Ggra457.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra457.t1
Unique NameGgra457.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000242_piloncontigtig00000242_pilon:49566..50207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra457Ggra457Gracilaria gracilis GNS1m malegenetig00000242_pilon 49566..50207 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra457.t1.stop1Ggra457.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000242_pilon 49566..49568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra457.t1.CDS1Ggra457.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000242_pilon 49566..50207 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra457.t1.exon1Ggra457.t1.exon1Gracilaria gracilis GNS1m maleexontig00000242_pilon 49566..50207 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra457.t1.start1Ggra457.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000242_pilon 50205..50207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra457.t1Ggra457.t1Gracilaria gracilis GNS1m malepolypeptidetig00000242_pilon 49566..50207 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra457.t1 ID=Ggra457.t1|Name=Ggra457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MRRTRFLHVLFTALSLTLLLRAPRRGSASPVALQPAARQLSTGPVAMLFA
TAPPQIAFSPDAMLDLLSPQPSADAFPELSADATAEEEPTAEPTEPPPPE
PSPELLPEPSAQVEAPPPIAASPPQSPTPAPARAPSAATSTPQPDGDDDG
GGIDTTGVVLAAVMIVAAVLLSALGIIFCSPEAAPPPPQAPLPPIMPAAA
ETIITPPPPPPAP*
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spliced messenger RNA

>Ggra457.t1 ID=Ggra457.t1|Name=Ggra457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000242_pilon:49566..50207- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGTACGCGCTTCCTGCACGTCCTGTTCACCGCGCTATCGCTCAC
GCTTCTGCTGCGCGCGCCGCGCCGCGGCAGCGCTTCTCCAGTCGCGCTTC
AACCAGCGGCGCGCCAGCTTTCAACCGGCCCAGTCGCCATGCTGTTCGCC
ACGGCCCCGCCACAGATCGCCTTCTCGCCCGACGCCATGCTCGACCTGCT
CTCGCCACAGCCCTCAGCAGACGCCTTTCCAGAACTCTCCGCAGACGCCA
CCGCCGAAGAGGAGCCAACCGCCGAGCCAACAGAGCCGCCCCCGCCCGAG
CCATCGCCAGAGCTGCTCCCAGAGCCCAGCGCGCAAGTAGAAGCGCCGCC
GCCCATCGCCGCCTCGCCGCCGCAGTCGCCCACGCCAGCGCCCGCGCGCG
CGCCGTCCGCCGCCACGTCAACGCCGCAGCCGGACGGCGACGACGACGGC
GGCGGCATCGACACCACCGGCGTCGTGCTGGCCGCCGTCATGATCGTGGC
CGCCGTGCTCTTATCAGCGCTCGGCATCATCTTCTGCTCCCCGGAAGCAG
CGCCGCCGCCGCCTCAGGCACCGCTACCGCCCATCATGCCGGCCGCCGCG
GAGACCATCATCACGCCGCCGCCGCCACCGCCGGCGCCGTAA
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protein sequence of Ggra457.t1

>Ggra457.t1 ID=Ggra457.t1|Name=Ggra457.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MRRTRFLHVLFTALSLTLLLRAPRRGSASPVALQPAARQLSTGPVAMLFA
TAPPQIAFSPDAMLDLLSPQPSADAFPELSADATAEEEPTAEPTEPPPPE
PSPELLPEPSAQVEAPPPIAASPPQSPTPAPARAPSAATSTPQPDGDDDG
GGIDTTGVVLAAVMIVAAVLLSALGIIFCSPEAAPPPPQAPLPPIMPAAA
ETIITPPPPPPAP*
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mRNA from alignment at tig00000242_pilon:49566..50207-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra457.t1 ID=Ggra457.t1|Name=Ggra457.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000242_pilon:49566..50207- (Gracilaria gracilis GNS1m male)
ATGCGCCGTACGCGCTTCCTGCACGTCCTGTTCACCGCGCTATCGCTCAC
GCTTCTGCTGCGCGCGCCGCGCCGCGGCAGCGCTTCTCCAGTCGCGCTTC
AACCAGCGGCGCGCCAGCTTTCAACCGGCCCAGTCGCCATGCTGTTCGCC
ACGGCCCCGCCACAGATCGCCTTCTCGCCCGACGCCATGCTCGACCTGCT
CTCGCCACAGCCCTCAGCAGACGCCTTTCCAGAACTCTCCGCAGACGCCA
CCGCCGAAGAGGAGCCAACCGCCGAGCCAACAGAGCCGCCCCCGCCCGAG
CCATCGCCAGAGCTGCTCCCAGAGCCCAGCGCGCAAGTAGAAGCGCCGCC
GCCCATCGCCGCCTCGCCGCCGCAGTCGCCCACGCCAGCGCCCGCGCGCG
CGCCGTCCGCCGCCACGTCAACGCCGCAGCCGGACGGCGACGACGACGGC
GGCGGCATCGACACCACCGGCGTCGTGCTGGCCGCCGTCATGATCGTGGC
CGCCGTGCTCTTATCAGCGCTCGGCATCATCTTCTGCTCCCCGGAAGCAG
CGCCGCCGCCGCCTCAGGCACCGCTACCGCCCATCATGCCGGCCGCCGCG
GAGACCATCATCACGCCGCCGCCGCCACCGCCGGCGCCGTAA
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Coding sequence (CDS) from alignment at tig00000242_pilon:49566..50207-

>Ggra457.t1 ID=Ggra457.t1|Name=Ggra457.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000242_pilon:49566..50207- (Gracilaria gracilis GNS1m male)
ATGCGCCGTACGCGCTTCCTGCACGTCCTGTTCACCGCGCTATCGCTCAC
GCTTCTGCTGCGCGCGCCGCGCCGCGGCAGCGCTTCTCCAGTCGCGCTTC
AACCAGCGGCGCGCCAGCTTTCAACCGGCCCAGTCGCCATGCTGTTCGCC
ACGGCCCCGCCACAGATCGCCTTCTCGCCCGACGCCATGCTCGACCTGCT
CTCGCCACAGCCCTCAGCAGACGCCTTTCCAGAACTCTCCGCAGACGCCA
CCGCCGAAGAGGAGCCAACCGCCGAGCCAACAGAGCCGCCCCCGCCCGAG
CCATCGCCAGAGCTGCTCCCAGAGCCCAGCGCGCAAGTAGAAGCGCCGCC
GCCCATCGCCGCCTCGCCGCCGCAGTCGCCCACGCCAGCGCCCGCGCGCG
CGCCGTCCGCCGCCACGTCAACGCCGCAGCCGGACGGCGACGACGACGGC
GGCGGCATCGACACCACCGGCGTCGTGCTGGCCGCCGTCATGATCGTGGC
CGCCGTGCTCTTATCAGCGCTCGGCATCATCTTCTGCTCCCCGGAAGCAG
CGCCGCCGCCGCCTCAGGCACCGCTACCGCCCATCATGCCGGCCGCCGCG
GAGACCATCATCACGCCGCCGCCGCCACCGCCGGCGCCGTAA
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