Ggra10298.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10298.t1
Unique NameGgra10298.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:537095..538175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5346.XP_001839332.2
Max annot lvl4751|Fungi
Evalue5.37e-09
EggNOG OGs2ENSW@1|root,2SS4X@2759|Eukaryota,3APD1@33154|Opisthokonta,3PF5V@4751|Fungi,3V5R7@5204|Basidiomycota,22C3I@155619|Agaricomycetes
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10298Ggra10298Gracilaria gracilis GNS1m malegenetig00000016_pilon 537095..538175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10298.t1Ggra10298.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 537095..538175 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10298.t1.stop1Ggra10298.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 537095..537097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10298.t1.CDS1Ggra10298.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 537095..538062 -
Ggra10298.t1.CDS2Ggra10298.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 538151..538175 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10298.t1.exon1Ggra10298.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 537095..538062 -
Ggra10298.t1.exon2Ggra10298.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 538151..538175 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10298.t1.intron1Ggra10298.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 538063..538150 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10298.t1.start1Ggra10298.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 538173..538175 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10298.t1 ID=Ggra10298.t1|Name=Ggra10298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MSVDLFYPENRDRAKRVQELVDDISGMQNAIRTKTIQLDEADARIVPLLN
DLMKKNGLRTIQELIERTVGELPPELEHSIREFLGELNKTNANLEKAFGA
VTSITLAAAAGGVSAKVIQLVKSNAVFVSTRLTMKAFTVALRGGANALEE
AGELLKAASKASSALSTSFETTTSLGKALKFVKTTGKVLTVLGIVVDVAL
TITAAVEGAKQRDKLQDQINENFERRVSVALLTALASAAVAMNGNLESIL
LLESMKGKDPSVDDDLQQAIDLLTEPIASSIEEVWDSITYESVSEVWTNL
DRSRGSWTEEDPSLKKVLGELEAEEDIAFT*
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spliced messenger RNA

>Ggra10298.t1 ID=Ggra10298.t1|Name=Ggra10298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000016_pilon:537095..538175- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTCGATCTTTTCTATCCAGAGAATCGCGACCGCGCAAAGCGAGT
TCAGGAACTGGTAGACGACATTTCGGGTATGCAAAATGCGATAAGAACCA
AAACGATTCAACTCGATGAGGCCGATGCTCGAATTGTACCACTCTTGAAC
GATCTGATGAAGAAAAATGGATTGCGCACGATCCAAGAGTTGATTGAAAG
GACAGTTGGAGAGCTGCCTCCCGAGTTGGAGCATTCTATACGCGAGTTTT
TGGGCGAGTTGAACAAAACGAACGCAAACTTGGAAAAGGCATTTGGTGCT
GTTACTTCTATAACTCTGGCAGCGGCGGCAGGTGGAGTTAGCGCTAAAGT
CATCCAGCTGGTAAAGAGTAATGCCGTGTTCGTCAGTACGCGTTTGACAA
TGAAGGCATTCACAGTTGCGCTTCGCGGCGGAGCCAACGCTCTTGAAGAA
GCTGGGGAACTTCTCAAGGCTGCGAGCAAAGCATCTTCAGCGCTATCGAC
ATCGTTTGAGACGACTACAAGCCTGGGTAAAGCTCTCAAATTCGTCAAGA
CGACCGGGAAAGTGCTGACGGTATTAGGAATCGTGGTAGATGTGGCCTTA
ACGATAACTGCGGCTGTGGAAGGAGCCAAACAGCGGGATAAACTGCAGGA
CCAAATTAACGAGAACTTTGAGAGGCGAGTGAGTGTTGCTCTATTGACTG
CGCTTGCTTCGGCAGCAGTAGCCATGAATGGAAACCTGGAGTCGATACTC
TTGCTTGAGTCAATGAAGGGCAAAGACCCTAGCGTAGACGATGATCTTCA
GCAAGCTATTGACCTACTGACAGAGCCAATTGCGAGTTCAATTGAAGAAG
TATGGGATAGTATTACTTATGAGAGTGTATCGGAAGTGTGGACCAACTTG
GATCGAAGCCGAGGCAGCTGGACGGAGGAGGATCCATCGCTGAAGAAGGT
TTTAGGTGAGCTGGAGGCTGAGGAGGACATAGCTTTCACTTGA
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protein sequence of Ggra10298.t1

