Ggra1189.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1189.t1
Unique NameGgra1189.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:120987..121409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1189Ggra1189Gracilaria gracilis GNS1m malegenetig00000237_pilon 120987..121409 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1189.t1.stop1Ggra1189.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 120987..120989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1189.t1.CDS1Ggra1189.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 120987..121409 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1189.t1.exon1Ggra1189.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 120987..121409 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1189.t1.start1Ggra1189.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 121407..121409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1189.t1Ggra1189.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 120987..121409 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1189.t1 ID=Ggra1189.t1|Name=Ggra1189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=141bp
MSSNSMWPSRVLLFSLILFFTQCVARLVSNNPSFEENVSGGNQGPGGRFW
STRLPTNANGAYEFIRDASKARTGSGLLTLKLEARAVFPTFIRIGKPVRL
RNRFRYKVSIWVRADSGTFIDGNNGAVVSTFCEARNTGVL*
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spliced messenger RNA

>Ggra1189.t1 ID=Ggra1189.t1|Name=Ggra1189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000237_pilon:120987..121409- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCAAACAGCATGTGGCCATCACGAGTGTTGCTCTTCTCTCTAAT
CCTCTTTTTCACGCAATGTGTCGCGAGATTAGTGTCGAACAATCCTTCAT
TTGAGGAAAACGTCTCCGGAGGAAATCAAGGACCTGGTGGCAGGTTTTGG
AGTACTCGTTTACCCACCAATGCCAACGGAGCATACGAGTTCATTCGTGA
TGCTTCCAAAGCCCGAACTGGTTCAGGATTGCTCACTCTCAAGCTGGAAG
CAAGGGCTGTATTCCCTACATTCATTCGCATAGGAAAACCCGTGCGTCTT
CGAAATCGTTTTCGATATAAGGTTTCAATTTGGGTTCGCGCGGACTCCGG
AACCTTCATTGATGGCAACAATGGTGCTGTTGTCTCCACGTTTTGTGAAG
CAAGGAACACGGGAGTGTTGTAG
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protein sequence of Ggra1189.t1

>Ggra1189.t1 ID=Ggra1189.t1|Name=Ggra1189.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MSSNSMWPSRVLLFSLILFFTQCVARLVSNNPSFEENVSGGNQGPGGRFW
STRLPTNANGAYEFIRDASKARTGSGLLTLKLEARAVFPTFIRIGKPVRL
RNRFRYKVSIWVRADSGTFIDGNNGAVVSTFCEARNTGVL*
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mRNA from alignment at tig00000237_pilon:120987..121409-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1189.t1 ID=Ggra1189.t1|Name=Ggra1189.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000237_pilon:120987..121409- (Gracilaria gracilis GNS1m male)
ATGTCTTCAAACAGCATGTGGCCATCACGAGTGTTGCTCTTCTCTCTAAT
CCTCTTTTTCACGCAATGTGTCGCGAGATTAGTGTCGAACAATCCTTCAT
TTGAGGAAAACGTCTCCGGAGGAAATCAAGGACCTGGTGGCAGGTTTTGG
AGTACTCGTTTACCCACCAATGCCAACGGAGCATACGAGTTCATTCGTGA
TGCTTCCAAAGCCCGAACTGGTTCAGGATTGCTCACTCTCAAGCTGGAAG
CAAGGGCTGTATTCCCTACATTCATTCGCATAGGAAAACCCGTGCGTCTT
CGAAATCGTTTTCGATATAAGGTTTCAATTTGGGTTCGCGCGGACTCCGG
AACCTTCATTGATGGCAACAATGGTGCTGTTGTCTCCACGTTTTGTGAAG
CAAGGAACACGGGAGTGTTGTAG
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Coding sequence (CDS) from alignment at tig00000237_pilon:120987..121409-

>Ggra1189.t1 ID=Ggra1189.t1|Name=Ggra1189.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000237_pilon:120987..121409- (Gracilaria gracilis GNS1m male)
ATGTCTTCAAACAGCATGTGGCCATCACGAGTGTTGCTCTTCTCTCTAAT
CCTCTTTTTCACGCAATGTGTCGCGAGATTAGTGTCGAACAATCCTTCAT
TTGAGGAAAACGTCTCCGGAGGAAATCAAGGACCTGGTGGCAGGTTTTGG
AGTACTCGTTTACCCACCAATGCCAACGGAGCATACGAGTTCATTCGTGA
TGCTTCCAAAGCCCGAACTGGTTCAGGATTGCTCACTCTCAAGCTGGAAG
CAAGGGCTGTATTCCCTACATTCATTCGCATAGGAAAACCCGTGCGTCTT
CGAAATCGTTTTCGATATAAGGTTTCAATTTGGGTTCGCGCGGACTCCGG
AACCTTCATTGATGGCAACAATGGTGCTGTTGTCTCCACGTTTTGTGAAG
CAAGGAACACGGGAGTGTTGTAG
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