 0
Query:  440 EFMRHAKLAKRYGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNILTVDT-----------------------------------------------AMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLNRSSEATENLLEFSLNMDKKSSLGGGTDADKNK---WRSLQVKERLSHALVKGIDEFVLGDVEEARQAADKPLDVIEGPLMD 628
            EF+R A+L +RYGAA VVM FDE+GQAA+RDD+VRIC RAY++LV+ V F P DIIFDPNILTV T                                               A+H+AFLY+G+  GMDMGIVNAG++ VY +IP+ LL  +ED LLNR  +AT+ L+  +  M  K+  GGG+ A+  +   WR   V ERLSHALVKGID F+  D EEAR    +PLD+IEGPLMD
Sbjct:  117 EFLRRARLIRRYGAATVVMAFDEQGQAATRDDKVRICTRAYRLLVDQVGFPPEDIIFDPNILTVATGIEEHNSYAVDFFEATRLIKATLPHAKVSGGVSNVSFSFRGNNPVREAIHAAFLYHGVAAGMDMGIVNAGMLGVYEEIPKDLLVCVEDVLLNRRPDATDRLIALADEM--KARDGGGSKAEVKEDLAWRKAPVAERLSHALVKGIDAFIDADTEEARLLYKRPLDIIEGPLMD 353          
The following BLAST results are available for this feature:
BLAST of Ggra8694.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPK51.580e-8668.60Methionine synthase n=1 Tax=Gracilariopsis chorda ... [more]
R7QHF91.720e-7864.56Methionine synthase n=1 Tax=Chondrus crispus TaxID... [more]
A0A2V3IPK24.420e-7466.06Methionine synthase n=1 Tax=Gracilariopsis chorda ... [more]
A0A1X6NND87.570e-6658.65Methionine synthase n=1 Tax=Porphyra umbilicalis T... [more]
A0A1Y1IQU71.120e-5249.37Methionine synthase n=1 Tax=Klebsormidium nitens T... [more]
A0A5J4YWK28.350e-5251.48Methionine synthase n=1 Tax=Porphyridium purpureum... [more]
A0A7S4DBJ31.040e-5148.52Methionine synthase n=1 Tax=Heterosigma akashiwo T... [more]
A0A7S2XWE96.020e-5147.88Methionine synthase n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A379X2J87.490e-5144.77B12-dependent methionine synthase n=2 Tax=Salmonel... [more]
A0A2T4VNP41.240e-5048.54Methionine synthase n=5 Tax=Archangiaceae TaxID=39... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 338..386
NoneNo IPR availableCOILSCoilCoilcoord: 281..308
NoneNo IPR availableCOILSCoilCoilcoord: 310..330
NoneNo IPR availablePANTHERPTHR11103SLR1189 PROTEINcoord: 438..508
coord: 505..629
IPR003759Cobalamin (vitamin B12)-binding module, cap domainSMARTSM01018B12_binding_2_2coord: 586..644
e-value: 0.0089
score: 12.1
IPR003759Cobalamin (vitamin B12)-binding module, cap domainPROSITEPS51337B12_BINDING_NTERcoord: 579..628
score: 14.623774
IPR000489Pterin-binding domainPFAMPF00809Pterin_bindcoord: 440..514
e-value: 2.2E-9
score: 37.4
IPR011005Dihydropteroate synthase-likeGENE3D3.20.20.20coord: 436..505
e-value: 7.6E-22
score: 79.3
coord: 506..571
e-value: 1.4E-14
score: 55.5
IPR011005Dihydropteroate synthase-likeSUPERFAMILY51717Dihydropteroate synthetase-likecoord: 439..558
IPR036594Methionine synthase domainGENE3D1.10.1240.10Methionine synthase domaincoord: 575..633
e-value: 2.0E-11
score: 45.5
IPR036594Methionine synthase domainSUPERFAMILY47644Methionine synthase domaincoord: 582..628

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000422_piloncontigtig00000422_pilon:9232..17684 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8694.t1Ggra8694.t1Gracilaria gracilis GNS1m malemRNAtig00000422_pilon 9232..17684 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8694.t1 ID=Ggra8694.t1|Name=Ggra8694.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=711bp
MGEFNFSPLFEPNPFTDPLIDILKEGNKPYSTELYQKLCNAIARFMWVNA
LPFDVDQPIFQSIFRRTVKSYPWFGDHELTTLKIFSIIQDYHQRLHGNFV
KHIRRVTEPRLDHFIRIYIHCLYLIGGKVVLSFVADVDRDGKYVVYMGSL
TVFYEEVTYNIFEEQMLCLLEEYVKVENISCLAGNAFACNELVKLFCIRH
KIVRYCYVELSKAVNYIILENISSTTLSIYRGRVQTQLRKVYLFGVWNLA
IRESAIEREKKEAEAALATILGSFEKAVAALQGTKDENSRLLVEFEATEE
EVDRLKKQLINNLRPSLEKLSKEVQTLEAKAFDISSTFEDAKEELQKEKD
RMASSNKSIWTARQNTEELSEKIEALNLEAARLSKKINKKAMHMFETAKE
ENRGLLKKKAIIEEDTPGIVFATLWEDAAVPPLLILSVDEFMRHAKLAKR
YGAAVVVMGFDEEGQAASRDDRVRICARAYKILVEDVKFNPNDIIFDPNI
LTVDTAMHSAFLYYGITNGMDMGIVNAGVIPVYLDIPEKLLNLIEDFLLN
RSSEATENLLEFSLNMDKKSSLGGGTDADKNKWRSLQVKERLSHALVKGI
DEFVLGDVEEARQAADKPLDVIEGPLMDVSSAIMLSDSFSGSTSFSSWHA
AKSSCITAKSSKSISSSPSSRAPDLVYSSSKNLEYGCPLDSPVTELEGIA
SAVAPNLRVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003759Cbl-bd_cap
IPR000489Pterin-binding_dom
IPR011005Dihydropteroate_synth-like
IPR036594Meth_synthase_dom