>Ggra10298.t1 ID=Ggra10298.t1|Name=Ggra10298.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MSVDLFYPENRDRAKRVQELVDDISGMQNAIRTKTIQLDEADARIVPLLN
DLMKKNGLRTIQELIERTVGELPPELEHSIREFLGELNKTNANLEKAFGA
VTSITLAAAAGGVSAKVIQLVKSNAVFVSTRLTMKAFTVALRGGANALEE
AGELLKAASKASSALSTSFETTTSLGKALKFVKTTGKVLTVLGIVVDVAL
TITAAVEGAKQRDKLQDQINENFERRVSVALLTALASAAVAMNGNLESIL
LLESMKGKDPSVDDDLQQAIDLLTEPIASSIEEVWDSITYESVSEVWTNL
DRSRGSWTEEDPSLKKVLGELEAEEDIAFT*
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mRNA from alignment at tig00000016_pilon:537095..538175-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10298.t1 ID=Ggra10298.t1|Name=Ggra10298.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1081bp|location=Sequence derived from alignment at tig00000016_pilon:537095..538175- (Gracilaria gracilis GNS1m male)
ATGTCGGTCGATCTTTTCTATCCAGGTGAGTTGCAATTATAAGCAATGGA
AAGCTTCTGGTGAGAATGATGAGGTACAGAATCTGACAAAACTCATCATC
AATTTCTTTTTAGAGAATCGCGACCGCGCAAAGCGAGTTCAGGAACTGGT
AGACGACATTTCGGGTATGCAAAATGCGATAAGAACCAAAACGATTCAAC
TCGATGAGGCCGATGCTCGAATTGTACCACTCTTGAACGATCTGATGAAG
AAAAATGGATTGCGCACGATCCAAGAGTTGATTGAAAGGACAGTTGGAGA
GCTGCCTCCCGAGTTGGAGCATTCTATACGCGAGTTTTTGGGCGAGTTGA
ACAAAACGAACGCAAACTTGGAAAAGGCATTTGGTGCTGTTACTTCTATA
ACTCTGGCAGCGGCGGCAGGTGGAGTTAGCGCTAAAGTCATCCAGCTGGT
AAAGAGTAATGCCGTGTTCGTCAGTACGCGTTTGACAATGAAGGCATTCA
CAGTTGCGCTTCGCGGCGGAGCCAACGCTCTTGAAGAAGCTGGGGAACTT
CTCAAGGCTGCGAGCAAAGCATCTTCAGCGCTATCGACATCGTTTGAGAC
GACTACAAGCCTGGGTAAAGCTCTCAAATTCGTCAAGACGACCGGGAAAG
TGCTGACGGTATTAGGAATCGTGGTAGATGTGGCCTTAACGATAACTGCG
GCTGTGGAAGGAGCCAAACAGCGGGATAAACTGCAGGACCAAATTAACGA
GAACTTTGAGAGGCGAGTGAGTGTTGCTCTATTGACTGCGCTTGCTTCGG
CAGCAGTAGCCATGAATGGAAACCTGGAGTCGATACTCTTGCTTGAGTCA
ATGAAGGGCAAAGACCCTAGCGTAGACGATGATCTTCAGCAAGCTATTGA
CCTACTGACAGAGCCAATTGCGAGTTCAATTGAAGAAGTATGGGATAGTA
TTACTTATGAGAGTGTATCGGAAGTGTGGACCAACTTGGATCGAAGCCGA
GGCAGCTGGACGGAGGAGGATCCATCGCTGAAGAAGGTTTTAGGTGAGCT
GGAGGCTGAGGAGGACATAGCTTTCACTTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:537095..538175-

>Ggra10298.t1 ID=Ggra10298.t1|Name=Ggra10298.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000016_pilon:537095..538175- (Gracilaria gracilis GNS1m male)
ATGTCGGTCGATCTTTTCTATCCAGAGAATCGCGACCGCGCAAAGCGAGT
TCAGGAACTGGTAGACGACATTTCGGGTATGCAAAATGCGATAAGAACCA
AAACGATTCAACTCGATGAGGCCGATGCTCGAATTGTACCACTCTTGAAC
GATCTGATGAAGAAAAATGGATTGCGCACGATCCAAGAGTTGATTGAAAG
GACAGTTGGAGAGCTGCCTCCCGAGTTGGAGCATTCTATACGCGAGTTTT
TGGGCGAGTTGAACAAAACGAACGCAAACTTGGAAAAGGCATTTGGTGCT
GTTACTTCTATAACTCTGGCAGCGGCGGCAGGTGGAGTTAGCGCTAAAGT
CATCCAGCTGGTAAAGAGTAATGCCGTGTTCGTCAGTACGCGTTTGACAA
TGAAGGCATTCACAGTTGCGCTTCGCGGCGGAGCCAACGCTCTTGAAGAA
GCTGGGGAACTTCTCAAGGCTGCGAGCAAAGCATCTTCAGCGCTATCGAC
ATCGTTTGAGACGACTACAAGCCTGGGTAAAGCTCTCAAATTCGTCAAGA
CGACCGGGAAAGTGCTGACGGTATTAGGAATCGTGGTAGATGTGGCCTTA
ACGATAACTGCGGCTGTGGAAGGAGCCAAACAGCGGGATAAACTGCAGGA
CCAAATTAACGAGAACTTTGAGAGGCGAGTGAGTGTTGCTCTATTGACTG
CGCTTGCTTCGGCAGCAGTAGCCATGAATGGAAACCTGGAGTCGATACTC
TTGCTTGAGTCAATGAAGGGCAAAGACCCTAGCGTAGACGATGATCTTCA
GCAAGCTATTGACCTACTGACAGAGCCAATTGCGAGTTCAATTGAAGAAG
TATGGGATAGTATTACTTATGAGAGTGTATCGGAAGTGTGGACCAACTTG
GATCGAAGCCGAGGCAGCTGGACGGAGGAGGATCCATCGCTGAAGAAGGT
TTTAGGTGAGCTGGAGGCTGAGGAGGACATAGCTTTCACTTGA
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